mRNA_H-paniculata_contig15769.3344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15769.3344.1
Unique NamemRNA_H-paniculata_contig15769.3344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 3.030e-73
Identity = 160/309 (51.78%), Postives = 190/309 (61.49%), Query Frame = 1 
Query:  175 LVNFGVRAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDIL----------------RPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSG------VSPRCEVPVSSIVCVHLEPPLFVPVGSAAENGDPSGNGFPATSSSSSXXXAWPSTGRGGTSESSWGDDNGSREKEEERAYWVEEMCATNGTENST-LWAHLDDVEEAVWRYKV 1032
            +V+FGVR   FVVG +TAEEV++  NPFQ+LISGA WLVR+G N+VEASAR+GHLDIL                             G  LDD+L AKLARTA+GHD+EGRLIL+QT+GAAAGSD D A+ DGLDL+ELADVLV+AGAVNAINLVGG P+AM  N S IVDP G CS       DS S G        PRCE+PVSSIVCVHL+PP  +  G+   +G PS +  P +     XXX                        EE R  W  E+C  NGT N+T LW HLD+VEE+V RYK+
Sbjct:  635 MVSFGVRGDSFVVGTITAEEVLDEQNPFQNLISGAGWLVRAGVNHVEASARDGHLDILLDDDXXXXXXXXXXXXXXXXXXXXXXXXEGGALDDLLVAKLARTAIGHDSEGRLILLQTSGAAAGSDQDTAIPDGLDLSELADVLVEAGAVNAINLVGGAPSAMMVNGSAIVDPAGPCST---SAEDSDSYGGFRDGSALPRCEIPVSSIVCVHLDPPPLIE-GAEGIDGTPSPSLQPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDNTEEARLRWTRELCGGNGTGNATSLWEHLDNVEESVLRYKI 939
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A6H5KPM3_9PHAE (NAGPA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM3_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.460e-65
Identity = 146/300 (48.67%), Postives = 176/300 (58.67%), Query Frame = 1 
Query:  175 LVNFGVRAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDIL--------------RPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVHLEPPLFVPVGSAAENGDPSGNGFPATSSSSSXXXAWPSTGRGGTSESSWGDDNGSREKEEERAYWVEEMCATNGTENST-LWAHLDDVEEAVWRYK 1029
            +V+FGVR   FVVG +TAEEV++  NPFQ+LISGA WLVR+G N+VEASAR+GHLD+L                           G  LDD+L AKLARTA+GHD+EGRLIL+Q  G AAGSD D A+ DGLDL+ELAD+LV+AGAVNAINLVGG P+AM            D  +  GF   S      PRCE+PVSSIVCVHL+PP  +  G+   +  PS +  P +     XXX                        EE R  W  E+C  NGT N+T LW HLD VEE+V RYK
Sbjct:   39 MVSFGVRGDSFVVGTITAEEVLDEHNPFQNLISGAGWLVRAGVNHVEASARDGHLDVLLDDDXXXXXXXXXXXXXXXXXXXXXXEGGALDDLLVAKLARTAIGHDSEGRLILLQ--GKAAGSDQDTAIPDGLDLSELADMLVEAGAVNAINLVGGAPSAMMEEW--------DSGSYGGFTDGSAL----PRCEIPVSSIVCVHLDPPPLIE-GAEGVDSTPSPSLQPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDNTEEVRLQWTRELCGANGTGNATSLWEHLDSVEESVLRYK 323
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A7S0B5F9_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B5F9_9DINO)

HSP 1 Score: 110 bits (276), Expect = 2.430e-25
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1 
