mRNA_H-paniculata_contig1580.3371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1580.3371.1
Unique NamemRNA_H-paniculata_contig1580.3371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1580.3371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1580contigH-paniculata_contig1580:17933..25235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size147
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1580.3371.1prot_H-paniculata_contig1580.3371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1580 17977..25235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.4764392-UTR-H-paniculata_contig1580:17932..179761622929261.4764392-UTR-H-paniculata_contig1580:17932..17976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1580 17933..17976 +
1691480791.8558185-UTR-H-paniculata_contig1580:17932..179761691480791.8558185-UTR-H-paniculata_contig1580:17932..17976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1580 17933..17976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.491635-CDS-H-paniculata_contig1580:17976..180961622929261.491635-CDS-H-paniculata_contig1580:17976..18096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1580 17977..18096 +
1691480791.8729525-CDS-H-paniculata_contig1580:17976..180961691480791.8729525-CDS-H-paniculata_contig1580:17976..18096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1580 17977..18096 +
1622929261.5114052-CDS-H-paniculata_contig1580:25208..252351622929261.5114052-CDS-H-paniculata_contig1580:25208..25235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1580 25209..25235 +
1691480791.8833668-CDS-H-paniculata_contig1580:25208..252351691480791.8833668-CDS-H-paniculata_contig1580:25208..25235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1580 25209..25235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1580.3371.1

>prot_H-paniculata_contig1580.3371.1 ID=prot_H-paniculata_contig1580.3371.1|Name=mRNA_H-paniculata_contig1580.3371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MAFDIPERQFIAGRDMIPLQGQLAAVLRARHPFLLFSSCQGVKNLMDRL
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mRNA from alignment at H-paniculata_contig1580:17933..25235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1580.3371.1 ID=mRNA_H-paniculata_contig1580.3371.1|Name=mRNA_H-paniculata_contig1580.3371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7303bp|location=Sequence derived from alignment at H-paniculata_contig1580:17933..25235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACTCTTTCTTTGGAAGCTCGAGATTGCTGATGCAATCCTTCTATGGCA
TTTGACATACCCGAACGACAGTTCATCGCAGGGAGAGACATGATCCCTCT
ACAAGGTCAACTTGCTGCTGTGCTACGAGCACGGCACCCATTTTTACTTT
