mRNA_H-paniculata_contig15792.3360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15792.3360.1
Unique NamemRNA_H-paniculata_contig15792.3360.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: D8LLB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB0_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 6.310e-84
Identity = 220/297 (74.07%), Postives = 237/297 (79.80%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVTTSTG-SRERSSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDGAAGAAGEDPLAGTVGGLIPGSNISILPSFMDELKTRASIPVRSVVEPALPVYCSAGAASGRGDGRGXXXXXXXXXXXEWGG----VGVEPVYKFRLRGRIGRGGRVIWDRVPVEAAPPARDDGLADPEDAPHFVHSNYVQFPFKPPPACSLHPPMVNLHADERRYREICAMDDEQEEMLEPLGLGLTGGDS 876
            VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEK         ER+S+R  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXX   G   + GED   G   G+IPGS++++LPSFMD+LKTR SIPVR+VVEPAL VY + G    +G    XXXXXXXXXXX        VGVEPVYKFRLRGRIGRGGRVIWDRVPV  A PAR+DGLADPE+AP  VHS+YVQFPFKPP A  LHPPMVNL+ADERRYREICAMDD+QEEMLEPLGLGL G  S
Sbjct:  184 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKQQLERSRDGERTSSRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHYGDEXXXXXXXXXXXXXXXX---GGVASVGED--GGGSFGIIPGSHVTVLPSFMDDLKTRESIPVRTVVEPALAVYTALGGRDAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSYVQFPFKPPSAHVLHPPMVNLNADERRYREICAMDDDQEEMLEPLGLGLLGNSS 475
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: A0A835YT95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT95_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.520e-14
Identity = 84/235 (35.74%), Postives = 105/235 (44.68%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVTTS---TGSRERSS------------------TRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDGAAGAAGEDPLAGTVGGLIPGSNISILPSFMDELKTRASIPVRSVVEPALPVYCSAGAASGRGDGRGXXXXXXXXXXXEWGGVGVEPVYKFRLRGRIGRGGRVIWDRVPV 642
            VFRPREKERYKLR+ R N+L+SF K+QQ+K+DF+K+ +    T +RER                    T                                         XXXXXXXXXXX RG+ + G   + P A  VG  + G + ++LPSFMD    R    +   VEPALP +   G                            EPV KFR RGRIGRGGRV++DRVPV
Sbjct:  193 VFRPREKERYKLRRSRVNELESFNKMQQLKQDFDKLLSILELTRTRERIKQAALAVQQEVFDQAVYDLTNTSGEPRQLNIKPGEFKLKMRPPRPVVQALENFDEAAERLKXXXXXXXXXXXSRGEPSTG---QRPAAAAVGEGV-GEDTALLPSFMDNFMNRTKASMSGRVEPALPAFTVRGIC--------------------------EPVTKFRCRGRIGRGGRVVFDRVPV 397
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: A0A0W8D8R8_PHYNI (Hematopoietic prostaglandin D synthase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D8R8_PHYNI)

HSP 1 Score: 70.5 bits (171), Expect = 1.340e-9
Identity = 99/328 (30.18%), Postives = 133/328 (40.55%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVTTSTG---SRERSST-----------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDGAAGAAGEDPLAGTVGGLIPGSNISILPSFMDELKTRASIPVRSVVEP-----ALPVYCSAGAASGRGDGRGXXXXXXXXXXXEWGGVGVEPVYKFRLRGRIGRGGRVIWDRVPVEAA-------------------PPARDDGLADPEDAPHF------VHSNYVQFPFKPPPACSLHPPMVNLH-ADERRYREICAMDDEQEEMLEPL 849
