mRNA_H-paniculata_contig15800.3372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15800.3372.1
Unique NamemRNA_H-paniculata_contig15800.3372.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15800.3372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15800contigH-paniculata_contig15800:1896..3561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size203
Cds size201
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15800.3372.1prot_H-paniculata_contig15800.3372.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15800 1897..3561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.775307-CDS-H-paniculata_contig15800:1896..19541622929261.775307-CDS-H-paniculata_contig15800:1896..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15800 1897..1954 -
1691480791.9859538-CDS-H-paniculata_contig15800:1896..19541691480791.9859538-CDS-H-paniculata_contig15800:1896..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15800 1897..1954 -
1622929261.8182673-CDS-H-paniculata_contig15800:3081..31911622929261.8182673-CDS-H-paniculata_contig15800:3081..3191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15800 3082..3191 -
1691480791.9963057-CDS-H-paniculata_contig15800:3081..31911691480791.9963057-CDS-H-paniculata_contig15800:3081..3191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15800 3082..3191 -
1622929261.835285-CDS-H-paniculata_contig15800:3528..35611622929261.835285-CDS-H-paniculata_contig15800:3528..3561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15800 3529..3561 -
1691480792.0052402-CDS-H-paniculata_contig15800:3528..35611691480792.0052402-CDS-H-paniculata_contig15800:3528..3561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15800 3529..3561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15800.3372.1

>prot_H-paniculata_contig15800.3372.1 ID=prot_H-paniculata_contig15800.3372.1|Name=mRNA_H-paniculata_contig15800.3372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
DNLQSRKNSFELLEDFCTGNVHPYLSLDGDTDSSQPHRRSGVEAPSTSRA
SERPENFDAFTRPGSNK
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mRNA from alignment at H-paniculata_contig15800:1896..3561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15800.3372.1 ID=mRNA_H-paniculata_contig15800.3372.1|Name=mRNA_H-paniculata_contig15800.3372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1666bp|location=Sequence derived from alignment at H-paniculata_contig15800:1896..3561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAATCTACAGTCCAGGAAAAATTCGTTCGAGGTGTGTACGACGCAGTG
CTCCACCATCAAGTAGGTGAAATAGTCGTTCAACCGGATCATATCTCGAG
CAGAGAAGACATAAAAAGTACAGCACATATTCTGATAAATGCAGCATTGC
AAGGTAAATTCGAACTATTATATTGAGCCGGTCATCCAACTCCACTTCAC
AAATCTGGTGTATTCTGCGCTTTCAGAAAAGCAGTCCCAAACTGAAAAGG
GGTGTTAGGGTATGTCACGTGATGACCCTCCCTTCCTCCCTCTCTCCCAC
TCTCCTTCCCTCCGTCCTTCCCTCCCTCCCGCCTTTTTCTACCCCCGGCG
TTTTTCATTTCTTCCTGCAGTTGCTGGAGGACTTCTGCACGGGTAACGTT
CATCCCTACTTGTCACTCGACGGCGACACGGACAGTTCACAGCCCCACCG
TAGAAGCGGAGTAGAAGCTCCATCCACTAGGTGAGACGACGTACTGCAGT
ACGCGACACTAGAAGAAGCATTTTATCGGACACGAGGCTCAACGTAACCT
TCATTTAAACGCCAAACGTTAAACACTCCTCCCTTCGTTGTTATTTATGC
TTGGTTCAGCATATAGCCCCCTCAGCCGACCGGAGAGACCAAGTTCAGCT
CGGTTTTTCTTATCCTCAAGAGGTGTTATTTTCTTCAGATATATCGCATA
ATGTACCCATTACGGCCTTTCCTGAAGATACCCTTAATTGTATTTGATTC
GGAAGATATACTCAATTTATCCTTCAATGATATCAGGTCATGGACCAGAC
CAGACACGCCTCCCGAATACCATCGCCCCCTCCCTCCTCGATTGTTGAAC
AACAGATGTGCTGTTCGTACGAACCATCCAACTCAGAACGAGCTTGGCTT
TTTGTTTTCTTTCCATTTTGACCTGCAACACTAACAGTTCAGTTGAAGCA
CATAGAACATCAATCCAAACGTGTTTTTGGTGGAATCCTTTGGGGTTTTA
CCGAAAACCCCATCCATTTTTCACGGAAACTACCATTTCCGTTCCGTGAG
AACACGCAAGCCTTATACGTTGGACTACAGGACCCTCATGGGATGAGAAA
ACATTGGGGTTTTGGAGGACGGGATCGGATCCCGTCTGCTCTCATCTGGT
CCCGTTTCGTCCTTATTCTCAAGCAACGGTCTGGTCCCGTGCAGCCGTGT
TCTGTGAGAAATGGAACCCATACGGCAATCAAGTATAAATGTCAGGAGGT
CTCGTGCCGTCAAAACGCAAATGCTGTAGTCCCCACTTGCCATGTTCCAG
ATCGCATTCCTATGGTGTATGTAATACTGTAGTTGCTGCCCGACTGGCGA
AGGTTTCCTTAATTGAAGGGCGATGCACACGTTGTTAGCGTCGCTTTTGT
TTTCCGTGTGGCGAAGCTGATGGCAGAGATCTTGCTCCTGCATGAAATGA
AGTGGACGTAATCTTATCTGTTCGCCACCGACCCGTTGTCCCCTGCCGTG
GCGCTGTGCTACGCCTCTCCCCCCCCCCACGTGCCCGTTACAACCCGATT
TCTCGCCGTCAATAATTGTGTACCGATACATGCAACGCTTGGGGACTTGG
TATTTAGCCGTGCCTCCGAGAGACCCGAGAACTTTGACGCGTTCACACGG
CCCGGCAGCAACAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15800:1896..3561-

>mRNA_H-paniculata_contig15800.3372.1 ID=mRNA_H-paniculata_contig15800.3372.1|Name=mRNA_H-paniculata_contig15800.3372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig15800:1896..3561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAATCTACAGTCCAGGAAAAATTCGTTCGAGGATAATCTACAGTCCAG
GAAAAATTCGTTCGAGTTGCTGGAGGACTTCTGCACGGGTAACGTTCATC
CCTACTTGTCACTCGACGGCGACACGGACAGTTCACAGCCCCACCGTAGA
AGCGGAGTAGAAGCTCCATCCACTAGTTGCTGGAGGACTTCTGCACGGGT
AACGTTCATCCCTACTTGTCACTCGACGGCGACACGGACAGTTCACAGCC
CCACCGTAGAAGCGGAGTAGAAGCTCCATCCACTAGCCGTGCCTCCGAGA
GACCCGAGAACTTTGACGCGTTCACACGGCCCGGCAGCAACAAGCCGTGC
CTCCGAGAGACCCGAGAACTTTGACGCGTTCACACGGCCCGGCAGCAACA
AG
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