mRNA_H-paniculata_contig158.3369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig158.3369.1
Unique NamemRNA_H-paniculata_contig158.3369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig158.3369.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.640e-12
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2 
Query:  119 NPLVDHADVLRYIMSFSSNDGYLFVAGVSRYWKLTWG-DRPKETALELALQSPSCLAWSRDCSSPWGAKICCVAAKLGNLEIL 364
            NPL D   +LR+++SF++ +G+LFVAGVSR W+  WG +RP ET ++ A+QSPS L W+R     WG  +C  AA  G+L  L
Sbjct:  726 NPLADPT-ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATL 807
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig158.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE7.640e-1248.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig158contigH-paniculata_contig158:43873..45990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue6.3e-12
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size2118
Cds size1716
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig158.3369.1prot_H-paniculata_contig158.3369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig158 43874..45589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.7315621-UTR-H-paniculata_contig158:43872..438731622929260.7315621-UTR-H-paniculata_contig158:43872..43873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig158 43873..43873 +
1691480791.5345187-UTR-H-paniculata_contig158:43872..438731691480791.5345187-UTR-H-paniculata_contig158:43872..43873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig158 43873..43873 +
1622929260.7725668-UTR-H-paniculata_contig158:45589..459901622929260.7725668-UTR-H-paniculata_contig158:45589..45990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig158 45590..45990 +
1691480791.5553064-UTR-H-paniculata_contig158:45589..459901691480791.5553064-UTR-H-paniculata_contig158:45589..45990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig158 45590..45990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.7506683-CDS-H-paniculata_contig158:43873..455891622929260.7506683-CDS-H-paniculata_contig158:43873..45589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig158 43874..45589 +
1691480791.546077-CDS-H-paniculata_contig158:43873..455891691480791.546077-CDS-H-paniculata_contig158:43873..45589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig158 43874..45589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig158.3369.1