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V         RER+             +                             XXXXXXXX                GD   GA  +   AGT    + G  I+  P+FM E  T A+  +    +      + PVY S   +  R                    +  +P  K+R RGRIGRGGR++ DR+PV  +                   P A   GL  PE+  +       + +N+     +     S+HPPM  ++    +R  EI  M D ++E LEPL
Sbjct:  256 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERVRRLLDLVRRRERAKRLQLDFLDEIRRQAEHELTNRGPNAVVRKPVIPVDEARERHKXXXXXXXXHRDGENGSLADGMGTSGDSKTGAEAKTGKAGTA---VEGPQIA--PTFM-EYDTSANFVMEDTTDTDGSPRSGPVYPSYPLSQPR----------------LMAAIFQQPP-KYRCRGRIGRGGRLVMDRIPVPTSRYYGVTETNAPTLKSASLIPTAAVSGLTTPENGVNLPGSEVGIAANHGAVLVQD---LSVHPPMNKINQVTSKRLDEIYGMSDSEDEFLEPL 557
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: A0A833TDC4_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TDC4_PHYIN)

HSP 1 Score: 65.5 bits (158), Expect = 5.420e-8
Identity = 101/325 (31.08%), Postives = 132/325 (40.62%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVTTSTGSRERSSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---------GDGAAGAAGEDPLAGTVGGLIPGSNISILPSFMDELKTRASIPVRSVVEP-----ALPVYCSAGAASGRGDGRGXXXXXXXXXXXEWGGVGVEPVYKFRLRGRIGRGGRVIWDRVPVEAAPPARDDGLADPEDAPHFVHSNYV----------------QFPFKPPPAC-----------SLHPPMVNLHA-DERRYREICAMDDEQEEMLEPL 849
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V        R                                           XXXXXXXXXXXX R         G  A+G A  D   G  G ++ G  I+  P+FM E  T A+  +    +      + PVY S   +  R                       +   K+R RGRIGRGGR++ DR+PV   P +R  G+ +  +AP    ++ V                 FP                  S+HP M  ++    +R  EI  M D ++E LEPL
Sbjct:  209 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERVRRLLDLVRRRERAKRLQLDFLDEIRRQAEHELTHRGPNAGVRKPVIPVDEERXXXXXXXXXXXXHREVENGSVTDGASASGDAKSDAKPGKAGAVVEGPQIA--PTFM-EYDTSANFVMEDTTDTDSSPRSGPVYPSYPLSPPR-----------------LMAAIFQQHPKYRCRGRIGRGGRLVMDRIPV---PSSRYYGITE-TNAPTLKSTSLVASAVVLGSATPDHSVANFPGSEVGIAANHGAVLVQELSVHPLMHKMNQMTSKRLDEIYGMSDSEDESLEPL 509
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: A0A2P4X1Y3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X1Y3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.720e-8
Identity = 80/228 (35.09%), Postives = 98/228 (42.98%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVTTSTGSRERSSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--------GDGAAGAAGE---DPLAGTVGGLIPGSNISILPSFMDELKTRASIPVRSVVEPALPVYCSAGAASGRGDGRGXXXXXXXXXXXEWGGVGVEPVYKFRLRGRIGRGGRVIWDRVPVEAA 651
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V        R                                             XXXXXXXXXX R        GD A GA  +   D   G  G  + G  I+  P+FM E  T A+     V+E       S  A SG                     +  +P  K+R RGRIGRGGR++ DR+PV ++
Sbjct:  229 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERVKRLLDLVRRRERTKRLQLDFLDEIRRQAEHELTNRGPNAIVRKPIIPVDEERDRXXXXXXXXXXHRDSENGSLSGDSALGAGSDSRTDGKHGKAGAAVEGPQIA--PTFM-EYDTSANF----VMEDTTDTDGSPRALSGP-----VYPSYPLSPPKLMAAIFQQPP-KYRCRGRIGRGGRLVMDRIPVPSS 443
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: F0YRC6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRC6_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.920e-7
Identity = 29/34 (85.29%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFE 102