Query:  178 VNFGVRAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVHLEPPLFVPVGSAAENG 792
            VNFG+R GKF +G  T EE+      F+  +SG  WLVR G +YV+   +E ++ +   G              D       +RTA+G D +GRLI++Q  G+ A  D     + GL++ +LAD+L+D GAV+AINL GGG +AM R+   I  P+ D   P      S  +    +CE PVSSI+C+H  P L     + A +G
Sbjct:    4 VNFGIRDGKFAIGYFTPEELQG----FEQAVSGVTWLVRDGKSYVQQGWKEANITVQTSG--------------DKYATNLASRTAVGVDKDGRLIIIQIDGSIAVGDK----KRGLNMLQLADLLIDNGAVHAINLDGGGSSAMARDGILINYPS-DMRPP------SCDASGKHQCERPVSSILCIHELPELEPEQDAGASSG 179
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A7S0A625_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A625_9DINO)

HSP 1 Score: 108 bits (271), Expect = 1.800e-23
Identity = 77/205 (37.56%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:  178 VNFGVRAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVHLEPPLFV-PVGSAAEN 789
            VNFG+R GKFV+G  T EE+      F+ ++SG  WLVR G +YV+   RE +  +   G              D       +RTA+G D +GRLI++Q  G+ A       L+ GL++ +LAD+L++ GAV+AINL GGG +AM R+   I  P+ D   P      S  +    +CE PVS+I+CVH  P +   PVG  +++
Sbjct:  103 VNFGIRDGKFVIGYFTPEELQG----FEQVVSGVTWLVRDGKSYVQQGWREANTTVQTSG--------------DKYATNLASRTAVGVDKDGRLIILQIDGSIAVGH----LKRGLNMFQLADLLIENGAVHAINLDGGGSSAMARDGVLINYPS-DMRPP------SCDASGKHQCERPVSTILCVHELPEVEERPVGQTSDS 278
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A7S0A5Y7_9DINO (Hypothetical protein n=4 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A5Y7_9DINO)

HSP 1 Score: 108 bits (271), Expect = 5.570e-23
Identity = 77/205 (37.56%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:  178 VNFGVRAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVHLEPPLFV-PVGSAAEN 789
            VNFG+R GKFV+G  T EE+      F+ ++SG  WLVR G +YV+   RE +  +   G              D       +RTA+G D +GRLI++Q  G+ A       L+ GL++ +LAD+L++ GAV+AINL GGG +AM R+   I  P+ D   P      S  +    +CE PVS+I+CVH  P +   PVG  +++
Sbjct:  188 VNFGIRDGKFVIGYFTPEELQG----FEQVVSGVTWLVRDGKSYVQQGWREANTTVQTSG--------------DKYATNLASRTAVGVDKDGRLIILQIDGSIAVGH----LKRGLNMFQLADLLIENGAVHAINLDGGGSSAMARDGVLINYPS-DMRPP------SCDASGKHQCERPVSTILCVHELPEVEERPVGQTSDS 363
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A7R9Y9H0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9H0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.700e-23
Identity = 80/224 (35.71%), Postives = 112/224 (50.00%), Query Frame = 1 
Query:  127 FDKSSSGSIALLRSLGLV---------NFGV-RAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVH-LEPPLFV 765
            FD  +S  +  + S G+V         +FG+ + G FV G V AEE+ E    F +L+SG  WLVR    YVE S       ++   W G  E  +        +  K ARTA+GHDAEG L+++Q  G             G+DL E+A ++++ G  N INL GGG A MT+NHS + +P+  C          G      RCE  VS++ C+H + PPLFV
Sbjct:  121 FDTHTSACLGHVVSEGVVVQTTTQKSASFGLTKDGDFVTGYV-AEEMAE---DFHELVSGVIWLVREHREYVENS-------VVEHEWMGGQE-TSQANNPSRFINVKSARTAIGHDAEGNLLVLQMDGKTDAY--------GVDLREMASIMIELGFKNGINLDGGGSATMTQNHSLVSEPSWACD---------GDKSEYFRCEKEVSTVTCMHGMAPPLFV 315
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BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: B3RIP6_TRIAD (EGF-like domain-containing protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RIP6_TRIAD)

HSP 1 Score: 103 bits (258), Expect = 1.310e-21
Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 1 
Query:  139 SSGSIALLRSLGLVNFGVRA-GKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVH 744
            S+G +  L ++  VNFG+R  G  +VG +T EE+++  NPF  L+SG  WLVR+G +YV+ S +           S K E       L   +  K ARTA+GHD  G ++L+Q  G             GL+L + A  L+ +G VNAINL GGG +    +   +  P+  C++   F           RC  PVS+++C H
Sbjct:   70 SNGRLVRLTNVQNVNFGIRKNGSIIVGYLTEEEILDKENPFVQLVSGVIWLVRNGKSYVKESMKME---------SNKHEETGT---LKQFIEVKSARTAIGHDRNGNVMLMQIEGQTNAR--------GLNLYDFAKKLIKSGFVNAINLDGGGSSTTAIDGIAVGYPSDHCASNPAF-----------RCARPVSTVICAH 241
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BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: UPI0016043331 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016043331)

HSP 1 Score: 103 bits (258), Expect = 1.310e-21
Identity = 69/189 (36.51%), Postives = 93/189 (49.21%), Query Frame = 1 
Query:  181 NFGVRA-GKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVH 744
            NFG+R  G  VVG ++ ++V+   NPF  L+SG  WLVR+   YV  S      DI   G             LD  +    ARTA+GHD EGR++LV   G             G++L E AD L+  G VNA+NL GGG A M  N + +  P+  C++ + F           RC   VS+I+CVH
Sbjct:  155 NFGIRKDGTIVVGYLSEQDVLREDNPFVQLVSGVIWLVRNATVYVNESRTTECADIQETGT------------LDRFVNVVSARTAVGHDEEGRVVLVHIEGQTGDR--------GVNLWEFADYLLSLGLVNAVNLDGGGSATMVINGTVVNYPSDRCADDRAF-----------RCARAVSTILCVH 312
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A7S1XQ44_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQ44_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.320e-21
Identity = 73/200 (36.50%), Postives = 107/200 (53.50%), Query Frame = 1 
Query:  181 NFGV-RAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSP---RCEVPVSSIVCVHLEP-PLFV 765
            +FG+ + G  V G + AE+V      + +L+SGA WLVR+  ++V+ S      D  +    G+  G       DD +  + ARTA+GHDAEG ++++Q  G +           G+DL ELAD++VD G  N INLVGGG + M  + S + +P+  C        D G++  S     CE PVS+I CVH  P P+FV
Sbjct:  191 SFGITKDGDLVTGYIPAEDV----GNYHELVSGAVWLVRNYEDFVDNSK-----DTAKDWLDGQERGPH-----DDFVTQRNARTAIGHDAEGNVLILQIDGMSG--------LYGMDLYELADIMVDLGFENGINLVGGGYSTMLEHGSLVSEPSNKC--------DPGATSASHPHFNCEKPVSTITCVHGSPLPIFV 360
[Close]
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Match: A0A7S0B505_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B505_9DINO)

HSP 1 Score: 100 bits (249), Expect = 3.040e-21
Identity = 70/189 (37.04%), Postives = 100/189 (52.91%), Query Frame = 1 
Query:  178 VNFGVRAGKFVVGMVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSGKPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAALQDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQGFVSDSGSSGVSPRCEVPVSSIVCVH 744
            VNFG+R GKF +G  T EE+      F+  +SG  WLVR G +YV+   +E ++ +   G              D       +RTA+G D  GRLI++Q  G+ A      A++ GL++ +LA +L+D GAV AINL GGG +AM R+   I  P+ D   P      S  +    +CE  VS+I+CVH
Sbjct:    4 VNFGIRDGKFAIGYFTPEELQG----FEQAVSGVTWLVRDGKSYVQQGWKEANITVQTSG--------------DKYATNLASRTAVGVDKGGRLIILQIDGSIAVG----AMKRGLNMFQLAQLLIDNGAVQAINLDGGGSSAMARDGILINYPS-DMRPP------SCDASGKHQCERTVSTILCVH 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15769.3344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI16_ECTSI3.030e-7351.78NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KPM3_9PHAE1.460e-6548.67NAGPA domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S0B5F9_9DINO2.430e-2537.07Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]
A0A7S0A625_9DINO1.800e-2337.56Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]
A0A7S0A5Y7_9DINO5.570e-2337.56Hypothetical protein n=4 Tax=Pyrodinium bahamense ... [more]
A0A7R9Y9H0_9STRA7.700e-2335.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B3RIP6_TRIAD1.310e-2133.99EGF-like domain-containing protein (Fragment) n=1 ... [more]
UPI00160433311.310e-2136.51N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
A0A7S1XQ44_9STRA2.320e-2136.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0B505_9DINO3.040e-2137.04Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15769contigH-paniculata_contig15769:980..5721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.5
Seed ortholog evalue4.6e-61
Seed eggNOG ortholog2880.D8LI16
Preferred nameNAGPA
KEGG koko:K01125
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0003674,GO:0003824,GO:0003944,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006464,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0015929,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0016798,GO:0019538,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0033299,GO:0033365,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:1901564
EggNOG free text desc.N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
EggNOG OGs28JJ0@1,2QRY5@2759
EC3.1.4.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size1035
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15769.3344.1prot_H-paniculata_contig15769.3344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15769 980..3722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929257.0282526-CDS-H-paniculata_contig15769:979..11871622929257.0282526-CDS-H-paniculata_contig15769:979..1187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15769 980..1187 -
1691480790.361721-CDS-H-paniculata_contig15769:979..11871691480790.361721-CDS-H-paniculata_contig15769:979..1187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15769 980..1187 -
1622929257.0431561-CDS-H-paniculata_contig15769:1238..15911622929257.0431561-CDS-H-paniculata_contig15769:1238..1591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15769 1239..1591 -
1691480790.3775668-CDS-H-paniculata_contig15769:1238..15911691480790.3775668-CDS-H-paniculata_contig15769:1238..1591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15769 1239..1591 -
1622929257.0587056-CDS-H-paniculata_contig15769:3464..37221622929257.0587056-CDS-H-paniculata_contig15769:3464..3722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15769 3465..3722 -
1691480790.3869834-CDS-H-paniculata_contig15769:3464..37221691480790.3869834-CDS-H-paniculata_contig15769:3464..3722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15769 3465..3722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929257.0744355-UTR-H-paniculata_contig15769:3722..37661622929257.0744355-UTR-H-paniculata_contig15769:3722..3766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15769 3723..3766 -
1691480790.394868-UTR-H-paniculata_contig15769:3722..37661691480790.394868-UTR-H-paniculata_contig15769:3722..3766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15769 3723..3766 -
1622929257.0858853-UTR-H-paniculata_contig15769:3952..40641622929257.0858853-UTR-H-paniculata_contig15769:3952..4064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15769 3953..4064 -
1691480790.4088724-UTR-H-paniculata_contig15769:3952..40641691480790.4088724-UTR-H-paniculata_contig15769:3952..4064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15769 3953..4064 -
1622929257.1007864-UTR-H-paniculata_contig15769:5661..57211622929257.1007864-UTR-H-paniculata_contig15769:5661..5721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15769 5662..5721 -
1691480790.4167635-UTR-H-paniculata_contig15769:5661..57211691480790.4167635-UTR-H-paniculata_contig15769:5661..5721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15769 5662..5721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15769.3344.1

>prot_H-paniculata_contig15769.3344.1 ID=prot_H-paniculata_contig15769.3344.1|Name=mRNA_H-paniculata_contig15769.3344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MVTAEEVMEVSNPFQDLISGARWLVRSGANYVEASAREGHLDILRPGWSG
KPEGEAVGQGLDDVLRAKLARTALGHDAEGRLILVQTTGAAAGSDPDAAL
QDGLDLNELADVLVDAGAVNAINLVGGGPAAMTRNHSTIVDPTGDCSNPQ
GFVSDSGSSGVSPRCEVPVSSIVCVHLEPPLFVPVGSAAENGDPSGNGFP
ATSSSSSSSSAWPSTGRGGTSESSWGDDNGSREKEEERAYWVEEMCATNG
TENSTLWAHLDDVEEAVWRYKV*
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mRNA from alignment at H-paniculata_contig15769:980..5721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15769.3344.1 ID=mRNA_H-paniculata_contig15769.3344.1|Name=mRNA_H-paniculata_contig15769.3344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4742bp|location=Sequence derived from alignment at H-paniculata_contig15769:980..5721- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGTGTCGGTCATCTAGTTGCTGGGGGTGACGTGCTCCGCGCGGACAAT
GATTCCGCTGGTGAGTTGAAAGCGAAGGGGCGAGGGGAGGGGGGGACACG
TGGGCACATCACAGAAATGGAATGCCTCATTCAGTCGCACAAGTTTCATC
GACAAGGTCAACCCTACTTGCCACAGTTCGCAGCTCTATACTGATACAAC
AACTTCATCGTAACTCCTGTTACGGTATTCCAACTGACCCACCTCACTTG
TATGTAAGTACGCCTACAAGAAAAATTAGAAATTGGTGGATGGAAGGGGG
TCACCTTACTATGTTGAAAAAATCATTACACGCTCTCAATTCTTCAGAGA
GGGTCGGATGCAACGTAGCCAGCCATCCACTCTACTCCTAGAAGTGAGTC
ATGACGACCCCTGTGTAAACAACAGGGTACAGTACTCCCTACCGTATGCT
TTTACCCCTGTTGTCAAAGCGCCGGAAGATAGTAATGGAGGCTTCGGAGC
AATTGTTGAATTATGTAGTCAAGCGACTTCTGAAAACGAAATCTTGACGG
ATGCGGTGCCTACATATCTTCGTAAGTGCAGCGCACCGTTGGGCTTGGAT
CGAGGAGGAAAGATGGACTGTACGTGCTAGCGTAATCGTGGCTCTATCTC
CTGTTTATTTTAGTTATAGGCTGGTCTTGCGAAGAACCGTAAGATTTCTT
TTCTCGAAGTTCGAAATGAAAGTACCACAAGCCATATATCGGATTGAATC
TAATGACAAAACAAAGGCAACAATGTGGCGCACTTAATGCTACGAGCCGT
GGTTCCTCGGCAGACTGGAGATTGTCGCATGTAACTACTAGTATGTCATG
TAGTTACTATGCACCAGAGTGGAGGTGCGGTTTTCGACTCCTTTTCGCTG
ATTGTTGTGAAGTCGTAGCTGATGTTGTGATAAATATGGTAAGGAGCAAC
GCAAAAAAAAAGGCATATTTTCCTCATTCCGGTATCGGTCGTGTATCTCG
AGAAATTCGGCAAGAAAGGGCACTGGAGGATGACCTATTTGAGCCCAAAA
TCCGTTTTTGCCGGAATTCTCGTGATACAGGACCGTTTTTAAAGAGGGAA
AAAAGTGTTCATTTTTGTATAGCCATTTACTACAGTTGTGCAAAATTTCA
ACTTCTATTTCATTAAACAGTTGAAAAAGTGTCCGGGCGATTTTTCACGG
TTCTTCCTGCGACCAGCGTGTAATTTAACACTCATTCCGATTTAGCACGC
TTAGGAGCTGAAGTACTGAGCTTGTAGATGGACCTTTCTGCGTACATATA
GTATTAGGCACACGTAATGCATTTTTTTTTTTTCAAGTCAATGCTGTGTG
TTTATTTTATTCAACCTTTATCGACCGAATGTACAGTAATGTCCTTGATG
GTCACTTGGTTTGGCTTGGCTTAGCTTTACAAAAGTTGACTTTGTACTGT
AGAAAGATGGCATGTTCGCTGTTTCCGTCTCGGCAACAAAGTAGAACAAA
CCAGGTTAGGAGTAGCATCGGCAACGGTGGGGTGGTATTGTACAACACGT
TGTTCACGATATATGAAAATGCAGGACTCCCCCCCCCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCCCTGGGTGTGTTGTTTGAATTGTGTTCCATGACTA
TATATAGCCGTAAGGTAAGAGCTGGCTGGATGACCTCATCCTAAGATGAG
CTTGTTCTGGAGATGATGAAGATTTTGACAAATCGTCGAGTGGATCGATT
GCTCTGCTGAGATCCCTGGGTGAGCATATGTGTATTTTTGTGAGTGCCCA
TTGCTACCTCCTCCCCCCTCCCCCGCGCCCTAGCAATATAATTTGCTGAC
AAGGGAGAACAACTGAAGTTCAAAGTTAACCTCAATACGGGTACAGTGCC
CTCTCTCCCCCTTACAAAACCAACACTAGGACTCAACCATTTTTTAATTT
TCCAGGTCTCGTGAACTTCGGCGTTCGCGCGGGCAAGTTTGTGGTTGGCA
TGGTCACCGCGGAGGAGGTGATGGAGGTCTCCAACCCTTTCCAGGATCTC
ATCTCTGGCGCCAGGTGGCTGGTGCGGTCGGGAGCCAACTACGTGGAGGC
TTCTGCCAGGGAGGGGCACCTGGACATTCTGCGGCCCGGCTGGAGCGGCA
AGCCGGAAGGAGAAGCGGTCGGGCAAGGGTTGGACGATGTGCTCAGGGCG
AAGTTGGCGAGGACTGCGTTGGGGCACGATGCGGAGGGGCGTTTAATTCT
TGTGCAGGTGAATTGAAGAGAGTTGTTATTTGCGGTGTGCAGGCTGTCGT
TGGTTGTCGAACCGTTGACCAGACTTCATTGAAAGGACGGAGTGGGGGGA
GGGAGCTGTGTGTGAGTATGAAATGAATTTCACGTGAACGTGTGGCGGAA
ATGAAGTAATACTCGCCCACTCACTCATCCACCACAAACCTATTTCACGA
TTCAATCCTACAGTTACTTGTCACAGTTAGTAAATCTAAAACGCTCATGC
AATAACTCTATCGTGCCCATGTTGAGGTCATGCCCCGGACCTAAATCGCA
GTGTCTGTACTCTAATCAACACCCAAAATCAAATTAGGTAGACTGAATAT
AAACGGGGGAGTGTTTCTGGCAAGGAGTATGACTAATCCATCAAGTCCAT
GCCAAAAAAAATTCTCTCCAACTATCAAGTCCACGCGCTTTGTCAACGCA
TTTAGGCCCAGATAGGTGTGGGTTGCGACTAGGGTTAGTATTAGTAATAT
AGTGGTTTTGCACGTGATCTGCCAACGCGGTCAGGTCAGATAGAGCTTTG
CCAGTGCCACTAGGCGAGATGAAACAGCGTGGTACGTGAGCGTTTTCGGT
TTTCTCGATTGTGAGACAAAGTAGAACCGCCTATGGAGGGGTGATTTCTA
ATGGTAGCTTTCAAAACTCCCATGAAACGTTCTCGGGTCGGCCAGGAAAA
TGTACAGAAAAAGAGCAAGTGACGCCCGTAGACCAAAAAAAGGGGTAAGC
ACAACTTTTTCGGAAAGGAAATGCTGCACGTTCACCACTTGCGGCTAATC
CATATGAATCTGGTGTTGCGATAGAAGCACCCAATACGAAGCGAGCAAAA
TGCACGGTGATTACAACTTCTTCCCGTGGCAAAAGGGTCTCGGGGAATTT
TGGAGTATTCTGGACCTCCTTGATTGAGAACAGGGTGTTAGAGGTGGTCG
AGCCCACACACTAGGGGTGCCCCGCAGTGCCCTTGCGTGGTGTCTTGAAA
TGGCCCGAAAGTGCCAACGAGGTTTATACCTTACGCACGATTAGTCAATT
CAAATTTCTGATCGGGGCCAAATGTTTCTTCTTGTCACGGGCAATTCGGC
TTCTCACTCCAAAGGATTCACTGGAGATTCACCTGCAAAGTTATTCCGAA
AAGAGCCACTCGAAAACCTTTTTTTTTATTCACGTTTGCGATGTATGTTC
ACTTGATCAACTGACCAGCGTACCGCATGGTTGATTTGACACTTGGCTGT
AAATGATGACCAGCTTTGCGGTCAACGGGTCAAATTACTTTCGATCAATC
GTTTCTGTTGGCCCCCTATTGGTCATGATATAATTTCGCCGATGAATGTA
TAAAACTGAAGTTTGGAGTCAGCTGTGTAACCTCAACATGGGTACTGTGG
AGTTATGAAATGAGGTTTTAGAGTTACAGTTCAACTGATCGACAGGTTCA
ATTTACTACGTACAGCAATGGTATTTTCAGTTAATGGAAGGAAGGATTAT
TGCATGGCGTCAGTCGTTCATGTGAGGACTATTTCATGTTTCACCTGCAG
TACCCGTACGAGTGATGCAGTGATATTCCCTTGTGAAGAGTGTCATAGTC
CATGTTGTGCGTGGTCAAAGCGGGAAACGTTCCTGGGGTCAGAAGTTTTG
TCGACCTTGTCGGTCTATCAATCTGAAAATTCAAACAATCTTCGAGTCCT
TCAGAATCCCATTTCACTTGGTTAGCACACGTGGGTGGGACTGGATGATT
TTTAGGCGTGATGATGAAGGAGTAAACACTTGTTCATGGACAACTCGTTT
AGCGTCATGCCCCCTCCCAATTTTATTGACAAGAACCAAACTAACAGAAA
ACAAACCTCGCATGCGTTTGCTTCTCGAAGACCACTGGAGCCGCCGCAGG
ATCAGACCCTGATGCCGCACTCCAAGACGGGTTAGATCTTAATGAGCTCG
CGGACGTCCTCGTTGATGCCGGTGCCGTAAACGCGATAAACCTGGTGGGC
GGTGGCCCAGCCGCCATGACCCGGAACCACAGCACCATCGTAGACCCCAC
GGGAGACTGTTCGAACCCGCAGGGCTTCGTGAGTGATAGTGGGTCGTCTG
GGGTGTCCCCACGCTGCGAGGTGCCAGTGTCTAGCATTGTGTGTGTGCAC
CTCGAACCGCCTCTGTTCGTACCCGTCGGGTCTGCCGCGGAAAATGGGGA
TCCGAGTGGGAACGGGTTCCCTGCGACTTCCTCGTCCTCCTCTAAGACGG
GAAGCAACCTGTATGGAGGAAGAGGAGGTGACAGCAGCAGCAGCAGCAGC
AGCGCGTGGCCGTCCACTGGTAGAGGGGGCACAAGTGAAAGCTCCTGGGG
CGATGACAATGGCAGCAGAGAGAAAGAGGAGGAGCGAGCGTACTGGGTGG
AGGAGATGTGCGCGACTAACGGGACGGAGAATAGCACGCTGTGGGCGCAT
CTTGATGATGTAGAGGAAGCCGTCTGGAGATACAAGGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15769:980..5721-

>mRNA_H-paniculata_contig15769.3344.1 ID=mRNA_H-paniculata_contig15769.3344.1|Name=mRNA_H-paniculata_contig15769.3344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig15769:980..5721- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCACCGCGGAGGAGGTGATGGAGGTCTCCAACCCTTTCCAGGATCT
CATCTCTGGCGCCAGGTGGCTGGTGCGGTCGGGAGCCAACTACGTGGAGG
CTTCTGCCAGGGAGGGGCACCTGGACATTCTGCGGCCCGGCTGGAGCGGC
AAGCCGGAAGGAGAAGCGGTCGGGCAAGGGTTGGACGATGTGCTCAGGGC
GAAGTTGGCGAGGACTGCGTTGGGGCACGATGCGGAGGGGCGTTTAATTC
TTGTGCAGATGGTCACCGCGGAGGAGGTGATGGAGGTCTCCAACCCTTTC
CAGGATCTCATCTCTGGCGCCAGGTGGCTGGTGCGGTCGGGAGCCAACTA
CGTGGAGGCTTCTGCCAGGGAGGGGCACCTGGACATTCTGCGGCCCGGCT
GGAGCGGCAAGCCGGAAGGAGAAGCGGTCGGGCAAGGGTTGGACGATGTG
CTCAGGGCGAAGTTGGCGAGGACTGCGTTGGGGCACGATGCGGAGGGGCG
TTTAATTCTTGTGCAGACCACTGGAGCCGCCGCAGGATCAGACCCTGATG
CCGCACTCCAAGACGGGTTAGATCTTAATGAGCTCGCGGACGTCCTCGTT
GATGCCGGTGCCGTAAACGCGATAAACCTGGTGGGCGGTGGCCCAGCCGC
CATGACCCGGAACCACAGCACCATCGTAGACCCCACGGGAGACTGTTCGA
ACCCGCAGGGCTTCGTGAGTGATAGTGGGTCGTCTGGGGTGTCCCCACGC
TGCGAGGTGCCAGTGTCTAGCATTGTGTGTGTGCACCTCGAACCGCCTCT
GTTCGTACCCGTCGGGTCTGCCGCGGAAAATGGGGATCCGAGTGGGAACG
GGTTCCCTGCGACTTCCTCACCACTGGAGCCGCCGCAGGATCAGACCCTG
ATGCCGCACTCCAAGACGGGTTAGATCTTAATGAGCTCGCGGACGTCCTC
GTTGATGCCGGTGCCGTAAACGCGATAAACCTGGTGGGCGGTGGCCCAGC
CGCCATGACCCGGAACCACAGCACCATCGTAGACCCCACGGGAGACTGTT
CGAACCCGCAGGGCTTCGTGAGTGATAGTGGGTCGTCTGGGGTGTCCCCA
CGCTGCGAGGTGCCAGTGTCTAGCATTGTGTGTGTGCACCTCGAACCGCC
TCTGTTCGTACCCGTCGGGTCTGCCGCGGAAAATGGGGATCCGAGTGGGA
ACGGGTTCCCTGCGACTTCCTCCAGCAGCAGCAGCAGCAGCGCGTGGCCG
TCCACTGGTAGAGGGGGCACAAGTGAAAGCTCCTGGGGCGATGACAATGG
CAGCAGAGAGAAAGAGGAGGAGCGAGCGTACTGGGTGGAGGAGATGTGCG
CGACTAACGGGACGGAGAATAGCACGCTGTGGGCGCATCTTGATGATGTA
GAGGAAGCCGTCTGGAGATACAAGGTGTGACAGCAGCAGCAGCAGCAGCG
CGTGGCCGTCCACTGGTAGAGGGGGCACAAGTGAAAGCTCCTGGGGCGAT
GACAATGGCAGCAGAGAGAAAGAGGAGGAGCGAGCGTACTGGGTGGAGGA
GATGTGCGCGACTAACGGGACGGAGAATAGCACGCTGTGGGCGCATCTTG
ATGATGTAGAGGAAGCCGTCTGGAGATACAAGGTGTGA
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