TCTCATCATGTCAGGTATAGTCCATCGGAAAAGCGGCGAAAATTACGTTA
GCTGGCGGCGCCTTCGTGTTCAGCACGCCAAAAACACGAGTGATCGCTCC
GATCACATCAGAATTAGAGACAACGTCTGAGCAAAAAAACAGCAGGCACG
AGGCGCCAGTAAGCATTTCCTGCTTACCGGATAATACTTGGCAAGTGCTC
GTTTTGACTTCTTTTGTTTTAGGACAGCACAGTACATTCCACTCACTACA
GTAGGTCAGGGGTTATGATCTGGTACACTATTTTAAAGTTGTTCAACGTC
TGCAATTTATGGATTGACTCTGTGATTTATACTGTCAGACAGAGACCACC
GTCGTCGACAGCTACAGTACCAATTGACTCATCTGCAAGTGACTTGAGGG
CTGCAGGGTAATGAAGCGAAATAAGGGAGAGTTTGTTCATTTTGCTTAAT
AGCACTAAATACGCAACGACGTCTCCCACCAGTCAATACTGTCACTCCTT
GATTACGCAGAACATATGAAGCTTCACCTGTTGCTCCCCCTCCGTGCCCC
AGTTGCTGCCATGTGTACGTGCCGCGTTTAAGTTACACACACACACACAC
ACACACATCACAACACAACACAACACAACACGAACAACAGAGAGGAAACA
TTAAAAAATATAATGCAATCCAAACGAGCTCTCACTATTTATATCCCCCG
CATGTTGCCCGCACGCACGAAGGACCTCCACGTAATCACAACCATTCTCT
CACCACTGACCGGTGAACCCAGGCACCACCCTCGGCAGCACAAAACTCCG
GCTTCGAGTCGCGCACGACGTGATCATGACCAGCACAAGGCCTCGACCCC
TGCTCGTCATCAGCCGCCCTCTGAACGTAACCATCAAGTTCCTTGAGGAC
GATCTCCCTTAGCTTTCGACAAATACGAAACCTCCTTCACTTCTCTCGCA
AATTATAGAAACAAATGAAGCAAGGGTTTGTTGTTGTGGTGAGAGAAGCT
GCCTGCCTATTGGGTAGAGCGATGCTTGTGGCGTAAAAACCTGAGAGAGG
ACGATACTAGCATGGGATTAGTAAGCTATCCCACCAATTACACTAAGGTG
GAGTGGCTCTAGGCCACGCAAGCACTCTGTAATTGGTCGTGACGACGGAC
ACACTGCAGATTTCCACGTTGTTGAGGTCTTGGAGTGGAAAATTTGAAAT
TTTCTGTAATTGAGACAAATTGTACATAAAATGGCAATTATTTTGGACGA
CTGAAATCCTCTACATATGTTTAGTAAGTCATTTCTCATCCAATCTCCTG
AACCTATCCTGTCCAGATCCCCAGGCTCTACGAGAATAGAGTGTAACTTC
TGCTTGTTCAGCGCCTCGTAGCCATCATGTCTCCCACGGAAGACCCCAAA
ATCATCGACCTAATTAACGGCGTCGCTAAGGATGTTCTTACAAGTGAAGG
TGATGGCGCCGTCAGAGCTTCGCCGCCATTCCAGTCCCTTGAGTTCTTCC
CGCCGCGAACTGATAAGGTATATGTGCCGTCAGAAATTGTAGCCAAGTCA
GTAGCGTGGTAACTTGGCAAGTAGAAATGATAGTGTGAACCCAGTCAATG
ACCACTTGCTCGGTATTTTGTACTCCAATCAAACTACGAAACAGTCGAAG
AAGCAGAAGGGGGAGGCGCACTCTAGGTCTATTCAATAGGATCTCTTCAC
GGTGGATTCATGGGTACATGTACCGATAGTGTAGCCAACAGGCCACAATG
ACTGATTAAGCGACCAAAACGTCACCCACATGACTCTGCGATGACTGTGC
AGATATTACAAGACAGACTATCTGCAGTTCAGTACAGTCAGTACCATCAG
TACAGAGAGCACAGATCTTACCCACAAGCAATCGTGTCCACAAATCGGTG
ACTTCCGTCTCACATGCTGGATGTGATCGGTGTAAGTTTGTTGTACATGC
GTTGTACACATCAAGTCAGTTAGGGTAAGTATTCAGTAGAGCTCTATTGA
CGACAATGGCCCATTTTTGGTACTTTTGTTCAAATCTGGTGGATGTATCC
ATACTGCTGGATATACGTAGCCCCTTTTGGGCGTGGTTTACGACATTCGC
CGAGAGGTGTAGTGAGGCCGTCAAGTGCGGATTATTTCTAGCAGGCTCGT
TTGTGGCTTAGAAACGAAAACTTTAAATGTCAAGGTTTTCCTCCTTTCAA
ATACTTGGAAAAGTTGGAATTTATCCCCTGTCAACCATCGTTTTCGTCGA
TTATTTATTCAATTATGGAGAATTTTTCCGCGTTAGAGCAAATTCTGACT
CGCATGGGCTCCCAAAATTCTAGCAATTGACAAATTTCCGTTTTCCTCCG
AAAAAAAAGCCTGTTTGGATTGGTATCATGACACATTTCAGGCTGGTGTG
TCCCTTCAATCAATAAAATATTATGCTGCGATTGTCGATCCATGGGTCGA
GATGTCGACAGCGAAGTTATGTACCTCTGACACTGGACCCTCGAAAAGAG
CGAGACGAACACACGTATAGAGGAAGGCCACGTCAACAGGGTCACATAAG
AATTGCCGGTTATGTGGAAAGGCGAAAATAGTTGTATTTTCGACCAAAAG
AAACGACCTAAGCCAAGAGGAAATGCAGCTACAAGAAGAACATTGGAAAT
AGGTGCTGAGAAGATACAGGACAGGGGATCACTGGTACGGGTAACTCGGT
AATTCAAAGTTAGGACCTTTTTTTTTTTTTTTTAACTTTTTCCAGAGAAT
CCATTTTACTCAAATCCGTGATCATGAACGAGGTCATTTCCTTCCGCTTT
TCTTACTTTTTCCAAAAAATCTGTTGACTCAAATTCGTGAACAATGCACA
ACGGTACGTGACGCTCGCAGATCGATTTGCCACACTTCACACACTAAATC
AGCGAGTAGGCACCTTGCTACGAGCAGACGGCCATCCAGATTTCCTTGTT
CTGTGAGTTGCTCAAATACACAGTTGAAGAGATGTTTCGAAACGCCCATC
GGAAGTCACCAAACGCATTAGTTTACTGAGCAGTGTTCAGTTACAGTGGG
ATAACGGGTTTGACGGCAGTCTATTGGAGAGAAGTAGGCATTTAAGAGGT
GTTGAATCGCGTTGTCGCCAGTTTTTGGGGTTGTGCAGGCCAAACTTTTC
TTGAATTGAGCAGGGACGCGGAAAGTGACCAGTACCGTACATCAATCTGT
TGACACCACATGAGTTTCAATCGAGCCTACTTGGGCAGACGACCACTAAA
TATTCTTGTTTCAACATTTGTTTGTACTGATGTGCACAGCTCATAGTACG
AACATGACCACGAGTGCGTTTGTCCGACACCATTCACAATCTCTCAATAC
TGATTTTGACGGATTTAAACTGCTTTTTTATCTTAAATGAAGTAAGAAAG
GATCAAAATGCAAGAAAGAGGTTTTCGGCTTATCACCACCCCGTACACCC
ACTGTATCCCCTTTTCCCGTCGTCTTCGGCTATTTCGGAACAGAAAACAC
ACAAGATGATAACAAATAACGCTGTAGTCGTCACGCTTTGTTCTGAACTT
GGGTCTCTATACTGAACTGCCAATATGAACATTGAGGGCTTTCTGTTCCC
ATAATCATGGATGTTATAGGCATGGTGAGAGTGGATAATGACTAAGCATC
GATTACATGGGAACCGGCGCCTAAGTAGTTTGACGGAAATATGATGAGTG
TTTCACAACCGCCCATTAACCCTTCAGGAACAGGACCTGCTAACGACCAA
AAGCGAAGCGCCATAACGAGCAGTACTGAATAATGACTAAAATACGTATA
TTTGTACCAAAATTCATCAGCCATGAATCACGACAGTACAACAAAAGTGC
TAACCAGCTGCTAGTGACTGGTTATGAAATTTCAGTTTCAGTAAGTGTAT
GGGGGTACAAGTCTCTTGGGTTCAGTGTAGAAAAGCCAGGAATACCCAAA
GGGAAATAAATACCTCTACACTGCACAAGGGATTGGTTTACGAGAGCGCT
GCTTTGTGTACCATGAGGTTATTATTTATATCAACTAACTTATGATCGGT
GGTGAAGCCGTGAGAGATCTGTGCCCGACGTGGGATTGGAACATTCTGAT
GCATATTGCAACCATCACGAGACCGAGTGACTGCCCTCGGTAGCACTGAC
TGTGACTCCAGTGCATTGCATCGCTTTCGAGATCATTAGAATGTCAACCA
CCCGACAGTCGGGGCAAGTTTATCTTCTGTTGTTGCAAGAAACACACATA
CACCCAGCCGCATTTTCCCTGCGAATTCGGCGACAGTCGGGCGTCCTCGA
GGCAGTACTGTCGCCTCTGCTCCCCAGTACCTCGTGCTTTCTAAGACCAA
TGAATTTTGCTATGTCTGTACTGTGTACGACAAATGCAATATCTGGAATC
CGGTCAGGCTGTATACGACAGTACAGACATTCCTGCCTGTATTGGACGAG
AATTTGTGCACTGTCAGCTGTCTGTTACACTGACAATGCAATGCCACAAG
AAGGGCAATTTCAGTACCTCTTTTGTACTGGAGGTGATGTTTCGTTGATG
AATTGCGCTCTATGCACACATTTGGACACTACTGGTCTCCTTTTATATAT
CTGTCTGTCCTGTGGAGGGAAATCAAGATAGATCAATAAATGAAGAAGTG
TTATTGGCTGTTTACGTGTGTACTGCTGTACCGTGACGCACATTGCTCAT
ATTGTTGAAAACACGACGGTTCTTCAGCGATAGACGCAGCCCCGCTACAG
GTATGAGTAGCTTTTCATGCCTTCAACAATTCCATAGGGAGATAAGGGGC
ACAGGCCATGTAGGAGATGTCTGCTGGCAGAGTATTCCTGCTTGACCACT
TTTTCCGCATGCCTACTAGTGTATGAATTAGACTTTAGCAAGCTCTCCAC
AGCTGATTGGATGCTCAGAAGTTTCTTCCAGCCGCATGCGCTCTTCGGGT
CTGTGGTGAGAGAGATGTTTTTTGTATCGTAGTTTCATCTGCTATTACTG
TAGTTCATGAATGCTATGTTGCACTGTATTGTCGTTACTACCGCATCTTG
TAACTAGTTGACAACACTGTATTGATTCAAGCGTGTAGATCGTGAAGCGT
GTACCTTGACGGATAGAGCTAGCTCTCCGTACACAGTACATCCATCGTGC
ACAACCGGTTGGTTCAGCTGGGACCCTGCTGTCAGTGTACAACTGTCGTA
GCTTACTGGGTACTCGTAGCAGAGCCAAAGCTGCGCCCGTGTGCAGTTGG
TATTTGTCATTAACCCGCGGACTCTGCGCTTGCCATAGGCCGCTACTCTC
GCATGAAGATTCGTTTTTCAGGAGTTAAATTGAGTACAAACTTTGAAAGG
TGTTTCGAAACGATAGCCATGGTATCTCCGACCAACACCACCAGCACCTC
ATTTATACCGTATAAATGAGCAAGTTCTCGGCGAAATCAATGTTTCCAAC
AACCCAGTGATCGGTGTCATGAACACCGTTGTTTCAAAAATATTGTCACA
AAGAATCATATGTTGTCCCTGATTCCAGGACGTATGGGATACGGATGCTT
ACCCGCGGCAAGAGCGTAGCGTCCTTCGGCATATAGCACCGAATTCAGTA
CCAGATCAGTCACTGCTATTCTGGACACCACGTCAAAGCCCACTGGCTGC
ACCGGTTTGCTGTACTGACTGACTAACCTCGGGGAAAATGAGATATGGTG
TGTTCCCGTGGATCAAAGGCGACAACACGGCTTCAGGTCAAGCAAACAGA
TCACCTGCGTTGCAACCCAGATGAAACAGGAAAAAAATAGTCGCAAAATA
CGGCTTCCTACTGAAACGAGGGTGTGGGACGTGACTTTTGTCATCATCCA
GAGAGTAGCTCGCCACACGAATTCTCATGTTTGGTATCTTTCTGTCGTGT
CGTCCGACACGGTTACAGCTCCTATAACGACCTTTTGATTGAAAATTGGA
GCAGGAAATTAGATCAGCGCCAAGGAATCACGCATTGTGTAGGTGAGACT
CAAGGTTCACCGAAGTAGCAGTGCCTGGATGTTGCTGCAGACTGCCCATT
ACTTTCGCCTGGGGCGATAGATGAACTTTAGACCAGCTAAAATGAGATCG
ACATGCGTGTGAACGTGAACACGTCCTCATGCGGATTTTGGCTGTGCAGG
CGATCCGAATCCTGAAAAATGAATAGAAGAATGTATAAAATTATCAACTG
TCTGTACAGCACTCAATGTAAACTTCTCTGAAGTGCAGTTTTGACAAAAC
GCAGGTACTCTCGAAAATCTGACTCAATTTTGCCGGTACATGGGCAGTTC
TAGAGAGTTTCGGCAAACAGATGGTTTTGGGCCTGGGATTGGACCGAGAT
TTTAGGATTTTTGTGAAATATATTGAGCTTTTCCCTAATTTTGAACCTAG
ATCCATGACGTGTTCCTGAGCTAGGAAAACCGGCCAAGGGTTCTACGTCT
TTCCTAGATTGAATTTGGGGTCGCACGAGCTGGGATTACGAAGCGCACAT
GCCATCCGACCACCACATTACACGTGCATGATATAGACTTTCATCATGCA
GTATTTGGCATCGCCAGTTTCGACTGTTCGTGTTCAAGTCGTAAGGAATT
TTAGTTGTGAAGTGTCGATATGAGGTATATATTGTCGATTATTAGGTGGA
CAACTGCAGTGGTGTTGTGATCGATTTTGTGAGTATGTGGGCGGGAAGCT
GGGCTTGAATCGAGTCAGGCACGATCATGTTTCATGTTTAACTCGAACTG
GTCGTCATCCGTCGCTCGCTTCCGGGTCGCGTTCTGTAGGGACCTGGACC
GAACTATTTGATTAATTTCTCATCTTATCTCATCGATGACCCACCCGCTG
TCTTATTTTTAGCTGTTGGCGATTTTTGACGGCAACGTCATTTGGGTTCC
GCCGCGTGTAACTCTTGAGAATTTTCGCGAACTTGTTGGGCCTCGGATCT
TTTCCTAAATCTAGCTCTAATCCTTGGTCGATGTATTTTTTTCCGGAACT
TTCGTAAGCTGTCGATTCACCCTCTGGACACTTGAAAATTCCAAAGCGAT
CACCGCAGATTACATGTGATGACCCCTCTCTGAAAAATAAAGTGTCCTGT
GCTCCTTGCGCTGCCCACTTTCTCAGGGAGTGAAGAACCTGATGGATCGT
TTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1580:17933..25235+

>mRNA_H-paniculata_contig1580.3371.1 ID=mRNA_H-paniculata_contig1580.3371.1|Name=mRNA_H-paniculata_contig1580.3371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig1580:17933..25235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTTGACATACCCGAACGACAGTTCATCGCAGGGAGAGACATGAT
CCCTCTACAAGGTCAACTTGCTGCTGTGCTACGAGCACGGCACCCATTTT
TACTTTTCTCATCATGTCAGATGGCATTTGACATACCCGAACGACAGTTC
ATCGCAGGGAGAGACATGATCCCTCTACAAGGTCAACTTGCTGCTGTGCT
ACGAGCACGGCACCCATTTTTACTTTTCTCATCATGTCAGGGAGTGAAGA
ACCTGATGGATCGTTTGGGAGTGAAGAACCTGATGGATCGTTTG
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