            VFRPREKERYKLRKHRKND+D+FRKLQQ+++DFE
Sbjct:  183 VFRPREKERYKLRKHRKNDVDAFRKLQQLRRDFE 216
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: M4B3V3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3V3_HYAAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.140e-7
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 108
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  165 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 200
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: D0NYV5_PHYIT (Enhancer of polycomb-like protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0NYV5_PHYIT)

HSP 1 Score: 62.4 bits (150), Expect = 5.220e-7
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 108
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  229 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 264
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BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: A0A225X147_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X147_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.380e-7
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 108
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  229 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 264
[Close]
BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Match: G4YJM1_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YJM1_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 5.390e-7
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 VFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 108
            VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  230 VFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15792.3360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB0_ECTSI6.310e-8474.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT95_9STRA5.520e-1435.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0W8D8R8_PHYNI1.340e-930.18Hematopoietic prostaglandin D synthase n=1 Tax=Phy... [more]
A0A833TDC4_PHYIN5.420e-831.08Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A2P4X1Y3_9STRA8.720e-835.09Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
F0YRC6_AURAN3.920e-785.29Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
M4B3V3_HYAAE5.140e-783.33Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
D0NYV5_PHYIT5.220e-783.33Enhancer of polycomb-like protein n=13 Tax=Phytoph... [more]
A0A225X147_9STRA5.380e-783.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4YJM1_PHYSP5.390e-783.33Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15792contigH-paniculata_contig15792:116..4377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue2.8e-52
Seed eggNOG ortholog2880.D8LLB0
Preferred nameEPC1
KEGG koko:K11322
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.internal peptidyl-lysine acetylation
EggNOG OGsKOG2261@1,KOG2261@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size1076
Cds size600
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.011802-UTR-H-paniculata_contig15792:115..1891622929260.011802-UTR-H-paniculata_contig15792:115..189Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15792 116..189 -
