mRNA_H-paniculata_contig15798.3365.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15798.3365.1
Unique NamemRNA_H-paniculata_contig15798.3365.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.960e-32
Identity = 77/100 (77.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    4 RAAEAGAGVMAGK---FKKKALSVVDSVSVLSS-SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR 291
            + AEAGA  MA K    K+KALSVVD+V  LSS ++SSNSCTITVKSSPPRTAAEMTKLSVRRGWM K+N+Q AWQRRYCCLVPHTFLYYFESKD+E  R
Sbjct:   50 KVAEAGAEAMASKADRLKQKALSVVDTVQTLSSGTDSSNSCTITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPR 149
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.100e-31
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:   34 AGKFKKKALSVVDSVSVLSSS-NSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR 291
            A + K+KALSVVD+V  LSSS +SSNSCTITVKSSPPRTAAEMTKLSVRRGWM K+N+Q AWQRRYCCLVPHTFLYYFESKD+E  R
Sbjct:   58 ADRLKQKALSVVDTVQTLSSSTDSSNSCTITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEVPR 144
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: F0YMI3_AURAN (PH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMI3_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 5.190e-15
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   97 NSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR 291
            NSSN+ T+T+KSSPP+TAA  T+L VR G + KRNEQ+ WQRRYC LVP T LYY++ + SE+ R
Sbjct:   11 NSSNNTTLTIKSSPPKTAAVATRLGVRTGVLTKRNEQQVWQRRYCALVPQTLLYYYDGEHSESAR 75
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A7S4IVE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVE8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.760e-14
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   94 SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESK 273
            SN + +CTI  KS+PPRT   MT LSV+ GW++KRNEQ  WQRR+CC+VPHTFLYYFE++
Sbjct:   37 SNLNTTCTI--KSAPPRTPEVMTMLSVKSGWLVKRNEQHVWQRRWCCVVPHTFLYYFEAE 94
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.180e-14
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   40 KFKKKALSVVDSVSVLSSSNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR 291
            +F KKA+S+     +   SN S+S T+ VKSSP R A    +L VR GW+LKRNEQR WQ R+C +VPHT+LYYFES++S A R
Sbjct:    7 RFAKKAISLGG---LGLGSNDSHSSTLVVKSSPLRDAQTTKRLGVRSGWLLKRNEQRVWQPRFCVMVPHTYLYYFESENSAAPR 87
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A7S2M8C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8C0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.690e-14
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   94 SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESK 273
            SN + +CTI  KS+PPRT   M+ LS + GW++KRNEQ  WQ+R+CC+VPHTFLYYFE+ 
Sbjct:   37 SNLNTTCTI--KSAPPRTPEVMSMLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEAS 94
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A1E7FMA5_9STRA (PH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMA5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.380e-13
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   94 SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR 291
            SN + +CTI  KS+PPRT   +  LSV+ GW+ KRNEQ  WQ RYCC+VPHTFLYYF+S  +  C+
Sbjct:   35 SNLNTTCTI--KSAPPRTPDVLGMLSVKSGWLFKRNEQHVWQARYCCVVPHTFLYYFDSHPTNPCQ 98
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A7S2K1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1M2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.160e-13
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   94 SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSE 282
            SN + +CTI  KS+PPRT   MTKL+ + GW+ KRNEQ  WQ+R+CC+VPHTFLYYF+S+  +
Sbjct:   58 SNLNTTCTI--KSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDSEPVD 118
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A7S2K3B6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3B6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.420e-13
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   94 SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSE 282
            SN + +CTI  KS+PPRT   MTKL+ + GW+ KRNEQ  WQ+R+CC+VPHTFLYYF+S+  +
Sbjct:   58 SNLNTTCTI--KSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDSEPVD 118
[Close]
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Match: A0A448ZEE1_9STRA (PH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEE1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.250e-12
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   94 SNSSNSCTITVKSSPPRTAAEMTKLSVRRGWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR 291
            SN + +CTI  KS+PPRT A +  L+ + GW+ KRNEQ  WQ RYCC+VPHTFLYYF+   +  C+
Sbjct:   35 SNLNTTCTI--KSAPPRTPAVLGMLANKSGWLFKRNEQHIWQARYCCVVPHTFLYYFDQHPTNPCQ 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15798.3365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JHM0_9PHAE1.960e-3277.00PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCP7_ECTSI3.100e-3181.61PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
F0YMI3_AURAN5.190e-1561.54PH domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A7S4IVE8_9STRA1.760e-1465.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A835Z0T3_9STRA2.180e-1454.76PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2M8C0_9STRA6.690e-1460.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1E7FMA5_9STRA1.380e-1357.58PH domain-containing protein n=1 Tax=Fragilariopsi... [more]
A0A7S2K1M2_9STRA6.160e-1358.73Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2K3B6_9STRA9.420e-1358.73Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZEE1_9STRA2.250e-1254.55PH domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15798contigH-paniculata_contig15798:144..2008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.7e-31
Seed eggNOG ortholog2880.D8LCP7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2E9MN@1,2SFYW@2759
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-03_002090.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1500
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15798.3365.1prot_H-paniculata_contig15798.3365.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15798 1350..1978 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.5210648-UTR-H-paniculata_contig15798:143..13491622929260.5210648-UTR-H-paniculata_contig15798:143..1349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15798 144..1349 -
1691480791.4720292-UTR-H-paniculata_contig15798:143..13491691480791.4720292-UTR-H-paniculata_contig15798:143..1349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15798 144..1349 -
1622929260.5748763-UTR-H-paniculata_contig15798:1978..20081622929260.5748763-UTR-H-paniculata_contig15798:1978..2008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15798 1979..2008 -
1691480791.50373-UTR-H-paniculata_contig15798:1978..20081691480791.50373-UTR-H-paniculata_contig15798:1978..2008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15798 1979..2008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.5365472-CDS-H-paniculata_contig15798:1349..15141622929260.5365472-CDS-H-paniculata_contig15798:1349..1514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15798 1350..1514 -
1691480791.483503-CDS-H-paniculata_contig15798:1349..15141691480791.483503-CDS-H-paniculata_contig15798:1349..1514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15798 1350..1514 -
1622929260.556284-CDS-H-paniculata_contig15798:1879..19781622929260.556284-CDS-H-paniculata_contig15798:1879..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15798 1880..1978 -
1691480791.4950042-CDS-H-paniculata_contig15798:1879..19781691480791.4950042-CDS-H-paniculata_contig15798:1879..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15798 1880..1978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15798.3365.1

>prot_H-paniculata_contig15798.3365.1 ID=prot_H-paniculata_contig15798.3365.1|Name=mRNA_H-paniculata_contig15798.3365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MAGKFKKKALSVVDSVSVLSSSNSSNSCTITVKSSPPRTAAEMTKLSVRR
GWMLKRNEQRAWQRRYCCLVPHTFLYYFESKDSEACR*
back to top

mRNA from alignment at H-paniculata_contig15798:144..2008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15798.3365.1 ID=mRNA_H-paniculata_contig15798.3365.1|Name=mRNA_H-paniculata_contig15798.3365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1865bp|location=Sequence derived from alignment at H-paniculata_contig15798:144..2008- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGGGCCGCAGAAGCCGGCGCTGGAGTGATGGCGGGGAAGTTCAAAAA
GAAGGCGTTGTCGGTTGTGGACAGCGTAAGCGTTTTGTCATCTTCCAACA
GTAGCAATTCGTGTACCATCACCGTCAAGGTAATGGTTGCAGTCAGGATT
TTTATGTTCTGGCTATGGTCCTGGGAGGGGCTTGGCACCATATATCACCC
CCCCCCCCCCCCTCCCTCTTGAACAGTAAATATTGTCATTCCGAATCGTG
CGTTGTGCACTTGTAGGGATGCTTGGACGTATGCCAATTGAAGAGTATTT
TATGTGGAGTGTTTTTCGAGCTGAGTTGTGAAGCGGCGCTCGATAAACAT
CCCCAAGTCTTTTCAGTTTGCCGATATAAGTGATCCAGCAACTTGAGGAT
GCTGTGCATACCTCTATTTTTTGCTTTATTCGAATTTTGGTTTATTTATG
GTCAACCCGGTTTGTACACGCACGTCTGATTTGTTGTTTTTCAGAGCTCT
CCCCCGCGAACTGCGGCGGAGATGACCAAGCTCTCCGTAAGGCGCGGCTG
GATGCTGAAGCGCAATGAGCAGCGGGCTTGGCAGCGACGATATTGCTGCC
TCGTCCCTCACACATTCCTGTACTACTTCGAATCCAAGGACTCAGAGGCA
TGTCGATGATGAAATGCCCCCCTTATTGATGGAATTTTCTCATAAGTGTA
CACATCTACAGATAGGAGTCGGCTACATGGCCTCAACATGGGTACAATGG
AATTATGATATGAGGGTCAGAGTTATAATGCAACTCATTGGCAAAAGGTG
ATTTACTACAACAGCGAGAATTTTACTTTGCAAAATGGAGCATTGTTTGC
AAATTTTTATGCTGTTGGTCGTTCACAAGAGAGGACCATTTCGTGTTTGA
CCTAGAGCACACATGCGAGTGATATAGTCTATGATATTGCCTTGTGAAGG
TTGCTGTAGTCCGTGTCGTCCGTGTTCGAAGATGCGCGTAGTTTTTTCCG
GTACTTGGTCATGGTGTGGCCAGAATTTTGGTCATATGAAAAGGATCCTG
TCGATTTATCAAGCTGCATATTGATTCTTCAGGTCTATTCAGTAATTCAA
TTCACCTGCTCTCCCCCCCCCCATGCGGTGTACCCGGGGTGTCCATAAAT
CCGTAGCAGAATCCGGGTGGTGTAGCAATGCCAGAAGTTCACTAGTGGCT
AGCATCAATCACCCTTGTGAAACCCATCCTGGCTGGCGAAAACCCAGTAG
TCTCCGTCTCGGTGTTACAAGGAGGGTTAATGGTGCGGAAGCTATGGCAT
GCGTTGTTATTGGTACACGTCCTCTCCCCCCCCCCACTCCGAGAGTTGAT
ACATGATTTTGTTGATTAGTGCAGGCAACGGAGATTTGAAGTAAGCTGAA
TAGCCTCAACAGAGGTAATGTACGATGGAGTGACAATATGAATTTGATAA
GAGCTATTGACTACGGTAAATGAGTTGCTTGGGGTAGTGAACGTGACTTG
TGGTTGAGTTTGTTGGTTTATGTTCTTTATTTCAGGTGTTTTACATATGT
AAGCCATATTCCATGTCATATCTCCGCGTAAGTTCACACGCGAGTGGTAC
AGGCAGTGATGCTGCCTTGTGAAGGTGTTGTTCGTGCCTGATCGAAGAGG
TGCGAGAAGTCCTGGTTCTCGGGTTTATGGTAAGGTCAAAACGTATGCGA
TGTCCTCCTTGTCGGGTCATGATATAATATTCCTCATAAAGTGTACACAG
CTGAAGTTTGAGGTCAATTGCATAGTTTACATGTACGATGAAGTTATTAT
ACGAGCATTACAGTTCTACTAACTGTGGCACATGGGTTGACTTGTGATAA
CTGTTGCTAGCGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15798:144..2008-

>mRNA_H-paniculata_contig15798.3365.1 ID=mRNA_H-paniculata_contig15798.3365.1|Name=mRNA_H-paniculata_contig15798.3365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig15798:144..2008- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGGAAGTTCAAAAAGAAGGCGTTGTCGGTTGTGGACAGCGTAAG
CGTTTTGTCATCTTCCAACAGTAGCAATTCGTGTACCATCACCGTCAAGA
TGGCGGGGAAGTTCAAAAAGAAGGCGTTGTCGGTTGTGGACAGCGTAAGC
GTTTTGTCATCTTCCAACAGTAGCAATTCGTGTACCATCACCGTCAAGAG
CTCTCCCCCGCGAACTGCGGCGGAGATGACCAAGCTCTCCGTAAGGCGCG
GCTGGATGCTGAAGCGCAATGAGCAGCGGGCTTGGCAGCGACGATATTGC
TGCCTCGTCCCTCACACATTCCTGTACTACTTCGAATCCAAGGACTCAGA
GGCATGTCGATGAAGCTCTCCCCCGCGAACTGCGGCGGAGATGACCAAGC
TCTCCGTAAGGCGCGGCTGGATGCTGAAGCGCAATGAGCAGCGGGCTTGG
CAGCGACGATATTGCTGCCTCGTCCCTCACACATTCCTGTACTACTTCGA
ATCCAAGGACTCAGAGGCATGTCGATGA
back to top