mRNA_H-paniculata_contig1579.3358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1579.3358.1
Unique NamemRNA_H-paniculata_contig1579.3358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 247 bits (631), Expect = 1.710e-75
Identity = 134/353 (37.96%), Postives = 209/353 (59.21%), Query Frame = 1
Query:   58 VRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGR-HEKVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMK-ISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            V +L KS YGLKQS   WN+ LD  L  IG   + +D C+Y+  +DG     +VA++VDD+++ G+  EK+   K S ++RF+ K +G L  +L ++V +   +  + I Q +YT  ++K+YG + C+ V TP++   K +SA +  +  N  EY+S VGS+++ S  TRPDI +AV+  A+   +   E ++A KRIFRYL    + G+ +   +N   + GF DADWA D+ DRKST+GY  + NG A+ W  +KQ  V  S+ EAEYVA   A +E +++R LL  +        T + DN+SAI +SK    H R+KHI +++  +R+ + +  L + Y  T   LAD+
Sbjct:   13 VCKLNKSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQ--EDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADL 360          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 250 bits (639), Expect = 9.810e-74
Identity = 137/372 (36.83%), Postives = 218/372 (58.60%), Query Frame = 1
Query:    1 ELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGR-HEKVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMK-ISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            E+++K P  F    ++     +L KSLYGLKQS   WN+ LD  L  IG   + +D C+Y+  +DG     +VA++VDD+++ G+  EK+   K S ++RF+ K +G L  +L ++V +   +  + I Q +YT  ++K+YG + C+ V TP++   K +SA +  +  N  E++S VGS+++ S  TRPDI +AV+  A+   +P  E ++A KRIFRYL    + G+ +   +N   + GF DADWA D+ DRKST+GY  + NG A+ W  +KQ  V  S+  AEYVA   A +E +++R LL  +        T + DN+SAI +SK    H R+KHI +++  +R+ + +  L + Y  T   LAD+
Sbjct:  270 EVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQ--EDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADL 635          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 244 bits (622), Expect = 1.420e-73
Identity = 130/359 (36.21%), Postives = 208/359 (57.94%), Query Frame = 1
Query:   58 VRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHEKV-DGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKISAP------DRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTT-FFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            V +L++SLYGLKQS   WN T+D F++++G     +D C+Y+ RD  G+  + VA+YVDDLV+   ++++ +  KH+ S+RF    LG L   L +E++  R +  +T+ Q  + + +L ++G  + + V TP +  +K++            +  +  YRS+VG++M+  + TRPD+A AV   ++   DP    + A KR+ RYL      G+ F  + +  G+ G+ DADWA D+E R+ST+GY    NGG I W  +KQ+ V  SS EAEY+A  EA +E ++L+  L  +G          + DN+ +I L+K    H RTKHI +R+  +RE + +G + L YV T D LAD+
Sbjct:   33 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 388          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 256 bits (653), Expect = 8.950e-73
Identity = 140/372 (37.63%), Postives = 220/372 (59.14%), Query Frame = 1