1691480791.2714198-UTR-H-paniculata_contig15792:115..1891691480791.2714198-UTR-H-paniculata_contig15792:115..189Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15792 116..189 -
1622929260.0912066-UTR-H-paniculata_contig15792:2656..29511622929260.0912066-UTR-H-paniculata_contig15792:2656..2951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15792 2657..2951 -
1691480791.3152363-UTR-H-paniculata_contig15792:2656..29511691480791.3152363-UTR-H-paniculata_contig15792:2656..2951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15792 2657..2951 -
1622929260.1025686-UTR-H-paniculata_contig15792:4270..43771622929260.1025686-UTR-H-paniculata_contig15792:4270..4377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15792 4271..4377 -
1691480791.3244224-UTR-H-paniculata_contig15792:4270..43771691480791.3244224-UTR-H-paniculata_contig15792:4270..4377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15792 4271..4377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929260.0253007-CDS-H-paniculata_contig15792:189..4111622929260.0253007-CDS-H-paniculata_contig15792:189..411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 190..411 -
1691480791.2814374-CDS-H-paniculata_contig15792:189..4111691480791.2814374-CDS-H-paniculata_contig15792:189..411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 190..411 -
1622929260.0423765-CDS-H-paniculata_contig15792:1813..20031622929260.0423765-CDS-H-paniculata_contig15792:1813..2003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 1814..2003 -
1691480791.2891765-CDS-H-paniculata_contig15792:1813..20031691480791.2891765-CDS-H-paniculata_contig15792:1813..2003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 1814..2003 -
1622929260.0569715-CDS-H-paniculata_contig15792:2408..25241622929260.0569715-CDS-H-paniculata_contig15792:2408..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 2409..2524 -
1691480791.2975626-CDS-H-paniculata_contig15792:2408..25241691480791.2975626-CDS-H-paniculata_contig15792:2408..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 2409..2524 -
1622929260.0736854-CDS-H-paniculata_contig15792:2584..26561622929260.0736854-CDS-H-paniculata_contig15792:2584..2656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 2585..2656 -
1691480791.3063457-CDS-H-paniculata_contig15792:2584..26561691480791.3063457-CDS-H-paniculata_contig15792:2584..2656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15792 2585..2656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15792.3360.1prot_H-paniculata_contig15792.3360.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15792 190..2656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15792.3360.1

>prot_H-paniculata_contig15792.3360.1 ID=prot_H-paniculata_contig15792.3360.1|Name=mRNA_H-paniculata_contig15792.3360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
MDELKTRASIPVRSVVEPALPVYCSAGAASGRGDGRGGRSGGGGGRKGEW
GGVGVEPVYKFRLRGRIGRGGRVIWDRVPVEAAPPARDDGLADPEDAPHF
VHSNYVQFPFKPPPACSLHPPMVNLHADERRYREICAMDDEQEEMLEPLG
LGLTGGDSSSSGGSNSNANANANSDAMSAGSGGGRVSGSAPKVKYAIEV*
