mRNA_H-paniculata_contig15796.3363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15796.3363.1
Unique NamemRNA_H-paniculata_contig15796.3363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15796.3363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15796contigH-paniculata_contig15796:2397..3623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size918
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15796.3363.1prot_H-paniculata_contig15796.3363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15796 2742..3623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.2860742-UTR-H-paniculata_contig15796:2396..27411622929260.2860742-UTR-H-paniculata_contig15796:2396..2741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15796 2397..2741 +
1691480791.3880293-UTR-H-paniculata_contig15796:2396..27411691480791.3880293-UTR-H-paniculata_contig15796:2396..2741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15796 2397..2741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.3052323-CDS-H-paniculata_contig15796:2741..28161622929260.3052323-CDS-H-paniculata_contig15796:2741..2816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15796 2742..2816 +
1691480791.3955452-CDS-H-paniculata_contig15796:2741..28161691480791.3955452-CDS-H-paniculata_contig15796:2741..2816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15796 2742..2816 +
1622929260.3263757-CDS-H-paniculata_contig15796:3125..36231622929260.3263757-CDS-H-paniculata_contig15796:3125..3623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15796 3126..3623 +
1691480791.4048958-CDS-H-paniculata_contig15796:3125..36231691480791.4048958-CDS-H-paniculata_contig15796:3125..3623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15796 3126..3623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15796.3363.1

>prot_H-paniculata_contig15796.3363.1 ID=prot_H-paniculata_contig15796.3363.1|Name=mRNA_H-paniculata_contig15796.3363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
METQRRTFAIVPAQGQPNDQFLLEQALEKLQQCQVGEKKLRINYLFGCVG
HGRFLINLKSKATGRLAESIVKDALGARCEAIPFETKRRGEKFIPGRSLR
KRAAARKGNATIEREAAQVFGSYHGVALLLADGGKTETYQYDGAVGLMLG
AKDDQKTDLAANVSRDAVRGAVSSIPPLSTQEILHIQVSA*
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mRNA from alignment at H-paniculata_contig15796:2397..3623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15796.3363.1 ID=mRNA_H-paniculata_contig15796.3363.1|Name=mRNA_H-paniculata_contig15796.3363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1227bp|location=Sequence derived from alignment at H-paniculata_contig15796:2397..3623+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCTTTCAGACAAGCACCGCGGGCAGAGTATTATTTGCTTGCGTTGTGT