Query:    1 ELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGR-HEKVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMK-ISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            E+++K P  F    ++   V +L KSLYGLKQS   WN+ LD  L  IG   + +D C+Y+  +DG     +VA++VDD+++ G+  EK+   K S ++RF+ K +G L  +L ++V +   +  + I Q +YT  ++K+YG + C+ V TP++   K +SA +  +  N  EY+S VGS+++ S  TRPDI +AV+  A+   +P  E ++A KRIFRYL    + G+ +   +N   + GF DADWA D+ DRKST+GY  + NG A+ W  +KQ  V  S+ EAEYVA   A +E +++R LL  +        T + DN+SAI +SK    H R+KHI +++  +R+ + +  L + Y  T   LAD+
Sbjct:  884 EVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQ--EDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADL 1249          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A2P6SBD8_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SBD8_ROSCH)

HSP 1 Score: 247 bits (631), Expect = 3.790e-72
Identity = 149/373 (39.95%), Postives = 216/373 (57.91%), Query Frame = 1
Query:    1 ELFVKLPPEF--SPFSRDIPFVRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHE-KVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            E+++  PP +    F      V RL+K+LYGLKQ+   W + +D F V+ G      +  LY    D G   L++ +YVDDL+ T  +   +D FK S  + F    LG +   L IE+ +  ++  I ISQ  Y  EVL+R+    C  V TP E  +K++    GK  N+T Y+ +VGS+M+ +  TRPDI +AV   +R ME P  +   A KRI RYL   ADLGI F  K     L GF D+D+A D++DRKST+G+V     GAI W  +KQQ+VT S+ EAE+VAA  +  + I+LR +LG +    +  T  + DN S+I+LSK S  H R+KHI VR+  +R+ ++EG + L Y  ++DQ+AD+
Sbjct:  299 EVYINQPPGYVKQVFENQ---VYRLKKALYGLKQAPRAWYSHIDAFFVKEGFCKCPYEHTLYTKLGDDGRI-LVMCLYVDDLIYTSNNSLMLDAFKKSMMEEFDMTDLGLMRYFLGIEILQ--SSAGIFISQKKYALEVLERFKMGNCNSVCTPTEVGLKLTKNGSGKRVNATLYKQIVGSLMYLTT-TRPDIMFAVSMVSRYMEKPMEDHLVAVKRILRYLKGTADLGI-FYKKFQSSNLCGFTDSDYAGDMDDRKSTSGFVFMMGSGAISWSAKKQQIVTLSTTEAEFVAAASSSCQAIWLRRMLGVLQNQQQSPTIIYCDNSSSIKLSKNSVLHGRSKHIDVRYHFLRDLMKEGAIELVYCPSNDQVADI 663          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A1J6HVV2_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6HVV2_NICAT)

HSP 1 Score: 239 bits (610), Expect = 3.930e-72
Identity = 138/352 (39.20%), Postives = 204/352 (57.95%), Query Frame = 1
Query:   58 VRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHEKV-DGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            V +L+K+LYGLKQ+   WN+ +D ++   G      +  LY+     G+  LLV +YVDDL+ TG + K+ + FK + ++ F    +G +S  L I+V++ +  D I ISQG Y +E+LK++  D C  V TP+E  +KIS    G++ N T ++S+VGS+ + +  TRPDI Y V   +R ME P        KRI RY+    D GI +    +     G+ D+DWA D++DRKSTTG+V      A  W  +KQ +VT S+ EAEYVAA       I+LR+LL  +    +  T  F DN+SAI L+K    H R+KHI  R+  IR+ I   V+ L +V++ DQ+AD+
Sbjct:   33 VMKLKKALYGLKQAPRAWNSRIDKYIQANGFSKCPHEHTLYVKIAKNGDI-LLVCLYVDDLIFTGNNPKMFEEFKEAMAREFEMTDIGLMSYYLGIQVQQRK--DGIFISQGEYAKEILKKFEMDNCNPVSTPVECGVKISKHGDGENVNPTFFKSLVGSLRYLTC-TRPDILYGVGLVSRFMEAPTTSHLKVAKRILRYIKDTLDYGILYSSSKDSK-FVGYCDSDWAGDIDDRKSTTGFVFFLGNSAFTWNSKKQPIVTLSTCEAEYVAACSCVCHAIWLRSLLEELHQPQKDATKIFVDNKSAIELAKNPVFHERSKHIDTRYHFIRDCISNKVVELEHVKSQDQIADI 379          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 246 bits (629), Expect = 5.940e-72
Identity = 132/353 (37.39%), Postives = 209/353 (59.21%), Query Frame = 1
Query:   58 VRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHE-KVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKIS-APDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            V RLR+S+YGLKQS   WN+ LD  L  +G   +T D C+Y+ +++GGE   ++AVYVDD+++ G+++ K++  K + +++F+ K +G L   L ++V     +  I I Q +YT+ VL+R+G +  +   TP+    K+  A D  +  +   Y+  VG +++ S +TRPDIAYAV   AR   DP  E + A KRI RYL+   D+G+ + G        G+ DADWA D++DRKST+GYV + +  AI W  +KQ  V  S+ EAEY+A   A +E ++L+ LL  +     G      DN++AI ++K +  H R KHI +++  IRE +    + L Y  T++ +AD+
Sbjct:  124 VCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADI 474          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: UPI001E1CA5CE (uncharacterized protein LOC120969904 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA5CE)

HSP 1 Score: 252 bits (644), Expect = 2.090e-71
Identity = 152/371 (40.97%), Postives = 219/371 (59.03%), Query Frame = 1
Query:    1 ELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHE-KVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            E++V  PP +     +   V RLRK+LYGL+Q+   WN  LD  L  +G D   ++  +Y  R   G+  LLV VYVDDLVITG  + ++D FKH  +  FR   LG LS  L IEVR+GR  D IT+ Q +Y +++++R G +EC     P+E ++K+S   + +  +STEYRS++G + +  + TRPDI++AV   +R ME P  + +   KR+ RY++   D G  +        L G+ DAD A D++DR+STTG +    G  + W  +KQ++V  SS EAEYVAA  A  + I+L  L+G +            DN+SAI LSK    H R+KHI +R+  IRE + EG + +NYV T+DQLADV
Sbjct:  981 EVYVVQPPGYVTPGEEGK-VLRLRKALYGLRQAPRAWNAKLDESLRSLGFDRCPSEHAVY--RRGEGDKLLLVGVYVDDLVITGADKTEIDAFKHQMTTLFRMSDLGELSYYLGIEVRQGR--DRITLCQAAYAKKLVERAGLEECNPGNLPMEARLKLSRDSKERPVDSTEYRSIIGGLRYL-VHTRPDISFAVGYLSRFMEAPASDHYVVVKRLLRYVAGTLDYGCAYIRGKGTPELLGYSDADHAGDIDDRRSTTGVLYFLGGSPVSWQSQKQRVVALSSCEAEYVAATTAACQGIWLARLIGEMLNTDVRPPRLLVDNKSAISLSKNPVFHDRSKHIEIRYHFIRECVEEGRIDINYVCTNDQLADV 1345          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A182GC29_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GC29_AEDAL)

HSP 1 Score: 239 bits (610), Expect = 4.050e-71
Identity = 140/371 (37.74%), Postives = 202/371 (54.45%), Query Frame = 1
Query:    1 ELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHE-KVDGFKHSTSQRFRTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            E+F++ PP F+   R+   V RL+KS+YGLKQS   WN  L   LVE+G + S TD CLY     G    LLV  YVDD++I    E ++D       + F    LG  S  L +++     +   ++S G Y   V  R+G  E +   TP+E     S     K  +  EYRS+VG++++ S+  RPD+A +V    R++  P   D+ A KR+ RYL    +  +++G    G  L G+ DADWA D   RKSTTG+V    GGA+ W  R+Q  VT SS+E+EYVA  EA +E+I+LR+LL  +G    G  T   DN+S I+  K      R+KHI V+   +++   +G + L Y  T+D +ADV
