mRNA_H-paniculata_contig15786.3354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15786.3354.1
Unique NamemRNA_H-paniculata_contig15786.3354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A6H5KLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM8_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 3.750e-132
Identity = 194/213 (91.08%), Postives = 206/213 (96.71%), Query Frame = 1 
Query:    1 VTVEAGREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            V+VEAG++ +   VPAPV+SFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWP+LVH+MDQR IVKG EGPIVVILAPTRELAGQIY+EANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGR+IEMIKLK+TNM+RCTMM+LDEADRMFDMGFEYQMRSIV QTRPDRQTLMFSATFKRRVQ
Sbjct:  249 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVKGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 461
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: D7G1S4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S4_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 4.210e-130
Identity = 196/213 (92.02%), Postives = 206/213 (96.71%), Query Frame = 1 
Query:    1 VTVEAGREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            V+VEAG++ +   VPAPV+SFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWP+LVH+MDQR IV+G EGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGR+IEMIKLKSTNM+RCTMMILDEADRMFDMGFEYQMRSIV QTRPDRQTLMFSATFKRRVQ
Sbjct:  167 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGQEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKSTNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 379
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A7S3UTY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY6_HETAK)

HSP 1 Score: 288 bits (737), Expect = 1.800e-93
Identity = 142/200 (71.00%), Postives = 164/200 (82.00%), Query Frame = 1 
Query:   40 VPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            +P P+ SF+HAG D  L   + R G E PTPIQAQALPV + GRD+IG+A+TGSGKT AF WP L H +DQR I KG EGPI VIL+PTRELA QIY+E  KFAK  G KVCA+ GGAGK+EMQK LK GPE+VVATPGRLIEMIK K+TNM+RCT+ +LDEADRMF+MGFEYQMRSIV Q RPDRQTLMFSATFK+++Q
Sbjct:   21 LPRPLPSFRHAGLDPKLAQTIARLGLENPTPIQAQALPVALGGRDLIGIAKTGSGKTYAFAWPVLTHALDQRYIEKG-EGPIAVILSPTRELASQIYAEVKKFAKPLGAKVCALIGGAGKYEMQKELKTGPEVVVATPGRLIEMIKCKATNMRRCTICVLDEADRMFEMGFEYQMRSIVDQIRPDRQTLMFSATFKKKIQ 219
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A835ZDT0_9STRA (Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT0_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.830e-87
Identity = 135/177 (76.27%), Postives = 155/177 (87.57%), Query Frame = 1 
Query:  109 QGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            +G EAPTPIQAQALPV +SGRD+IGVA+TGSGKT AFVWP LVHVM QR I  G EGPI VIL+PTRELA QI+ +A KFAK+ G  VCAV+GGAGKWEMQKAL+EGPEIVVATPGRLIEMIK+K+TN+ RCT ++LDEADRMFD+GF YQMRSIV Q RP RQT++FSATFKR+V+
Sbjct:   33 EGLEAPTPIQAQALPVALSGRDLIGVAKTGSGKTFAFVWPVLVHVMAQREIEDG-EGPIAVILSPTRELATQIHGQAKKFAKQLGANVCAVFGGAGKWEMQKALREGPEIVVATPGRLIEMIKIKATNLARCTCVVLDEADRMFDLGFGYQMRSIVDQVRPSRQTMLFSATFKRKVE 208
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A4D9D4S8_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4S8_9STRA)

HSP 1 Score: 274 bits (701), Expect = 3.740e-84
Identity = 135/198 (68.18%), Postives = 169/198 (85.35%), Query Frame = 1 
Query:   49 PVESFKHA-GFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            P+ SFKHA GF + LL E++++GF+APTPIQAQALP+ ++GRD++G+AQTGSGKTLAFVWPALVH+MDQ  +VKG EGPIV+ILAPTRELA QIY EA KFAK +G +V AV+GGAGKWE  K LK G EI++ATPGRL+E +K K+T + RCT ++LDEADRMFD+GFE Q+ S++ Q RPDRQ+LMFSATFKR+V+
Sbjct:  294 PIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKG-EGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATTLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVE 490
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A023GNE8_AMBTT (RNA helicase (Fragment) n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GNE8_AMBTT)

HSP 1 Score: 262 bits (670), Expect = 1.500e-81
Identity = 130/211 (61.61%), Postives = 160/211 (75.83%), Query Frame = 1 
Query:    7 VEAGREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            V+ G ++  A  P PV SF H GFD+ LL  + +  +  P+PIQAQ +PV +SGRDMIG+A+TGSGKT AF+WP L H+MDQR +  G EGPI +ILAPTRELA QIY EA +F K YG      +GG  KWE  KAL+EG EIVVATPGR+I+MIK+K+TN++R T ++LDEADRMFDMGFE Q+RSI    RPDRQTLMFSATFKR+V+
Sbjct:   40 VKLGVKVTGACPPKPVTSFGHLGFDEALLKAIRKAEYSQPSPIQAQGVPVALSGRDMIGIAKTGSGKTAAFIWPLLTHIMDQRELAPG-EGPIGLILAPTRELAQQIYLEAKRFGKVYGVAAACCFGGGSKWEQSKALEEGAEIVVATPGRMIDMIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLMFSATFKRKVE 249
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A4S2KBC0_9HYME (RNA helicase n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4S2KBC0_9HYME)

HSP 1 Score: 258 bits (660), Expect = 3.400e-80
Identity = 125/208 (60.10%), Postives = 159/208 (76.44%), Query Frame = 1 
Query:   16 GREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            G ++   S P PV SF H GFD+ L+  + +  +  PTPIQAQA+P  +SGRD+IG+A+TGSGKT AF+WP LVH+MDQR +  G +GPI +ILAPTREL+ QIY EA KF K Y  +VC  YGG  KWE  KAL+ G EIVVATPGR+I+++K+K+TN+ R T ++LDEADRMFDMGFE Q+RSI    RPDRQTL+FSATFK++V+
Sbjct:  241 GIKVSGPSPPNPVTSFGHFGFDEALIKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRELKAG-DGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVE 447
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A443SEW0_9ACAR (RNA helicase (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEW0_9ACAR)

HSP 1 Score: 257 bits (656), Expect = 5.410e-80
Identity = 125/202 (61.88%), Postives = 160/202 (79.21%), Query Frame = 1 
Query:   34 ASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            AS P PV SF H GFD+ L+  + +Q +  PTPIQAQ +PVV+SGRD+IG+A+TGSGKT A++WP LVH+MDQ+ +  G +GPI +ILAPTREL+ QIY EA KF K YG  V   YGGA K+E+ K ++ G EI+VATPGR+I+MIK+K+TN++R TM++LDEADRMFDMGFE Q+RSI    RPDRQ LMFSATFK++V+
Sbjct:  232 ASPPKPVTSFAHFGFDEQLMKIIRKQEYTQPTPIQAQGIPVVLSGRDLIGIAKTGSGKTAAYIWPMLVHIMDQKELEPG-DGPIGLILAPTRELSQQIYIEAKKFGKAYGVSVICAYGGANKYELSKDMEAGAEIIVATPGRMIDMIKMKATNLRRVTMLVLDEADRMFDMGFEVQVRSICDHVRPDRQCLMFSATFKKKVE 432
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: A0A662X9K7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9K7_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.220e-80
Identity = 127/210 (60.48%), Postives = 162/210 (77.14%), Query Frame = 1 
Query:   10 EAGREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            E    ++ ++VPAPV SF H GFD  +L+ +++ G EAPT IQAQA PV ++GRD+IG+A+TGSGKTLAF  P + HVMDQR + +G EGPI V+LAPTRELA Q + +A KF   YG    A+YGG GKWE  +AL++G E+VVATPGRLIEMI+ K+  M R T ++LDEADRMF+MGFE Q+RS++ Q RPDRQTLMFSATF+RRV+
Sbjct:  197 ELSVRVEGSAVPAPVRSFMHLGFDRKMLAMLMKLGLEAPTAIQAQAFPVALAGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRG-EGPIAVVLAPTRELAHQTFVQAKKFLGIYGASCAAIYGGTGKWEQVQALRKGAEVVVATPGRLIEMIRKKTAPMSRVTFVVLDEADRMFEMGFEPQLRSVMGQIRPDRQTLMFSATFRRRVE 405
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BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Match: H3G608_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G608_PHYRM)

HSP 1 Score: 258 bits (658), Expect = 6.590e-80
Identity = 132/210 (62.86%), Postives = 160/210 (76.19%), Query Frame = 1 
Query:   10 EAGREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQTLMFSATFKRRVQ 639
            E    +D A VPAPV SF H GFD  +L  +++ G EAPT IQAQA PV +SGRD+IG+A+TGSGKTLAF  P + HVMDQR + +G EGPI V+LAPTRELA Q Y +A KF   YG    A+YGGAGKWE  +AL++G E+VVATPGRLIEMI+ KS  M R T M+LDEADRMF+MGFE Q+RS++ Q RPD QTLMFSATF+RR++
Sbjct:  154 ELSVRVDGAVVPAPVRSFMHLGFDRKMLGMLMKLGLEAPTAIQAQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRG-EGPIAVVLAPTRELAHQTYVQAKKFLGVYGASCAAIYGGAGKWEQVQALRKGVEVVVATPGRLIEMIRKKSAPMNRVTFMVLDEADRMFEMGFEPQLRSVMGQIRPDCQTLMFSATFRRRIE 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15786.3354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLM8_9PHAE3.750e-13291.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S4_ECTSI4.210e-13092.02DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S3UTY6_HETAK1.800e-9371.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZDT0_9STRA1.830e-8776.27Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribon... [more]
A0A4D9D4S8_9STRA3.740e-8468.18Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A023GNE8_AMBTT1.500e-8161.61RNA helicase (Fragment) n=1 Tax=Amblyomma triste T... [more]
A0A4S2KBC0_9HYME3.400e-8060.10RNA helicase n=1 Tax=Temnothorax longispinosus Tax... [more]
A0A443SEW0_9ACAR5.410e-8061.88RNA helicase (Fragment) n=1 Tax=Leptotrombidium de... [more]
A0A662X9K7_9STRA6.220e-8060.48Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
H3G608_PHYRM6.590e-8062.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15786contigH-paniculata_contig15786:1108..5904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.6
Seed ortholog evalue4.8e-106
Seed eggNOG ortholog2880.D7G1S4
Preferred nameDDX42
KEGG koko:K12835
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0010941,GO:0015030,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0033036,GO:0034641,GO:0042623,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051179,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.RNA secondary structure unwinding
EggNOG OGsCOG0513@1,KOG0339@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons4
Model size639
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15786.3354.1prot_H-paniculata_contig15786.3354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15786 1108..5904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.196488-CDS-H-paniculata_contig15786:1107..12331622929259.196488-CDS-H-paniculata_contig15786:1107..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 1108..1233 -
1691480790.9761736-CDS-H-paniculata_contig15786:1107..12331691480790.9761736-CDS-H-paniculata_contig15786:1107..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 1108..1233 -
1622929259.209603-CDS-H-paniculata_contig15786:2763..29201622929259.209603-CDS-H-paniculata_contig15786:2763..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 2764..2920 -
1691480790.9892519-CDS-H-paniculata_contig15786:2763..29201691480790.9892519-CDS-H-paniculata_contig15786:2763..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 2764..2920 -
1622929259.2205808-CDS-H-paniculata_contig15786:4240..44311622929259.2205808-CDS-H-paniculata_contig15786:4240..4431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 4241..4431 -
1691480790.998438-CDS-H-paniculata_contig15786:4240..44311691480790.998438-CDS-H-paniculata_contig15786:4240..4431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 4241..4431 -
1622929259.4915645-CDS-H-paniculata_contig15786:5739..59041622929259.4915645-CDS-H-paniculata_contig15786:5739..5904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 5740..5904 -
1691480791.0074635-CDS-H-paniculata_contig15786:5739..59041691480791.0074635-CDS-H-paniculata_contig15786:5739..5904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15786 5740..5904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15786.3354.1

>prot_H-paniculata_contig15786.3354.1 ID=prot_H-paniculata_contig15786.3354.1|Name=mRNA_H-paniculata_contig15786.3354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
VTVEAGREIDHASVPAPVESFKHAGFDDLLLSEVVRQGFEAPTPIQAQAL
PVVMSGRDMIGVAQTGSGKTLAFVWPALVHVMDQRVIVKGMEGPIVVILA
PTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVAT
PGRLIEMIKLKSTNMQRCTMMILDEADRMFDMGFEYQMRSIVQQTRPDRQ
TLMFSATFKRRVQ
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mRNA from alignment at H-paniculata_contig15786:1108..5904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15786.3354.1 ID=mRNA_H-paniculata_contig15786.3354.1|Name=mRNA_H-paniculata_contig15786.3354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4797bp|location=Sequence derived from alignment at H-paniculata_contig15786:1108..5904- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCGTGGAGGCGGGAAGAGAAATAGACCACGCGAGTGTTCCTGCCCC
AGTGGAGTCGTTCAAGCACGCTGGCTTCGATGACCTGTTGCTGTCTGAGG
TGGTTCGTCAAGGCTTTGAGGCGCCCACGCCGATCCAGGCACAAGCGTTG
CCGGTCGTGATGTCGGTGAGGAGAGAGTTGGAAGGATGAACGCGGTGTTG
AATGATGTGGTTTTCTAGTTTTCTAATTTTCTCATTATTTGAGGGGTGGG
TCCTTTTGAATCCGACGAGTGTCATGGTGACCGTCTCGCTCTTTTTTTTT
GTTTTTGGTTTTTCACAAGTCAGTATACGGGGGAGACAGCGGAGAAAGGA
GCTTGGCGGAAGAGACGGCGAGTGATGGACGAAAATTGTATACGCCTGTT
TGTTTGCGAGTGTATATTATATCTATATCATTTTTCTTGGACTGAACATA
TAACATGAACAAATGGCACGGCATGATGGACGGACGTGAGCGAAGAGGGG
ACAGGTTGGTCATGAAACCTCACACATATATGCCTCGTGGGGTGGCGCAG
CACATCGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTTGAGCC
CCTGACCCTGGTTCGGCGTCGGTTAATTGAACGTGGCATAGCCCCTGTAC
ATGGTTTCATCGCCTGGACGAATACAAATACTTTTGAATGGCTTTCACTA
AAATCTGAAAGTATTCGCTTGATTTTCAGAATAAGCGGACACATGGATTA
AAGTACCCACCCCTGTCCATTATATTTCCGACTGTTATTAGCAGTCGTGG
ATAGTCCGGGACACATAAAACACACAAGCTCGATCTGAAACTCAGGCGAA
TACTTGTTAGTTTTCGTGGCGAATACGCCAGGTATTCGTATTTTTCCGGG
CGGGTGCATGGTTTGCTTGACTTGCGTGGGGTGGTATTGCATCCCTTGGA
AAACAGAAGTTGGGAGAGAAAGCGGAAGAGGCTTGCGTGCGGTATTCGTG
GCGTTGCGGCGGATGGAATGGAAGTAGACAAGTTTAGGTATCTTAGAGTG
CTGGCTTTTTTCCCAAGTGGAGCGAGCGATGACGTGGTGCTATAGATGTG
GTCTTGGTTGTGGGTCGTTGGTTTGTTTTCTTTTTTCTTTTTCTCTTTTT
TTTTGTGGTTAGCTTGTTTTTTAAGTTTAAAGAGTAAATTAGATTAGATA
CCTTTCGACTTTATCTAGCTTTTAAACTTTTTTTTTTTTTCTCGTTCCAT
TTTTTTCCTAATTCCACTGATGTGTGTGTTTTGCGATTTATTTTATTTTA
TTTTTGTTAATGTTTCTTCTCTTGTTGGTGGCTACTATTTATTTTCAATG
TTCATTTTCAATTTTACGTTCACTTTTTTTTTTTTTTTTTCTTTTTCATT
TTCATTTTTTTGGTCTCCTTCCCTACCCATTGTTTTTCTGTGAAATATTC
ATGTTCTTCTTGGCTCCAATCAGGGACGAGACATGATCGGAGTAGCGCAG
ACAGGCTCGGGAAAGACGCTGGCCTTCGTGTGGCCAGCCCTGGTTCATGT
AATGGATCAACGGGTCATCGTGAAGGGAATGGAGGGTCCGATCGTCGTCA
TTCTTGCCCCGACACGAGAGCTGGCAGGCCAGATTTACTCCGAGGCCAAC
AAGTTCGCTAAGAGGTCAGTCAGTTTATCCTCCAGCCTGCCCTGTTGTTG
GATTTATTCTTACTTGTACGTGGTGTTTTATTAGATTGTGTCAGCGTTGT
TTGTGTCTTGTACTCTTTATATTTGGAGTAACCTAGTGTTGTTACCTTTT
TTCTTTTTTTCGTTTTTCACTTTGACCGCGAACAGTTTTTCATGAGATGG
GCACAAAAAGCCGGGACGTGTCATGCTGCTACCACGGTAGTAGTAGTTCC
AGAGGTGGTTATTTGGGGAGATGTCGGCATAATAACGTTCGCGGTGAAAA
GTGTTTCCGTTTTTTTTAGGGGGCTGCTGTTCGCGGACCCCATCACGTTC
GGTGTTGGATGAGGTACATCCACTTTTTTTGTCCCGGATTAAGTATTTAG
GGGCGTTGCAAGCTGCAGACCACAGTGGAGGTGTTGAGCGCGGCCATGCA
AGATAACGGACAGGTAAAACTTTCCGTATCTCTGGCTGTACCTCTGATTG
TACCTCTGGCTATACTCGTGTCGTGCCGTGGCATGTTAGCTACGACCGAG
GCAACAACATCAGAAATGAAAAGGGAGAGAGGTGTTAGTAAGTTCGTTAG
GACGTGCTTGCATCAATCATACAGGGAATTAGATGGTTACAATACTACGC
GGCGGCCGTGCGGTAACCGAATGCAGGTATATGTGCGGAAGTTAGCTGTG
TTGTACGTGATGCACACGCAGGCAGACAACCACGCATCTACCGTGACAGA
CTGTTTATGACGGATATATTAGGGGGCTTTCGGGCTTGAATCGAAGTATT
CGCACTACCATGCTCGCGCACTGTGCACACGCATCTGGGCATTCGTTGTA
TCGTATTATTCGGGGAGGGGGGGGGAGGTGTGAGCGTTTTTTTTTTTCCG
TTGTCAAAGAGGGGGTGTGATCTCCGCGAAAGGGCACAAACAAGTTTGTA
TTCGTTGTCCTTTTCTTGAATTTCACAAGACGTGCAGCATCACATTAAGC
ACTTTATATTTTTTCTGTATTATAATGGGGTAATAAACATGCGACCAAGT
AGCGCCATGGCAATGCCTGTATGCTAGGCCATGATTTTTGTCTTAGCCCA
TCCACAACGGCATATTCTTTTTTGTTAAGTTATTTGAGCACAGAACTGAA
AAAAAATGTTCTGAATCTGCACCCACTTAGCGGAATCAGCTTCATTCATT
CATTCATTCATTCATTCATTAACATTCGAATCAGTTACAATGTAATGGTA
CTAAGCAGTGCCACAGCTATGCCTGTATGCTTTACTATGTTTAGTTACTG
AGGACTTCGCGGGCTGCTTCGGTAAAATCTTCAGGTATGGATGCAAAGTA
TGCGCTGTATATGGCGGTGCCGGAAAGTGGGAGATGCAGAAGGCCCTGAA
GGAGGGGCCGGAGATCGTAGTGGCGACGCCTGGGCGACTAATCGAGATGA
TCAAGCTGAAATCCACTAACATGCAGAGGTGCACCATGATGGTGAGAGAG
AAGAGGAGTGGACAGAAGTAGTCTAGCAGGTTTTTGACGTTGCATTGTAT
GTGAAGAGTTGGGGTACGGTAGGGATGGCGGGGGATGTTTCGAGCCACTT
CTTTGAGGAATGACTGTTTCTCAAAGCAGCTAGGAATAAAAAAACTCAGT
ATTGAAACAAGTTCAAACACAAAAGCGTGCGTTCACACATCTTCAGAGGT
GCACAATGGACATGACGCACGATCCGGAACGACCGTGCTGTTTCAAGGGG
AAGGTATAATTTACCGAGCCACTCCCCAAAATGTCTCAAACTGTGACCAA
AGAGACTCAGCGATTCCCCTCCCCCTTACCGCAGCTCTGTCCTTCCGAGG
AAGGGTTGTCAATGGTCTTACCAACTTCGACATGCAAAGCATAAGCACCC
CCCACTCCCTACGATATCCTTACTTTTTGCCGCCGGTCATGATCATTTTT
CAAATCCCAGTCTCTCGAAAACTGCTACGTTCGGTGTTGGCGTGATCACC
ATTGCAATGTCCGGAGGTATCGCACTAACGCGATGCGAATGTTTTTTATG
CACCAAAACTATTATATCAGGAGCGGAGACGTCACGTGGTCGAGAGAACC
CACTTGTCTTGGCGAATAGATGTTACCCAATGGCACATTTTTCGTTTTTG
TCACTATTAAGGAGGAACATAATAATCAGGAACATTTTTTTGGTTTTTCG
GATTTTTTTTTTTTTTCCCCCGTTGGTCTACAGATTTTCGCTTCTAGCTG
AAAACAAAAACACACTCTAAAAGCACTTGCACAGGCATGCAGCAACCGAG
TGGTGCATATCGCATTGCATGAGTTACACCTCAAAATATCAATTTTCTAA
TTTGCTCTTGATTATTATGTTCCTCCGTAATAGCGCTGAAGTTCTGAGAT
ATCGTCGTTTTTACAGCGTCCGCACTCTGTTGATATGGATTCCTACTTGT
GTCGGTTTTTAACGGTCAAGTGACAACGGGAAGTTGTGTCGTTGGAAGGA
TCCATTAATCTCGTCCAGATACATGTGTCTTTTAGCTGGAGTCATTGTGT
CGACAGCGCGGGGTCTTGCTCTTCAATTTTGTGTTGGTTGGTGTCTGTAT
TGATTCGTAAAGGGTTTTTAATTCGTGTTCTTTCCCGAATTTGTGGGTGA
GAGTAGTAGGTCCGCCCCCCTTAATTTCGTCGTCCTTAACGTGGGACCTG
GCATCAACCTTTGTTTAGTAAGATGTGAAGATGGCACTGGAGAAAAAGTT
CATGTCTAATGACTCGTGCAGCATTGCGAGCTAGTTATATCGTTCGCATG
GCTGTTCTGTGTATAGAATATCTTTCACTGTAATGTGTTATGTGTATGTA
TGTGTGTAATTTTATGAGTGTGGTGACTGGATGTGTTTTGCGATCGCCGA
GATGACCGTGAACATTCAATGAGCGTGCCGTTTTTGAATCGCGCTGTTTT
CTGTTTTTCCTACCGTACGGCGGTGGCCTATTTTGCCTGCGCCTGTGCCT
GTGCCTGTGCCTTGCGGACAGATTCTAGATGAGGCGGACCGGATGTTTGA
CATGGGGTTCGAGTATCAGATGCGCTCAATTGTGCAGCAGACCCGACCTG
ACCGGCAGACGCTCATGTTCAGCGCCACTTTCAAGCGGCGGGTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15786:1108..5904-

>mRNA_H-paniculata_contig15786.3354.1 ID=mRNA_H-paniculata_contig15786.3354.1|Name=mRNA_H-paniculata_contig15786.3354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig15786:1108..5904- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCGTGGAGGCGGGAAGAGAAATAGACCACGCGAGTGTTCCTGCCCC
AGTGGAGTCGTTCAAGCACGCTGGCTTCGATGACCTGTTGCTGTCTGAGG
TGGTTCGTCAAGGCTTTGAGGCGCCCACGCCGATCCAGGCACAAGCGTTG
CCGGTCGTGATGTCGGTGACCGTGGAGGCGGGAAGAGAAATAGACCACGC
GAGTGTTCCTGCCCCAGTGGAGTCGTTCAAGCACGCTGGCTTCGATGACC
TGTTGCTGTCTGAGGTGGTTCGTCAAGGCTTTGAGGCGCCCACGCCGATC
CAGGCACAAGCGTTGCCGGTCGTGATGTCGGGACGAGACATGATCGGAGT
AGCGCAGACAGGCTCGGGAAAGACGCTGGCCTTCGTGTGGCCAGCCCTGG
TTCATGTAATGGATCAACGGGTCATCGTGAAGGGAATGGAGGGTCCGATC
GTCGTCATTCTTGCCCCGACACGAGAGCTGGCAGGCCAGATTTACTCCGA
GGCCAACAAGTTCGCTAAGAGGGACGAGACATGATCGGAGTAGCGCAGAC
AGGCTCGGGAAAGACGCTGGCCTTCGTGTGGCCAGCCCTGGTTCATGTAA
TGGATCAACGGGTCATCGTGAAGGGAATGGAGGGTCCGATCGTCGTCATT
CTTGCCCCGACACGAGAGCTGGCAGGCCAGATTTACTCCGAGGCCAACAA
GTTCGCTAAGAGGTATGGATGCAAAGTATGCGCTGTATATGGCGGTGCCG
GAAAGTGGGAGATGCAGAAGGCCCTGAAGGAGGGGCCGGAGATCGTAGTG
GCGACGCCTGGGCGACTAATCGAGATGATCAAGCTGAAATCCACTAACAT
GCAGAGGTGCACCATGATGGTATGGATGCAAAGTATGCGCTGTATATGGC
GGTGCCGGAAAGTGGGAGATGCAGAAGGCCCTGAAGGAGGGGCCGGAGAT
CGTAGTGGCGACGCCTGGGCGACTAATCGAGATGATCAAGCTGAAATCCA
CTAACATGCAGAGGTGCACCATGATGATTCTAGATGAGGCGGACCGGATG
TTTGACATGGGGTTCGAGTATCAGATGCGCTCAATTGTGCAGCAGACCCG
ACCTGACCGGCAGACGCTCATGTTCAGCGCCACTTTCAAGCGGCGGGTGC
AGATTCTAGATGAGGCGGACCGGATGTTTGACATGGGGTTCGAGTATCAG
ATGCGCTCAATTGTGCAGCAGACCCGACCTGACCGGCAGACGCTCATGTT
CAGCGCCACTTTCAAGCGGCGGGTGCAG
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