>prot_H-paniculata_contig158.3369.1 ID=prot_H-paniculata_contig158.3369.1|Name=mRNA_H-paniculata_contig158.3369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=572bp
MRHPVTVHEVHHPIVHGEAPNVYEEADVDTGEVSRRSERNPLVDHADVLR
YIMSFSSNDGYLFVAGVSRYWKLTWGDRPKETALELALQSPSCLAWSRDC
SSPWGAKICCVAAKLGNLEILKWARAAGCDWNADTCRWAARHGNLVVLQW
CRANGCPWDEQACTDAARGGHLKAVRWCRDKGYPWSTLSCALAAGEGHLA
VLQWCRANGCPWDQSTCAHAAGGGHLEVLQWCRANGCPWDADTCARAAGG
GQVVVLRWCWENGCPWDECTCEGAAGGGHLEVLQWCRAHDCPWDDRTCES
AATAGHIEVLQWCRANDCPWDHLTCACAAASGHLQILKWCRTNGCYWDEW
TCVRAAENGHLDVLKWCRANGCPWFQGACSIPAGKGLLEVVQWCRVNGCP
WDERTCESAAGGGHLDVLKWCRANGCPWDEETCARAAGGGHLNVLKWCRA
NGCPSDEETCAHAAGGGHLDVLKWCRANGCPWHEKTCARAAGGGHLDVLK
WCRANGCPQDEKTRAVGRNLWQVVQRCRSNRFSFESFPGFEDEVLLDVSV
LLFVPCLVLLCITISLVVFVL*
back to top

mRNA from alignment at H-paniculata_contig158:43873..45990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig158.3369.1 ID=mRNA_H-paniculata_contig158.3369.1|Name=mRNA_H-paniculata_contig158.3369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2118bp|location=Sequence derived from alignment at H-paniculata_contig158:43873..45990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCGCCACCCCGTCACTGTGCACGAAGTCCATCACCCTATCGTTCATG
GAGAAGCCCCGAATGTTTACGAGGAAGCAGATGTAGACACAGGCGAGGTA
TCGAGGCGTTCGGAGAGAAACCCCCTAGTCGATCATGCCGACGTTCTTCG
GTACATTATGTCATTCTCTAGCAACGATGGATATCTGTTCGTTGCCGGGG
TGTCGCGGTACTGGAAATTGACCTGGGGGGATCGACCAAAGGAGACTGCG
TTGGAATTGGCGCTGCAGTCGCCCTCTTGCTTGGCTTGGAGTCGGGATTG
CTCTAGTCCTTGGGGCGCAAAGATATGCTGCGTAGCGGCAAAGCTTGGCA
ATCTGGAGATTCTCAAGTGGGCTCGAGCTGCAGGATGTGACTGGAATGCT
GACACATGCCGGTGGGCTGCTAGACACGGAAATCTAGTGGTCCTACAGTG
GTGTAGGGCTAATGGTTGCCCTTGGGACGAACAGGCATGTACGGATGCTG
CTAGAGGAGGACATCTGAAGGCGGTGCGGTGGTGCAGAGACAAAGGTTAC
CCTTGGAGTACATTGTCATGCGCGCTTGCTGCTGGAGAGGGACACCTCGC
GGTGCTGCAATGGTGTAGAGCAAATGGATGTCCTTGGGACCAATCGACGT
GTGCCCATGCTGCTGGAGGGGGACATCTCGAGGTGTTGCAGTGGTGTAGA
GCCAATGGATGCCCTTGGGACGCGGATACGTGCGCCCGTGCTGCTGGGGG
GGGGCAGGTGGTGGTGCTGCGGTGGTGTTGGGAAAACGGATGCCCTTGGG
ACGAGTGCACGTGCGAAGGTGCTGCTGGCGGCGGACACCTGGAGGTGTTG
CAATGGTGTAGGGCTCATGACTGCCCTTGGGACGACCGGACATGTGAATC
CGCTGCTACAGCTGGACACATAGAGGTGCTGCAATGGTGTAGGGCTAACG
ACTGCCCCTGGGACCACCTGACGTGTGCTTGTGCTGCTGCAAGTGGGCAC
CTCCAGATATTGAAGTGGTGCCGGACTAACGGTTGTTATTGGGACGAATG
GACGTGTGTCCGTGCTGCTGAAAATGGACACCTGGATGTGCTCAAGTGGT
GTAGGGCTAATGGTTGTCCTTGGTTCCAAGGGGCATGCTCCATTCCCGCT
GGAAAGGGCCTTCTGGAGGTGGTGCAATGGTGTAGGGTAAACGGTTGTCC