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mRNA from alignment at H-paniculata_contig15792:116..4377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15792.3360.1 ID=mRNA_H-paniculata_contig15792.3360.1|Name=mRNA_H-paniculata_contig15792.3360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4262bp|location=Sequence derived from alignment at H-paniculata_contig15792:116..4377- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTTCGTCCTCGAGAGAAGGAGCGATACAAGCTGCGAAAACACAGAAA
GAACGACCTGGATAGTTTCCGCAAGCTACAGCAAGTCAAGAAAGACTTCG
AAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTCCAC
GTTTATCGGCTAGGATCCGTCACGGCGCTTGTGTTTGTCGTGATTTGTTT
GTTTTATGTTATCATGTGCTTTGTACTGTGTTTGTGTTTGTGTTTGTGTT
TGTGTTTTTGTCAAAAATGACGCACATATGTTGCTTCATCTTTGGTAAGG
TGGGGCAGAGACCATGATCATCTCGACTGTCAAGAGAACAAGACGGGTCC
CTGTGATTTTTGTTTTGAAACCTAAAGCTTTGATCGCGAGGGGCTTGGTT
TGCGTCAATCTCAAAAGCAAATTAGGATGCTTGCTTGCTCTGTGAAGTTG
ACCGTTGACATATGCGAATGCTCCTTCTAAGAAGATCCCAAATGTATCGC
CTTCTGTCCCCCCACCCCCCCCAATGCCCCGAAGAGTGTCGGGGACGTAA
GATATGTGTGCCTCAAGATTACTTCGGTAGGGTTCGAGGTTTCGTGTGGG
TGCCTGATTCCCCCCCCGCATCCCCGCACCTTCGTACCCCACCTCACCAA
CCTCACCCACCACAACGAAAAATGGCCTTTTCGTTTTTTTGCAATCTGCG
CGGCTGAAGCTGCTGAACATCACCAGGATGATCCAGAAGAGGGAAGCGAT
GAAGCGAGAGCAGCTGTTGGTCCAACAGGAGATCTTCATGCAGCAGCACT
GGGATTTGACCGACACTACCGGTGAAGCCCGACCGCTCAACATCAAGCCG
GGGACTTACAGGGCGAGGCCCCGGCAACCGGCGGCCGCGGCCGCGGCGGC
TGCTTCGGCTGCAGGTGGGGCGGTCGGCGCCGCTGGCAGTAGAGGGGGAG
CGACACCCGCGGTTTCGCAGGTGAGAATAGAGCAGGGTTGTTACTTGGGG
TGTTTGATGGTATGGAGTTGAAACGATCCCACACTTGAAGGCGGGGGGCG
GGAGGAAGGGCGTAGGGGCGGGAGCGTATGTAAGTTATGATAATCGTGAA
AATTCCCGCTCGTTAGTTGCCCATGGAGCCTTCACCTACTGTTATGCCTT
TGTATGCTAGCCATACTTTCGAAACGCTTATCTTCCTCCTGCTCCCCCCC
TCCTCTCTCCCCCCGCCCCCATTGCCCAACCATCACGAAACAAACACACA
AATGCATGAACAATCGAAACCCTTCTCTCATCATAATAGCCGTTCGAGCG
GCTGCGAGATAGCAATAGTAGCGGCAACACCGCCGTCAACACAGCCGCCA
ACACAGCCGCCGCCATTACCGCTACATCTGCAACCCCCGTCCCGGCCGCC
GCAGCCGCCACCAACACCGCCAACAGCACTACTTCCACCGGTAGTAGAGA
ACGATCATCCACTCGAAAGAAAAAAACACGAAAAGACAGAACCTCCAGCG
GCTCGAGGGAATCGGCCGCCGATGGCGCAGGAGCGGTCGGTGGGGGCGGC
GGTCGAGCAGGCGCAGGAGCGGGCGGTGACGGCGGCGCAGCGGCGGAAGG
CGCGGCGGAGGACGACGAAGAGCGGGGCGACGGCGCGGCAGGGGCCGCGG
GGGAAGATCCGCTTGCCGGGACCGTCGGCGGGTTGATCCCGGGATCTAAC
ATTTCTATCTTGCCGTCCTTCATGGATGAGCTGAAGACGCGAGCGAGCAT
TCCGGTGCGGAGCGTGGTGGAACCAGCGCTTCCGGTGTACTGCGTCCGCG
GCGGGGGTTACAGGCGGCGTGGTGGCGGCGGCGGAAGTAGCAGCAGCAGC
AAGTCTGCCGGGGCGGCGAGCGGGAGGGGGGATGGAAGAGGTGGCAGAAG
TGGAGGCGGGGGCGGGAGGAAGGGGGAGTGGGGCGGGGTTGGGGTGGAAC
CGGTGTATAAATTCAGACTGTGAGTTTGAGTTTGATTGTGGTTGTTGTTG
GTGGTGTCGATTTTGTTGTCGTTGTTGTTGGTGGTGTCGGTTTTGTTGGT
GGTGCTGTGTTGGTGTTGTTGTTTTGCCTTTTGGGTGTGTGCGCTTGCCT
TTTTTTTTTGCGTTATATTGTATTCTGTTGTGTTGTGATACGTTGTGTTG
TGATACGTTGTGTTGTGTTATGTTGTGTTGTGTACTCTGTACTGTGGCGA
ACTTGTACCCGACGATGTGCATTCTCTAGATGCTGGAGCAAAAAGCATTC
TGGATTCTTCATGTACTAATTCCAAGCTGCAAGCGTGGTCCTGCTGGATG
TACTTTCTGACGCTATCCCCCGCCCTCGGCGCCATCCGATTCCTCTACGC
TCATGCGCTCACCGCATGCATCAGACGAGGCCGTATTGGCCGGGGAGGGC
GAGTAATATGGGACCGTGTTCCCGTGGAGGCGGCGCCACCTGCACGAGAC
GATGGGCTAGCAGACCCAGAAGATGCGCCGCACTTTGTCCACAGCAATTA
CGTGCAGTTTCCCTTCAAGCCGCCTCCAGCTTGCAGCCTGCACCCTCCGA
TGGTTAACCTACACGTGAGTCATACAACATGGGTCGACGGTTAACTCGTT
GTTAGCGATTAGCGGGTGCGGTGAGAAGTGCGGTTGGCGGTTAGCTGTAC
CATCGAGTTCGTTTTTTTTCACAGGTGTATTGGAGGTATTTGACTTCCTG
TAGTCCAAACGTTGAAGGCTAGTTGTAGGCTTGAGTTTAACGAAGTGCAG
CAAGCTGTGTTTTGCAAGGATTTCATTGTATGTTTCGGTTCTTGGGTTGG
TGTGTTTGTTGTTGTCCAAATGCTGCCAGCGTCGATAAAACCAACTTTTC
TCAAAGGGAATCCGTCGCTCGTATATTGCTAGTGGGGGGCTTGTTTGGGA
TCAAAGGGACAGTAAGATTTCGATATAGTTCAAACAAAGTTAATAAAGTT
GTGCACAGGGGGTGAGGGGCAGGTCTTCGGGTCTTCGGGTCGCATGTCAG
ATCGAAATCACGACGAGTTTTTTGACGCGACGACGGGGCGTTCCTCGTGT
TGATACTGGATAGAATTTGTGTTGGCTCGGTGCAGGCCGCTCTCAACGAA
GTGAATGTAGCAGTGAATGGGTTTTGGCCTGAGCGCGGACGTTGTCACAA
CGTGGCACGAGAGTCCCTCCTCATTTTGTGGAGTGGCAGTTGTGCTCCCC
AGTATTCGTCGTCCCGCCTATGCTGTCTAGTGTGTGTTTGTTGAACACTT
CTCGCCCTCGTTGTTGTCTTTGTCACCTATGTCACTTGCCGCGCCTCCTC
GCCACAGTCGCCACAGGAGTTCGTCCCCGTCCATTTAGTGGGCTTGTGAA
ATCAGTCACTCGGCAGCATGAAAATATACAAGAATACATGTTTCAGAATC
GTTTTTCCATGTTTGTTGTCGCTGTTGTCGTTGTTGTCCTCCCCACCCCC
TACTTCTTTTTGCTTCCCGTTTTGGCAAAAGTTGTCACCTGGCATAGATA
CATTATATAGTCATAGTATCAAAATTTCAGTCACTAAAATTTCTTTGAAG
CATCGCCGGCCTCTTTATCTAGACGAAGTGCTGCCGTGGATGACACAAAT
GCTGCTCACTCAGTTCGTAAAATACGACCAAAAAATGAAAGTGCTCCAGC
GCCACCCGCGACCCGCCGCCCCTACCCGCTACCCGCCTATTCCTTCACCC
ATCCAACTCCACCCTCTCGACGACGCGTGGTCAATGGTTCAACAACTGCG
GAATGGGCATCATGAGTACCGCCATTTTGTTTTTTACAACTACGTCTCCC
CCCCCCTCCCAGCTACCCACCCACCCACCTATCCCTTCGATGAATCACCA
AAAAATACGTTCACGTACACACAAAACACAGAACGCCAACGCAAAATCCC
GTTTTCTTTCGTGCGTTATTTTACTCACTCATGATACTTTCCCCTTCTCC
CCCTCTCCCTTTGCAGGCGGACGAGCGTCGATACCGCGAGATCTGCGCCA
TGGACGACGAGCAAGAGGAAATGCTAGAGCCTCTTGGGCTGGGCTTGACG
GGGGGTGACTCCTCCTCGTCGGGCGGCTCAAACTCAAATGCAAATGCAAA
TGCAAACTCGGACGCAATGTCGGCCGGATCCGGGGGCGGAAGGGTATCAG
GGTCGGCCCCCAAAGTCAAGTATGCAATAGAGGTGTAGAAACCCGTCCAT
TTCCCACCCACCTCATGATTGCTGCTGGGCAATTGACTACTTTTCATTCA
TTTGTCCGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig15792:116..4377-

>mRNA_H-paniculata_contig15792.3360.1 ID=mRNA_H-paniculata_contig15792.3360.1|Name=mRNA_H-paniculata_contig15792.3360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig15792:116..4377- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGCTGAAGACGCGAGCGAGCATTCCGGTGCGGAGCGTGGTGGA
ACCAGCGCTTCCGGTGTACTGCATGGATGAGCTGAAGACGCGAGCGAGCA
TTCCGGTGCGGAGCGTGGTGGAACCAGCGCTTCCGGTGTACTGCTCTGCC
GGGGCGGCGAGCGGGAGGGGGGATGGAAGAGGTGGCAGAAGTGGAGGCGG
GGGCGGGAGGAAGGGGGAGTGGGGCGGGGTTGGGGTGGAACCGGTGTATA
AATTCAGACTTCTGCCGGGGCGGCGAGCGGGAGGGGGGATGGAAGAGGTG
GCAGAAGTGGAGGCGGGGGCGGGAGGAAGGGGGAGTGGGGCGGGGTTGGG
GTGGAACCGGTGTATAAATTCAGACTACGAGGCCGTATTGGCCGGGGAGG
GCGAGTAATATGGGACCGTGTTCCCGTGGAGGCGGCGCCACCTGCACGAG
ACGATGGGCTAGCAGACCCAGAAGATGCGCCGCACTTTGTCCACAGCAAT
TACGTGCAGTTTCCCTTCAAGCCGCCTCCAGCTTGCAGCCTGCACCCTCC
GATGGTTAACCTACACACGAGGCCGTATTGGCCGGGGAGGGCGAGTAATA
TGGGACCGTGTTCCCGTGGAGGCGGCGCCACCTGCACGAGACGATGGGCT
AGCAGACCCAGAAGATGCGCCGCACTTTGTCCACAGCAATTACGTGCAGT
TTCCCTTCAAGCCGCCTCCAGCTTGCAGCCTGCACCCTCCGATGGTTAAC
CTACACGCGGACGAGCGTCGATACCGCGAGATCTGCGCCATGGACGACGA
GCAAGAGGAAATGCTAGAGCCTCTTGGGCTGGGCTTGACGGGGGGTGACT
CCTCCTCGTCGGGCGGCTCAAACTCAAATGCAAATGCAAATGCAAACTCG
GACGCAATGTCGGCCGGATCCGGGGGCGGAAGGGTATCAGGGTCGGCCCC
CAAAGTCAAGTATGCAATAGAGGTGTAGGCGGACGAGCGTCGATACCGCG
AGATCTGCGCCATGGACGACGAGCAAGAGGAAATGCTAGAGCCTCTTGGG
CTGGGCTTGACGGGGGGTGACTCCTCCTCGTCGGGCGGCTCAAACTCAAA
TGCAAATGCAAATGCAAACTCGGACGCAATGTCGGCCGGATCCGGGGGCG
GAAGGGTATCAGGGTCGGCCCCCAAAGTCAAGTATGCAATAGAGGTGTAG
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