mRNA_H-paniculata_contig15768.3343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 5.360e-14 Identity = 53/156 (33.97%), Postives = 75/156 (48.08%), Query Frame = 1
Query: 163 DDAVLTEAGERTTVTAFSNVYDEKT-LAAG--GCDPDGCTADLARDS--DTSPSSRWSCRHSLA--NTPCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
++A EAG +TTV + YD++ +AG GC GC DLA D + SRWSC + CE+SF F PQ+I + ++AF+KGDERTR V G E++ F F + + H V + + DW S+ EV
Sbjct: 247 NNAEFVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYP------GSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEV 396
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-11 Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 1
Query: 163 DDAVLTEAGERTTVTAFSNVYDEKT------LAAGGCDPDGCTADLARDS-DTSPSSRWSCRHSLANT--PCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
DDAV E G +T V+ + +D + + G +GC A+ ARD T SRWSC L + PC++ F F +PQNIV+ ++AF+KG+ER R V + +G + TH S +S F + +++ + V++ +W S+ EV
Sbjct: 151 DDAV--EVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEV----YVNG-ELTHTHESYADST-FNTLGVTANEANTVMLESVSLLSNEWISLIEV 300
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 1.750e-9 Identity = 39/119 (32.77%), Postives = 55/119 (46.22%), Query Frame = 1
Query: 265 GCTADLARDS--DTSPSSRWSCRHSLA--NTPCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
GC DLA D + SRWSC + CE++F F PQ+I + ++AF+KGDERTR V G E++ F F + + H V + + DW S+ EV
Sbjct: 2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYP------GSTFNSFGIQENGVHTVAMESVGIDADDWISLLEV 114
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 2.260e-9 Identity = 48/158 (30.38%), Postives = 77/158 (48.73%), Query Frame = 1
Query: 166 DAVLTEAGERTTVTAFSNVYDEKT------LAAGGCDPDGCTADLARDSDTSPS-SRWSCRHSLA--NTPCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGT-QETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
DAV E G +T V+ + +D + + G +GCT RD ++ + SRWSC + PC++ + FG+PQ+I + ++AF+KGDER R V + DGT THE +G F + + V++ + +W S+ EV
Sbjct: 71 DAV--EVGTKTDVSVSATAHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNEAESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEV----YFDGTLYRTHESYAGST---FNPLGVSATGISSVMLESVDLLENEWISLIEV 219
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 2.600e-9 Identity = 48/156 (30.77%), Postives = 74/156 (47.44%), Query Frame = 1
Query: 169 AVLTEAGERTTVTAFSNVYDEKT------LAAGGCDPDGCTADLARDSDTSP-SSRWSCRHSLA--NTPCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
A+ E G T V + +D + + G DGC A A D S SRWSC L PC++ F F DPQ+IV+ ++AF++G+ERTR + + DG + TH S +S F + + + V++ + +W S+ EV
Sbjct: 154 AIAYEVGTMTEVNVSATAHDTRPGSSSGDVGCGETGGDGCAAIKAHDGIISEIESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDI----FIDG-ELTHTHESYADST-FNTLGVTATEASTVMLESVDLLSDEWISLLEV 303
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 2.470e-8 Identity = 49/149 (32.89%), Postives = 72/149 (48.32%), Query Frame = 1
Query: 181 EAGERTTVTAFSNVYDEKTLAAGGCDPDG---CTADLARDSDTSP-SSRWSCRHSLANT--PCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
E G +T V S +D + GC G CTA RD S SRWSC L + PC++ F F +PQ IV+ ++AF+KG+ERTR V + +G + TH S ++ F + + D V++ +W S+ EV
Sbjct: 90 EVGTKTEVGVSSTAHDVRP-GDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV----YING-EMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEV 231
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 6.120e-8 Identity = 49/149 (32.89%), Postives = 72/149 (48.32%), Query Frame = 1
Query: 181 EAGERTTVTAFSNVYDEKTLAAGGCDPDG---CTADLARDSDTSP-SSRWSCRHSLANT--PCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
E G +T V S +D + GC G CTA RD S SRWSC L + PC++ F F +PQ IV+ ++AF+KG+ERTR V + +G + TH S ++ F + + D V++ +W S+ EV
Sbjct: 341 EVGTKTEVGVSSTAHDVRP-GDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV----YING-EMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEV 482
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 8.450e-8 Identity = 47/152 (30.92%), Postives = 71/152 (46.71%), Query Frame = 1
Query: 181 EAGERTTVTAFSNVYDEKT-LAAG--GCDPDG---CTADLARDSDTSP-SSRWSCRHSLANT--PCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTVTTVSWTDGTQETHEFISGGESLGFEVFPLDSDDTHMVIVTPAEPNFYDWFSITEV 609
E G +T V S +D + +++G GC G CTA RD S SRWSC L + PC++ F F +PQ I++ ++AF+KG+ERTR V T E++ F + + D V++ +W S+ EV
Sbjct: 364 EVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYA------DATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 509
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 2.360e-7 Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1
Query: 181 EAGERTTVTAFSNVYDEKTLAAGGCDPDG---CTADLARDSDTSP-SSRWSCRHSLANT--PCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTV 444
E G +T V S +D + GC G CTA RD S SRWSC L + PC++ F F +PQ IV+ ++AF+KG+ERTR V
Sbjct: 102 EVGTKTEVGVSSTAHDVRP-GDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 194
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 5.020e-7 Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 265 GCTADLARDSDTSP-SSRWSCRHSLA--NTPCEMSFEFGDPQNIVEFEMAFYKGDERTRAFTV--------TTVSWTDGTQET 480
GCTA RD S SRWSC L PC++ F F +PQ+IV+ ++AF+KG++RTR V T S+TD T T
Sbjct: 56 GCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNT 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15768.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15768.3343.1 >prot_H-paniculata_contig15768.3343.1 ID=prot_H-paniculata_contig15768.3343.1|Name=mRNA_H-paniculata_contig15768.3343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp TLSGHPDLQCLPATSAPEVNLDSEEVRNGTCECTEVAVCDPFLVCSAGSEback to top mRNA from alignment at H-paniculata_contig15768:2924..4137+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15768.3343.1 ID=mRNA_H-paniculata_contig15768.3343.1|Name=mRNA_H-paniculata_contig15768.3343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1214bp|location=Sequence derived from alignment at H-paniculata_contig15768:2924..4137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15768:2924..4137+ >mRNA_H-paniculata_contig15768.3343.1 ID=mRNA_H-paniculata_contig15768.3343.1|Name=mRNA_H-paniculata_contig15768.3343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig15768:2924..4137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |