mRNA_H-paniculata_contig15787.3355.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15787.3355.1
Unique NamemRNA_H-paniculata_contig15787.3355.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15787.3355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15787contigH-paniculata_contig15787:5015..5402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15787.3355.1prot_H-paniculata_contig15787.3355.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15787 5047..5373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.5400877-UTR-H-paniculata_contig15787:5014..50461622929259.5400877-UTR-H-paniculata_contig15787:5014..5046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15787 5015..5046 +
1691480791.0162544-UTR-H-paniculata_contig15787:5014..50461691480791.0162544-UTR-H-paniculata_contig15787:5014..5046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15787 5015..5046 +
1622929259.5609362-UTR-H-paniculata_contig15787:5373..54021622929259.5609362-UTR-H-paniculata_contig15787:5373..5402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15787 5374..5402 +
1691480791.0357842-UTR-H-paniculata_contig15787:5373..54021691480791.0357842-UTR-H-paniculata_contig15787:5373..5402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15787 5374..5402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.5509098-CDS-H-paniculata_contig15787:5046..53731622929259.5509098-CDS-H-paniculata_contig15787:5046..5373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15787 5047..5373 +
1691480791.0264964-CDS-H-paniculata_contig15787:5046..53731691480791.0264964-CDS-H-paniculata_contig15787:5046..5373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15787 5047..5373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15787.3355.1

>prot_H-paniculata_contig15787.3355.1 ID=prot_H-paniculata_contig15787.3355.1|Name=mRNA_H-paniculata_contig15787.3355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MQLTLKSRLYTYSYLSEKFHQIGDRIFCYPSVAACHLGSRISSPPKAGRL
RGGVRNHEAAIMSQAIWGDINSRGRRGRGKESACSPIAYYCFMSAIKRTE
SDCFRVQR*
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mRNA from alignment at H-paniculata_contig15787:5015..5402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15787.3355.1 ID=mRNA_H-paniculata_contig15787.3355.1|Name=mRNA_H-paniculata_contig15787.3355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=388bp|location=Sequence derived from alignment at H-paniculata_contig15787:5015..5402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAATAACTAAAATGTAGCCATGTTTAAGCTATGCAGCTCACCTTAAAA
TCTCGCTTGTATACATACTCTTACTTATCAGAAAAATTTCATCAAATTGG
GGATCGTATATTCTGTTATCCCTCGGTGGCAGCGTGCCATCTCGGTTCAC
GCATATCATCCCCGCCCAAGGCAGGCAGACTTCGGGGAGGAGTGCGAAAT
CACGAGGCGGCGATCATGTCCCAGGCGATTTGGGGTGATATCAATTCCCG
AGGCAGAAGGGGGCGGGGGAAGGAGAGTGCTTGCTCCCCCATCGCTTACT
ACTGCTTCATGTCCGCGATTAAACGAACTGAATCTGATTGCTTTCGTGTG
CAAAGGTGATCGAGGCTCATTAAAGAACTACACACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15787:5015..5402+

>mRNA_H-paniculata_contig15787.3355.1 ID=mRNA_H-paniculata_contig15787.3355.1|Name=mRNA_H-paniculata_contig15787.3355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig15787:5015..5402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTCACCTTAAAATCTCGCTTGTATACATACTCTTACTTATCAGA
AAAATTTCATCAAATTGGGGATCGTATATTCTGTTATCCCTCGGTGGCAG
CGTGCCATCTCGGTTCACGCATATCATCCCCGCCCAAGGCAGGCAGACTT
CGGGGAGGAGTGCGAAATCACGAGGCGGCGATCATGTCCCAGGCGATTTG
GGGTGATATCAATTCCCGAGGCAGAAGGGGGCGGGGGAAGGAGAGTGCTT
GCTCCCCCATCGCTTACTACTGCTTCATGTCCGCGATTAAACGAACTGAA
TCTGATTGCTTTCGTGTGCAAAGGTGAATGCAGCTCACCTTAAAATCTCG
CTTGTATACATACTCTTACTTATCAGAAAAATTTCATCAAATTGGGGATC
GTATATTCTGTTATCCCTCGGTGGCAGCGTGCCATCTCGGTTCACGCATA
TCATCCCCGCCCAAGGCAGGCAGACTTCGGGGAGGAGTGCGAAATCACGA
GGCGGCGATCATGTCCCAGGCGATTTGGGGTGATATCAATTCCCGAGGCA
GAAGGGGGCGGGGGAAGGAGAGTGCTTGCTCCCCCATCGCTTACTACTGC
TTCATGTCCGCGATTAAACGAACTGAATCTGATTGCTTTCGTGTGCAAAG
GTGA
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