prot_H-paniculata_contig1579.3359.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1579.3359.1
Unique Name	prot_H-paniculata_contig1579.3359.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	309

Homology

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6A2YAJ3_HIBSY (Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YAJ3_HIBSY)

HSP 1 Score: 83.6 bits (205), Expect = 4.730e-14
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGLDHLC------VFGCTACVMLQSQQRRKLDDKAWAGIFLGYDEDSPSYRI 115
            VY L++KSE      +++  V    GL++KRL SD GGEY    FR FCA NGIK E +   T QQ+G+          +FGC + V + S +R KLD K+   +F+GY  D   YR 
Sbjct:  441 VYFLKKKSEVFDTFIKWKAMVENETGLKVKRLRSDNGGEYRDSRFRDFCANNGIKMETTVPITPQQNGVAERMNRTLNELFGCISYVHINSAERSKLDAKSNKCVFVGYGGDEFGYRF 558

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6G0MEU1_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MEU1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.850e-14
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL--------------------------------------DHLCVFGCTACVMLQSQQRRKLDDKAWAGIFLGYDEDSPSYRIVN 117
            VY +++K+E L   K+F+ ++  A G +IKRL SD GGEYTGR F+++ ++  I+ E +  YT QQ+GL                                       +L VFG      +  ++RRKLDDKA+   FLGY++    YR++N
Sbjct:  220 VYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQSIRHEKTVPYTPQQNGLAECMNRSLVEMALCMLYHEGIDKKWWAEAIVYQTKPQLKNLKVFGVLGYGHIPDEKRRKLDDKAFKCRFLGYEDGVKGYRVLN 371

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6A4BLX0_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BLX0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.640e-12
Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL---------------------------------DHLCVFGCTACVMLQSQQRRKLDDKAWAGIFLGYDEDSPSYRIVN 117
            VY +++K+E L   K F+ ++  A G +IKR+ SD GGEYTGR F+++ ++ GI+ E +  YT QQ+GL                                  +L VFG      +  ++R KLD KA+   FLGY++    Y ++N
Sbjct:   55 VYFMKKKAEVLEKFKMFKADMENATGRKIKRIRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAKPQLKNLKVFGALGYGHIPDEKRHKLDAKAFKCRFLGYEDGVKGYSVLN 201

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6A2ZBF8_HIBSY (Paired amphipathic helix protein Sin3-like 3-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZBF8_HIBSY)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-10
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGLDHLCVFGCTACVMLQSQQRRKLDDKAWAGIFLGYDEDSPSYRI 115
            VY L++KSE     ++++  +   +GL++KRL SD GGEY  R FR FCA NGIK E +   T QQ+G+           +     +R ++D K+   +F+GY  D   YR 
Sbjct:  636 VYFLKKKSEVFDTFRKWKAMMENESGLKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTSQQNGVAER--------MNRTLNERARIDAKSNKCVFVGYGGDEFGYRF 739

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.890e-10
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL 72
            VY +++K+E L   K+FE ++  A G +IKRL SD GGEYTGR F+++ ++ GI+ E +  YT QQ+GL
Sbjct:   79 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGL 147

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.980e-10
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL 72
            VY +++K+E L   K F+ ++  A G +IKRL SD GGEYTGR F+++ ++ GI+ E +  YT QQ+GL
Sbjct:   55 VYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGL 123

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A2P4Y365_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y365_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.650e-10
Identity = 46/147 (31.29%), Postives = 66/147 (44.90%), Query Frame = 0

Query:   11 SEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL----------------------------------------DHLCVFGCTACVMLQSQQRRKLDDKAWAGIFLGYDEDSPSYRIVN 117
            S+ L   K F+  +  A G RIKRL SD GGEYTGR F+ +    GIK E +  YT +Q+GL                                        ++L VFG      + +++RRKLD KA+   F+GY++    Y ++N
Sbjct:   42 SDVLSKFKIFKAALENATGQRIKRLRSDNGGEYTGRQFKAYLNHCGIKHEKTVPYTPRQNGLAERMNRSLVEMARSWIINRIPNSVTIKTPYDIVYKTKQLLENLKVFGALGYAHIPNEKRRKLDAKAFKCRFMGYEDGVKGYCVMN 188

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6G0NAT6_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NAT6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.010e-10
Identity = 46/154 (29.87%), Postives = 74/154 (48.05%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYT----------------------------------------RQQSGLDHLCVFGCTACVMLQSQQRRKLDDKAWAGIFLGYDEDSPSYRIVN 117
            VY +++K+E L   K+F+ ++  A G +IKRL SD GGEYTGR F+++ ++ GI+ E + A                                          +++  L +L VFG      +  ++RRKLD KA+   FLGY++    YR++N
Sbjct:   79 VYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTMARCMLYHEGIDKKWWAEAVNTSAWIINRIPNTATVKTPYEIVYQKKPQLKNLKVFGALGYGHVPDEKRRKLDAKAFKCRFLGYEDGVKGYRVLN 232

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.630e-10
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL 72
            VY +++K+E L   K+FE ++  A G +IKRL SD GGEYTGR F+++ ++ GI+ E +  YT QQ+GL
Sbjct:   55 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGL 123

[Close]

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Match: A0A6A4B1T5_9STRA (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4B1T5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.730e-10
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 0

Query:    4 VYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQFCAENGIKQEFSAAYTRQQSGL 72
            VY +++K+E L   K+F+ ++  A G +IKRL SD GGEYTGR F+++ ++ GI+ E +  YT QQ+GL
Sbjct:   28 VYFMKKKAEVLDKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGL 96

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1579.3359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6A2YAJ3_HIBSY	4.730e-14	40.68	Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacu...	[more]
A0A6G0MEU1_9STRA	8.850e-14	32.89	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6A4BLX0_9STRA	1.640e-12	31.97	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A2ZBF8_HIBSY	1.600e-10	36.61	Paired amphipathic helix protein Sin3-like 3-like ...	[more]
A0A6G0JTE1_9STRA	1.890e-10	47.83	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A3LQ24_9STRA	1.980e-10	46.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A2P4Y365_9STRA	2.650e-10	31.29	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6G0NAT6_9STRA	6.010e-10	29.87	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6A4CGC1_9STRA	7.630e-10	47.83	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A4B1T5_9STRA	7.730e-10	46.38	Integrase catalytic domain-containing protein n=4 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..73 e-value: 8.9E-9 score: 36.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 6..71 e-value: 1.9E-9 score: 37.7
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 18..71 coord: 72..305
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 18..71 coord: 72..305
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..72

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1579	contig	H-paniculata_contig1579:21817..23393 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1579.3359.1	mRNA_H-paniculata_contig1579.3359.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1579 20776..23576 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1579.3359.1 ID=prot_H-paniculata_contig1579.3359.1|Name=mRNA_H-paniculata_contig1579.3359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MRKVYTLRQKSEALWALKQFEREVARANGLRIKRLWSDQGGEYTGRPFRQ
FCAENGIKQEFSAAYTRQQSGLDHLCVFGCTACVMLQSQQRRKLDDKAWA
GIFLGYDEDSPSYRIVNPFSVLSDDDDDASNGDSTVKDAEPAVEDAPSAG
AVAPGSLGNITTQSGTEAQRPRDRSPTRTQARARENREEDPGVTARVAKV
KGTGNLTEAVLKGEPKSVAESLKGPEVEKWRVSMEEEWGALVKMEHGKAK
TRRGYRQGGRRLVLNEFSTRLVAQGFSQVGGEVFFETSVFGLAAEHDFEL
EGMDIDAA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf