mRNA_H-paniculata_contig15774.3348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15774.3348.1
Unique NamemRNA_H-paniculata_contig15774.3348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15774.3348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15774contigH-paniculata_contig15774:2639..3783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size213
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15774.3348.1prot_H-paniculata_contig15774.3348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15774 2639..3738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.2624636-CDS-H-paniculata_contig15774:2638..27011622929258.2624636-CDS-H-paniculata_contig15774:2638..2701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15774 2639..2701 +
1691480790.567668-CDS-H-paniculata_contig15774:2638..27011691480790.567668-CDS-H-paniculata_contig15774:2638..2701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15774 2639..2701 +
1622929258.2731707-CDS-H-paniculata_contig15774:3633..37381622929258.2731707-CDS-H-paniculata_contig15774:3633..3738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15774 3634..3738 +
1691480790.5813797-CDS-H-paniculata_contig15774:3633..37381691480790.5813797-CDS-H-paniculata_contig15774:3633..3738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15774 3634..3738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929258.2885358-UTR-H-paniculata_contig15774:3738..37831622929258.2885358-UTR-H-paniculata_contig15774:3738..3783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15774 3739..3783 +
1691480790.5958517-UTR-H-paniculata_contig15774:3738..37831691480790.5958517-UTR-H-paniculata_contig15774:3738..3783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15774 3739..3783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15774.3348.1

>prot_H-paniculata_contig15774.3348.1 ID=prot_H-paniculata_contig15774.3348.1|Name=mRNA_H-paniculata_contig15774.3348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MAFPLHLPTERNNTRNVQAGKVADTVLRVLHGAITATTPGMSLKQKFAEK
NPYNS*
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mRNA from alignment at H-paniculata_contig15774:2639..3783+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15774.3348.1 ID=mRNA_H-paniculata_contig15774.3348.1|Name=mRNA_H-paniculata_contig15774.3348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-paniculata_contig15774:2639..3783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTTCCATTGCATCTTCCGACAGAACGGAACAACACCCGAAATGT
TCAAGCTGGCAAGGTGTGTTCAAAATACGTGTTTACGGTGTTTCCGTATC
TTCCACACTCTTCTCTCTCTCTCTCTCTCTGCCTATGTTGGTGTCCACGA
TATGTTGGTATGTTGGTGTACTGGTACGTGTGTGTCGATGTATGTACGTC
TATGCTCATGCTCACATTGATTCATGGCCAAAATCTAGCCCGTTGTCACA
AACAGATACAATGCCCTACTAGGAGGAAAGAATATATACTCCGGGGTATA
TACATAATATATATGGTTGTGCATGCGTCTGTGTGTGTGTTTGTTCTTGT
AGTATATTTTATTATGACTGGACGCGCGCGTCTATGTTACGATGCGTGTT
CGGTTTGTGTGCGCGTGTGATTGTGTCTCACTCTTTTTTTGTCGTTGTCT
GTGTACGTAGACGTTGGTACTTGTGGTATAGTGTGGACCGAAGTACGAGG
AGACCGGGGATGAGAAGCCGTGTGCGTTGGTGTGAAGCCTCTCAAGCAAC
TGCATTAGGCCGTGCGCGTTGGTGTCTTAGTGGGGTCGAGACAGAGGAGT
CGCCGTCCGTGCTGGTAGGTCTGGCTCCTCAAAATACCAGTCTTGAGCAG
TGTACGTTGTTGCGGTGGAAAACTTATAACAAACAAGGCGTGCCCACGCA
CCCGTCCCGGCCTCCCATGTAATTCGAGTTGTCGCTCCTCCCCCCTCCTC
TCCCGCAATGTTCCCCGCCGCAAGAAGAAAAGCAATTACTATGAACACAG
TGCAGTGTTTCAGAGGTTAGGGTTCGGTGACTCGTCGCAGGTGCATTTGC
CGTGTGCGTTCCATTCTTTTTCGACATAAACTTGTATTAAATGACTGCCG
ACGTCTAAATGGTTTAGCTACATTACAGCCGGAGGTGCTGATCATTCTAA
TAGTTTACGTACTTGTGAAATCGGTGCTGTGCTTTTTTATCACAGGTCGC
TGACACCGTGCTCAGGGTTCTTCATGGCGCCATTACCGCTACTACGCCAG
GGATGAGCTTAAAACAAAAATTTGCTGAAAAAAATCCGTACAACAGCTAA
GTCAGATAAGCGAGAGAAAACCCCCCCTCCCCCCCCCAAAAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15774:2639..3783+

>mRNA_H-paniculata_contig15774.3348.1 ID=mRNA_H-paniculata_contig15774.3348.1|Name=mRNA_H-paniculata_contig15774.3348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig15774:2639..3783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTTCCATTGCATCTTCCGACAGAACGGAACAACACCCGAAATGT
TCAAGCTGGCAAGATGGCATTTCCATTGCATCTTCCGACAGAACGGAACA
ACACCCGAAATGTTCAAGCTGGCAAGGTCGCTGACACCGTGCTCAGGGTT
CTTCATGGCGCCATTACCGCTACTACGCCAGGGATGAGCTTAAAACAAAA
ATTTGCTGAAAAAAATCCGTACAACAGCTAAGTCGCTGACACCGTGCTCA
GGGTTCTTCATGGCGCCATTACCGCTACTACGCCAGGGATGAGCTTAAAA
CAAAAATTTGCTGAAAAAAATCCGTACAACAGCTAA
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