Sbjct:  106 EIFMRQPPGFAVKGRE-GMVCRLKKSIYGLKQSARCWNQRLHSVLVEMGFEQSATDPCLYTKVVSGKRVYLLV--YVDDIMIDCEDEAQIDSVYEQLKRYFEVTNLGEPSDFLGLKIEC--KDRKYSVSVGGYIDRVADRFGLREAKKAKTPMEEGFASSEDKSPKLSDDNEYRSLVGALLYISVCARPDVAASVAILGRKVSSPTEADWVAAKRVVRYLKATKEWKLSYG--DAGGQLVGYSDADWAGDAGTRKSTTGFVFNYAGGAVSWVSRRQSCVTLSSMESEYVALSEASQELIWLRSLLADMGEQVEGPVTVMEDNQSCIQFVKSDRKSRRSKHIEVKQHFVKQLCEDGSMKLQYCPTEDMVADV 469          
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 236 bits (601), Expect = 4.180e-71
Identity = 134/353 (37.96%), Postives = 208/353 (58.92%), Query Frame = 1
Query:   58 VRRLRKSLYGLKQSGCNWNNTLDYFLVEIGPDSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRH-EKVDGFKHSTSQRFRTKYLGPLSRVLEIEV-RRGRTNDNITISQGSYTREVLKRYGFDECRGVPTPLEGKMKISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARRMEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYLRALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREWIREGVLALNYVQTDDQLADV 1110
            V +LRK+LYG KQ+   W + ++ + ++   +    +  L++ ++  G++ L+V++YVDDL+ TG     ++ FK S  + F    LG +   L +EV + GR    I I+Q  Y  E LK+YG + C  V  P+    K+S    G + + T ++ +VGS+ + +  TRPD+ Y+V+  +R ME+P  +   A KRI RY+      GI +  +  G  L GFVD+D+A DV+DRKST+GYV    GGA+ W  +KQ +VT S+ EAE+VAA     + ++LR +LG IG+     TT F DN S I+LSK    H R+KHI VR+  +R+ + E V+ L +  T+DQL+D+
Sbjct:    7 VYKLRKALYGSKQAPRAWYSRIEGYFMKEKFEKCYYEHTLFVKKE--GDSILIVSLYVDDLIYTGNSLTMLEEFKQSMMKEFAMTDLGKMKFFLGVEVIQDGR---GIFINQQKYAEETLKKYGMEGCNAVKNPIVPGNKLSRAGGGDAADPTMFKQLVGSLRYLTA-TRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDI 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1579.3358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9M6E1_PARCT1.710e-7537.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT9.810e-7436.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB98_PHYRM1.420e-7336.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT8.950e-7337.63Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6SBD8_ROSCH3.790e-7239.95Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A1J6HVV2_NICAT3.930e-7239.20Retrovirus-related pol polyprotein from transposon... [more]
A0A7D9KES8_PARCT5.940e-7237.39Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001E1CA5CE2.090e-7140.97uncharacterized protein LOC120969904 n=1 Tax=Aegil... [more]
A0A182GC29_AEDAL4.050e-7137.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JBX5_9BRAS4.180e-7137.96Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1579contigH-paniculata_contig1579:20773..21963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score245.4
Seed ortholog evalue4.3e-62
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1113
Cds size1113
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.8348627-CDS-H-paniculata_contig1579:20772..214001622929259.8348627-CDS-H-paniculata_contig1579:20772..21400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1579 20773..21400 -