GGCCTGAGAAACGATGCCCTCCTAATGGTCACTTGCTCGCTTCTTATTAT
TTTTTTCGTTGCTTTCTTCAGAGCTGTTATATTTTATTTCAGTGCATGTG
TGTGTCCCCATCGCTTGTCCAACGATTTTGCCTCACACTGAAGAGTTCGT
TGGTCCTAACTAAGGCGCTGACCCGCACACGCCTCTCTATTGGCAGGTCA
CAACTGATCAGTGCACACCCCCTGCGCCTTACAACACTTGGCCTTCAAAC
CCGCAGCAACGGAGAACAAATAATTGCCTTGACAGTGACCGCCCAATGGA
GACGCAACGAAGGACTTTCGCGATAGTACCTGCCCAAGGCCAGCCGAACG
ATCAATTTTTGCTCGAGCAGGTTACATTCATCCACCACGTTTTTTTTCGA
ATTTTGGACTGATATCAGATGTTGAGATATTGAGCTAGAGATTCATTAAC
GGTCCTCGAAATCCAAGCCGGTTTAATTTTTTCATTTCGTTTATATTTCT
ACCACTCAAGGCCTCTGGGGATGACAGTCTTTCTTTAAGAATCTCAAGTA
CTTCGTTCGTGTAGTCGCTGTGACTACTATGCACGCGAGCTTTATTTCAG
CAGGGTCATATATTTTTTCTATATAATCCCCGTAGCTGGTCTCCTTGACT
TGTCCCTGCAAACGCTCGCACCATGACAGGCCTTGGAAAAATTGCAGCAG
TGCCAAGTCGGCGAGAAGAAGCTACGCATCAACTACCTGTTCGGCTGCGT
GGGTCACGGTAGGTTCCTGATTAATCTCAAGAGCAAAGCGACGGGACGCC
TGGCCGAATCAATAGTAAAGGATGCGCTGGGTGCACGATGCGAAGCAATA
CCGTTCGAAACTAAACGGAGAGGTGAAAAGTTCATTCCTGGTCGAAGCTT
GAGGAAACGCGCGGCTGCTAGAAAAGGTAACGCAACCATCGAACGGGAAG
CGGCGCAAGTATTCGGTTCTTACCATGGCGTTGCTCTTCTGCTGGCGGAT
GGCGGCAAGACCGAGACGTATCAATACGACGGCGCGGTGGGTTTGATGCT
GGGCGCAAAAGACGACCAGAAAACAGACCTTGCAGCTAACGTGAGCAGGG
ACGCGGTGCGAGGAGCCGTATCTTCGATACCTCCTTTGTCGACACAAGAA
ATACTTCACATACAGGTCAGCGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15796:2397..3623+

>mRNA_H-paniculata_contig15796.3363.1 ID=mRNA_H-paniculata_contig15796.3363.1|Name=mRNA_H-paniculata_contig15796.3363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig15796:2397..3623+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGCAACGAAGGACTTTCGCGATAGTACCTGCCCAAGGCCAGCC
GAACGATCAATTTTTGCTCGAGCAGATGGAGACGCAACGAAGGACTTTCG
CGATAGTACCTGCCCAAGGCCAGCCGAACGATCAATTTTTGCTCGAGCAG
GCCTTGGAAAAATTGCAGCAGTGCCAAGTCGGCGAGAAGAAGCTACGCAT
CAACTACCTGTTCGGCTGCGTGGGTCACGGTAGGTTCCTGATTAATCTCA
AGAGCAAAGCGACGGGACGCCTGGCCGAATCAATAGTAAAGGATGCGCTG
GGTGCACGATGCGAAGCAATACCGTTCGAAACTAAACGGAGAGGTGAAAA
GTTCATTCCTGGTCGAAGCTTGAGGAAACGCGCGGCTGCTAGAAAAGGTA
ACGCAACCATCGAACGGGAAGCGGCGCAAGTATTCGGTTCTTACCATGGC
GTTGCTCTTCTGCTGGCGGATGGCGGCAAGACCGAGACGTATCAATACGA
CGGCGCGGTGGGTTTGATGCTGGGCGCAAAAGACGACCAGAAAACAGACC
TTGCAGCTAACGTGAGCAGGGACGCGGTGCGAGGAGCCGTATCTTCGATA
CCTCCTTTGTCGACACAAGAAATACTTCACATACAGGTCAGCGCATGAGC
CTTGGAAAAATTGCAGCAGTGCCAAGTCGGCGAGAAGAAGCTACGCATCA
ACTACCTGTTCGGCTGCGTGGGTCACGGTAGGTTCCTGATTAATCTCAAG
AGCAAAGCGACGGGACGCCTGGCCGAATCAATAGTAAAGGATGCGCTGGG
TGCACGATGCGAAGCAATACCGTTCGAAACTAAACGGAGAGGTGAAAAGT
TCATTCCTGGTCGAAGCTTGAGGAAACGCGCGGCTGCTAGAAAAGGTAAC
GCAACCATCGAACGGGAAGCGGCGCAAGTATTCGGTTCTTACCATGGCGT
TGCTCTTCTGCTGGCGGATGGCGGCAAGACCGAGACGTATCAATACGACG
GCGCGGTGGGTTTGATGCTGGGCGCAAAAGACGACCAGAAAACAGACCTT
GCAGCTAACGTGAGCAGGGACGCGGTGCGAGGAGCCGTATCTTCGATACC
TCCTTTGTCGACACAAGAAATACTTCACATACAGGTCAGCGCATGA
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