prot_H-paniculata_contig15766.3342.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig15766.3342.1
Unique Nameprot_H-paniculata_contig15766.3342.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length141
Homology
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BLAST of mRNA_H-paniculata_contig15766.3342.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.930e-8
Identity = 43/134 (32.09%), Postives = 64/134 (47.76%), Query Frame = 0 
Query:    5 GLSIPIEGIAGADEQWLGEVFPSIMEDAAETVMDKACSAGEERLDEVRATGENLEQSTVADGQCVGSSNVSPLAVPRKSMETLEQLVQDRSLEGHKRSSPTHRFFRFENTMQLVDKAGKGEDWSWVRNKNVGAF 138
            GL+IP            G       E++  + ++   S   ERLD  RA G  L Q   A G   G     P  V   + ETL+++++   ++G +  SP   F  F+  M LVD+ G+GE+W+WVR KN+  F
Sbjct: 1122 GLAIPEVDFEATLGTVAGGALSKFAEESLNSGIESVASIAGERLDGGRAEG--LPQGAGAHGAQQGW----PSPVQGFTYETLKEVIKSFEVDGMRGRSP---FPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15766.3342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU35_ECTSI1.930e-832.09LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15766contigH-paniculata_contig15766:2234..2879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15766.3342.1mRNA_H-paniculata_contig15766.3342.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig15766 288..3027 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig15766.3342.1 ID=prot_H-paniculata_contig15766.3342.1|Name=mRNA_H-paniculata_contig15766.3342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MSFAGLSIPIEGIAGADEQWLGEVFPSIMEDAAETVMDKACSAGEERLDE
VRATGENLEQSTVADGQCVGSSNVSPLAVPRKSMETLEQLVQDRSLEGHK
RSSPTHRFFRFENTMQLVDKAGKGEDWSWVRNKNVGAFTA*
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