1691480791.1837006-CDS-H-paniculata_contig1579:20772..214001691480791.1837006-CDS-H-paniculata_contig1579:20772..21400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1579 20773..21400 -
1622929259.8501544-CDS-H-paniculata_contig1579:21478..219631622929259.8501544-CDS-H-paniculata_contig1579:21478..21963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1579 21479..21963 -
1691480791.1928234-CDS-H-paniculata_contig1579:21478..219631691480791.1928234-CDS-H-paniculata_contig1579:21478..21963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1579 21479..21963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1579.3358.1prot_H-paniculata_contig1579.3358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1579 20773..21963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1579.3358.1

>prot_H-paniculata_contig1579.3358.1 ID=prot_H-paniculata_contig1579.3358.1|Name=mRNA_H-paniculata_contig1579.3358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=371bp
ELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGCNWNNTLDYFLVEIGP
DSSTTDSCLYISRDDGGETNLLVAVYVDDLVITGRHEKVDGFKHSTSQRF
RTKYLGPLSRVLEIEVRRGRTNDNITISQGSYTREVLKRYGFDECRGVPT
PLEGKMKISAPDRGKSGNSTEYRSMVGSIMHASIRTRPDIAYAVHQAARR
MEDPFREDFSACKRIFRYLSTVADLGITFGGKSNGHGLEGFVDADWAEDV
EDRKSTTGYVIKRNGGAIRWCCRKQQLVTWSSIEAEYVAAREAGKEVIYL
RALLGSIGFYCRGNTTFFRDNESAIRLSKGSGAHCRTKHIGVRWQGIREW
IREGVLALNYVQTDDQLADV*
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mRNA from alignment at H-paniculata_contig1579:20773..21963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1579.3358.1 ID=mRNA_H-paniculata_contig1579.3358.1|Name=mRNA_H-paniculata_contig1579.3358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-paniculata_contig1579:20773..21963- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCCTTCTCCCGAGACAT ACCGTTTGTGCGCCGCCTACGTAAAAGCCTGTACGGCCTCAAACAGAGCG GCTGTAACTGGAATAACACTCTTGACTATTTTCTTGTTGAAATAGGACCC GACAGTTCCACTACCGACTCATGCTTGTACATTTCTCGCGACGATGGGGG AGAGACAAACCTTCTGGTGGCCGTCTATGTGGACGACCTGGTCATTACTG GCCGTCATGAGAAAGTAGACGGGTTCAAGCATAGCACAAGTCAGCGTTTT AGGACGAAGTACTTGGGCCCTCTCTCGCGCGTGTTGGAAATAGAAGTACG ACGTGGTCGCACTAATGATAACATAACCATCTCGCAGGGTAGCTACACCC GCGAGGTTCTAAAAAGATACGGTTTTGACGAGTGCCGAGGGGTACCCACT CCTTTAGAGGGAAAAATGAAGATTTCGGCACCCGAGTCAGCCGACAAGCC CTCCGAACAGAGGTCACTTGGGGCTGTACTGTCAGACATAGACGCAGGAG TACAAGAAAGCAGCAGAGGGAAAAGTGGCAATTCAACTGAATACAGAAGC ATGGTAGGATCAATCATGCACGCCTCGATAAGAACTAGACCCGATATAGC ATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCATTTCGGGAAG ACTTCAGTGCATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGGCTGAC CTCGGCATTACATTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATT CGTTGATGCCGATTGGGCGGAAGATGTTGAGGACCGAAAGTCCACAACAG GATACGTAATCAAACGAAATGGTGGTGCGATACGTTGGTGCTGTAGGAAG CAACAGTTAGTCACGTGGTCCAGTATAGAGGCAGAGTACGTTGCTGCACG AGAAGCGGGAAAGGAGGTAATATATCTTAGGGCGTTACTAGGATCGATAG GTTTCTACTGCAGGGGGAACACGACATTTTTTAGGGACAATGAATCAGCT ATTAGGCTCAGTAAGGGATCTGGTGCACACTGCAGAACAAAACACATCGG AGTGCGCTGGCAAGGTATTCGAGAGTGGATTCGAGAAGGAGTATTGGCGT TGAATTACGTGCAGACCGACGACCAACTTGCTGACGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1579:20773..21963-