TTGGGACGAGCGCACGTGCGAGAGTGCTGCTGGAGGGGGACACTTAGATG
TACTCAAGTGGTGTAGGGCAAACGGGTGCCCATGGGACGAAGAGACATGT
GCCCGTGCTGCTGGAGGGGGACACCTGAATGTACTGAAGTGGTGTAGGGC
AAACGGGTGCCCATCGGACGAAGAGACATGTGCCCATGCCGCTGGAGGGG
GACACTTGGATGTGCTCAAGTGGTGTAGAGCAAACGGATGCCCTTGGCAT
GAAAAAACATGTGCCCGTGCCGCTGGAGGGGGACACTTGGATGTGCTAAA
GTGGTGTAGGGCGAACGGTTGTCCTCAGGACGAAAAAACGCGTGCTGTTG
GCAGAAACTTGTGGCAGGTGGTTCAGCGGTGTAGATCAAATCGGTTTTCG
TTTGAATCATTTCCAGGCTTCGAAGATGAGGTTCTGTTGGATGTGTCTGT
GCTTTTGTTCGTTCCGTGTTTGGTACTACTCTGCATAACCATTTCGCTAG
TTGTGTTCGTTCTATAAAGTTGAAGGTCATTTCCTTGTTTGGTTAACGTA
TCAACCACAATGGTTTCAGCGGAATGAGGACAAATTGCTGACGTCGCGTG
GATGTCGTGGATTACTATATGTAGCTGTGAGGGAGGGTATTTATTTCTCG
AGTGAGCTCGGACGTTTCCTGCTTGCAAGGGGGGGCAACGTTCATTTGGT
GAAATTGAGAGTAAAGCAAGTCATACATCGATGCACATATGCAAATCTAC
GATACGTACAGTATATTACTCCAGGTATTTAGGTAGCTCAACAGATAGTA
AGGATATGGTTACTTACTTGCTTACGGGGATTCACTGCACAGGATCTCCG
ATACCGTCATTCGTTACATACACGAACCGATATGTACACACATACAGTCC
CCAGGACTTCTAGGTTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig158:43873..45990+

>mRNA_H-paniculata_contig158.3369.1 ID=mRNA_H-paniculata_contig158.3369.1|Name=mRNA_H-paniculata_contig158.3369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3432bp|location=Sequence derived from alignment at H-paniculata_contig158:43873..45990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCACCCCGTCACTGTGCACGAAGTCCATCACCCTATCGTTCATGG
AGAAGCCCCGAATGTTTACGAGGAAGCAGATGTAGACACAGGCGAGGTAT
CGAGGCGTTCGGAGAGAAACCCCCTAGTCGATCATGCCGACGTTCTTCGG
TACATTATGTCATTCTCTAGCAACGATGGATATCTGTTCGTTGCCGGGGT
GTCGCGGTACTGGAAATTGACCTGGGGGGATCGACCAAAGGAGACTGCGT
TGGAATTGGCGCTGCAGTCGCCCTCTTGCTTGGCTTGGAGTCGGGATTGC
TCTAGTCCTTGGGGCGCAAAGATATGCTGCGTAGCGGCAAAGCTTGGCAA
TCTGGAGATTCTCAAGTGGGCTCGAGCTGCAGGATGTGACTGGAATGCTG
ACACATGCCGGTGGGCTGCTAGACACGGAAATCTAGTGGTCCTACAGTGG
TGTAGGGCTAATGGTTGCCCTTGGGACGAACAGGCATGTACGGATGCTGC
TAGAGGAGGACATCTGAAGGCGGTGCGGTGGTGCAGAGACAAAGGTTACC
CTTGGAGTACATTGTCATGCGCGCTTGCTGCTGGAGAGGGACACCTCGCG
GTGCTGCAATGGTGTAGAGCAAATGGATGTCCTTGGGACCAATCGACGTG
TGCCCATGCTGCTGGAGGGGGACATCTCGAGGTGTTGCAGTGGTGTAGAG
CCAATGGATGCCCTTGGGACGCGGATACGTGCGCCCGTGCTGCTGGGGGG
GGGCAGGTGGTGGTGCTGCGGTGGTGTTGGGAAAACGGATGCCCTTGGGA
CGAGTGCACGTGCGAAGGTGCTGCTGGCGGCGGACACCTGGAGGTGTTGC
AATGGTGTAGGGCTCATGACTGCCCTTGGGACGACCGGACATGTGAATCC
GCTGCTACAGCTGGACACATAGAGGTGCTGCAATGGTGTAGGGCTAACGA
CTGCCCCTGGGACCACCTGACGTGTGCTTGTGCTGCTGCAAGTGGGCACC
TCCAGATATTGAAGTGGTGCCGGACTAACGGTTGTTATTGGGACGAATGG
ACGTGTGTCCGTGCTGCTGAAAATGGACACCTGGATGTGCTCAAGTGGTG
TAGGGCTAATGGTTGTCCTTGGTTCCAAGGGGCATGCTCCATTCCCGCTG
GAAAGGGCCTTCTGGAGGTGGTGCAATGGTGTAGGGTAAACGGTTGTCCT
TGGGACGAGCGCACGTGCGAGAGTGCTGCTGGAGGGGGACACTTAGATGT
ACTCAAGTGGTGTAGGGCAAACGGGTGCCCATGGGACGAAGAGACATGTG
CCCGTGCTGCTGGAGGGGGACACCTGAATGTACTGAAGTGGTGTAGGGCA
AACGGGTGCCCATCGGACGAAGAGACATGTGCCCATGCCGCTGGAGGGGG
ACACTTGGATGTGCTCAAGTGGTGTAGAGCAAACGGATGCCCTTGGCATG
AAAAAACATGTGCCCGTGCCGCTGGAGGGGGACACTTGGATGTGCTAAAG
TGGTGTAGGGCGAACGGTTGTCCTCAGGACGAAAAAACGCGTGCTGTTGG
CAGAAACTTGTGGCAGGTGGTTCAGCGGTGTAGATCAAATCGGTTTTCGT
TTGAATCATTTCCAGGCTTCGAAGATGAGGTTCTGTTGGATGTGTCTGTG
CTTTTGTTCGTTCCGTGTTTGGTACTACTCTGCATAACCATTTCGCTAGT
TGTGTTCGTTCTATAAATGCGCCACCCCGTCACTGTGCACGAAGTCCATC
ACCCTATCGTTCATGGAGAAGCCCCGAATGTTTACGAGGAAGCAGATGTA
GACACAGGCGAGGTATCGAGGCGTTCGGAGAGAAACCCCCTAGTCGATCA
TGCCGACGTTCTTCGGTACATTATGTCATTCTCTAGCAACGATGGATATC
TGTTCGTTGCCGGGGTGTCGCGGTACTGGAAATTGACCTGGGGGGATCGA
CCAAAGGAGACTGCGTTGGAATTGGCGCTGCAGTCGCCCTCTTGCTTGGC
TTGGAGTCGGGATTGCTCTAGTCCTTGGGGCGCAAAGATATGCTGCGTAG
CGGCAAAGCTTGGCAATCTGGAGATTCTCAAGTGGGCTCGAGCTGCAGGA
TGTGACTGGAATGCTGACACATGCCGGTGGGCTGCTAGACACGGAAATCT
AGTGGTCCTACAGTGGTGTAGGGCTAATGGTTGCCCTTGGGACGAACAGG
CATGTACGGATGCTGCTAGAGGAGGACATCTGAAGGCGGTGCGGTGGTGC
AGAGACAAAGGTTACCCTTGGAGTACATTGTCATGCGCGCTTGCTGCTGG
AGAGGGACACCTCGCGGTGCTGCAATGGTGTAGAGCAAATGGATGTCCTT
GGGACCAATCGACGTGTGCCCATGCTGCTGGAGGGGGACATCTCGAGGTG
TTGCAGTGGTGTAGAGCCAATGGATGCCCTTGGGACGCGGATACGTGCGC
CCGTGCTGCTGGGGGGGGGCAGGTGGTGGTGCTGCGGTGGTGTTGGGAAA
ACGGATGCCCTTGGGACGAGTGCACGTGCGAAGGTGCTGCTGGCGGCGGA
CACCTGGAGGTGTTGCAATGGTGTAGGGCTCATGACTGCCCTTGGGACGA
CCGGACATGTGAATCCGCTGCTACAGCTGGACACATAGAGGTGCTGCAAT
GGTGTAGGGCTAACGACTGCCCCTGGGACCACCTGACGTGTGCTTGTGCT
GCTGCAAGTGGGCACCTCCAGATATTGAAGTGGTGCCGGACTAACGGTTG
TTATTGGGACGAATGGACGTGTGTCCGTGCTGCTGAAAATGGACACCTGG
ATGTGCTCAAGTGGTGTAGGGCTAATGGTTGTCCTTGGTTCCAAGGGGCA
TGCTCCATTCCCGCTGGAAAGGGCCTTCTGGAGGTGGTGCAATGGTGTAG
GGTAAACGGTTGTCCTTGGGACGAGCGCACGTGCGAGAGTGCTGCTGGAG
GGGGACACTTAGATGTACTCAAGTGGTGTAGGGCAAACGGGTGCCCATGG
GACGAAGAGACATGTGCCCGTGCTGCTGGAGGGGGACACCTGAATGTACT
GAAGTGGTGTAGGGCAAACGGGTGCCCATCGGACGAAGAGACATGTGCCC
ATGCCGCTGGAGGGGGACACTTGGATGTGCTCAAGTGGTGTAGAGCAAAC
GGATGCCCTTGGCATGAAAAAACATGTGCCCGTGCCGCTGGAGGGGGACA
CTTGGATGTGCTAAAGTGGTGTAGGGCGAACGGTTGTCCTCAGGACGAAA
AAACGCGTGCTGTTGGCAGAAACTTGTGGCAGGTGGTTCAGCGGTGTAGA
TCAAATCGGTTTTCGTTTGAATCATTTCCAGGCTTCGAAGATGAGGTTCT
GTTGGATGTGTCTGTGCTTTTGTTCGTTCCGTGTTTGGTACTACTCTGCA
TAACCATTTCGCTAGTTGTGTTCGTTCTATAA
back to top