>mRNA_H-paniculata_contig1579.3358.1 ID=mRNA_H-paniculata_contig1579.3358.1|Name=mRNA_H-paniculata_contig1579.3358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2226bp|location=Sequence derived from alignment at H-paniculata_contig1579:20773..21963- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCCTTCTCCCGAGACAT
ACCGTTTGTGCGCCGCCTACGTAAAAGCCTGTACGGCCTCAAACAGAGCG
GCTGTAACTGGAATAACACTCTTGACTATTTTCTTGTTGAAATAGGACCC
GACAGTTCCACTACCGACTCATGCTTGTACATTTCTCGCGACGATGGGGG
AGAGACAAACCTTCTGGTGGCCGTCTATGTGGACGACCTGGTCATTACTG
GCCGTCATGAGAAAGTAGACGGGTTCAAGCATAGCACAAGTCAGCGTTTT
AGGACGAAGTACTTGGGCCCTCTCTCGCGCGTGTTGGAAATAGAAGTACG
ACGTGGTCGCACTAATGATAACATAACCATCTCGCAGGGTAGCTACACCC
GCGAGGTTCTAAAAAGATACGGTTTTGACGAGTGCCGAGGGGTACCCACT
CCTTTAGAGGGAAAAATGAAGATTTCGGCACCCGAGAGCTGTTTGTTAAG
CTACCCCCCGAGTTTTCCCCCTTCTCCCGAGACATACCGTTTGTGCGCCG
CCTACGTAAAAGCCTGTACGGCCTCAAACAGAGCGGCTGTAACTGGAATA
ACACTCTTGACTATTTTCTTGTTGAAATAGGACCCGACAGTTCCACTACC
GACTCATGCTTGTACATTTCTCGCGACGATGGGGGAGAGACAAACCTTCT
GGTGGCCGTCTATGTGGACGACCTGGTCATTACTGGCCGTCATGAGAAAG
TAGACGGGTTCAAGCATAGCACAAGTCAGCGTTTTAGGACGAAGTACTTG
GGCCCTCTCTCGCGCGTGTTGGAAATAGAAGTACGACGTGGTCGCACTAA
TGATAACATAACCATCTCGCAGGGTAGCTACACCCGCGAGGTTCTAAAAA
GATACGGTTTTGACGAGTGCCGAGGGGTACCCACTCCTTTAGAGGGAAAA
ATGAAGATTTCGGCACCCGACAGAGGGAAAAGTGGCAATTCAACTGAATA
CAGAAGCATGGTAGGATCAATCATGCACGCCTCGATAAGAACTAGACCCG
ATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCATTT
CGGGAAGACTTCAGTGCATGCAAGCGCATTTTTCGTTATCTCAGTACTGT
GGCTGACCTCGGCATTACATTCGGCGGTAAGAGTAATGGTCACGGTCTGG
AAGGATTCGTTGATGCCGATTGGGCGGAAGATGTTGAGGACCGAAAGTCC
ACAACAGGATACGTAATCAAACGAAATGGTGGTGCGATACGTTGGTGCTG
TAGGAAGCAACAGTTAGTCACGTGGTCCAGTATAGAGGCAGAGTACGTTG
CTGCACGAGAAGCGGGAAAGGAGGTAATATATCTTAGGGCGTTACTAGGA
TCGATAGGTTTCTACTGCAGGGGGAACACGACATTTTTTAGGGACAATGA
ATCAGCTATTAGGCTCAGTAAGGGATCTGGTGCACACTGCAGAACAAAAC
ACATCGGAGTGCGCTGGCAAGGTATTCGAGAGTGGATTCGAGAAGGAGTA
TTGGCGTTGAATTACGTGCAGACCGACGACCAACTTGCTGACGTTTGACA
GAGGGAAAAGTGGCAATTCAACTGAATACAGAAGCATGGTAGGATCAATC
ATGCACGCCTCGATAAGAACTAGACCCGATATAGCATACGCGGTACACCA
AGCAGCACGTCGTATGGAGGACCCATTTCGGGAAGACTTCAGTGCATGCA
AGCGCATTTTTCGTTATCTCAGTACTGTGGCTGACCTCGGCATTACATTC
GGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTG
GGCGGAAGATGTTGAGGACCGAAAGTCCACAACAGGATACGTAATCAAAC
GAAATGGTGGTGCGATACGTTGGTGCTGTAGGAAGCAACAGTTAGTCACG
TGGTCCAGTATAGAGGCAGAGTACGTTGCTGCACGAGAAGCGGGAAAGGA
GGTAATATATCTTAGGGCGTTACTAGGATCGATAGGTTTCTACTGCAGGG
GGAACACGACATTTTTTAGGGACAATGAATCAGCTATTAGGCTCAGTAAG
GGATCTGGTGCACACTGCAGAACAAAACACATCGGAGTGCGCTGGCAAGG
TATTCGAGAGTGGATTCGAGAAGGAGTATTGGCGTTGAATTACGTGCAGA
CCGACGACCAACTTGCTGACGTTTGA
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