mRNA_H-paniculata_contig15766.3342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15766.3342.1
Unique NamemRNA_H-paniculata_contig15766.3342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15766.3342.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.730e-19
Identity = 68/187 (36.36%), Postives = 95/187 (50.80%), Query Frame = 2 
Query:    2 RLFFLCGHDNSLAECGLEGKGYRVEIPRTWVKKALPFAKALLVVLKITLMSFAGLSIPIEGIAGADEQWLGEVFPSIMEDAAETVMDKACSAGEERLDEVRATGENLEQSTVADGQCVGSSNVSPLAVPRKSMETLEQLVQDRSLEGHKRSSPTHRFFRFENTMQLVDKAGKGEDWSWVRNKNVGAF 562
            R+FFLC +D SLAECG  G+GY V     W KKA+PFA+    +  I L    GL+IP            G       E++  + ++   S   ERLD  RA G  L Q   A G   G     P  V   + ETL+++++   ++G +  SP   F  F+  M LVD+ G+GE+W+WVR KN+  F
Sbjct: 1069 RVFFLCPYDRSLAECGPGGQGYEVTELLGWAKKAMPFAEVGRALASIALRVCIGLAIPEVDFEATLGTVAGGALSKFAEESLNSGIESVASIAGERLDGGRAEG--LPQGAGAHGAQQGW----PSPVQGFTYETLKEVIKSFEVDGMRGRSP---FPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246
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BLAST of mRNA_H-paniculata_contig15766.3342.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.450e-16
Identity = 63/187 (33.69%), Postives = 97/187 (51.87%), Query Frame = 2 
Query:    2 RLFFLCGHDNSLAECGLEGKGYRVEIPRTWVKKALPFAKALLVVLKITLMSFAGLSIPIEGIAGADEQWLGEVFPSIMEDAAETVMDKACSAGEERLDEVRATGENLEQSTVADGQCVGSSNVSPLAVPRKSMETLEQLVQDRSLEGHKRSSPTHRFFRFENTMQLVDKAGKGEDWSWVRNKNVGAF 562
            RLFFLCG D SLAECG +G+GY V+    WV+KA P AK  L +  I L    GL++  +    A      E   + +EDA    ++   S    RLD ++ +G + E+   A  +  G   + PL       + L+++++  S E  +      R+  F+ TM +VD+ G G +W+WVRN+N+  F
Sbjct:  957 RLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGT--SEDMSAFVEDALSAGIEGTTSKAGNRLDRLQNSGPS-ERLPHAGVRGDGMQTLIPLE--GFDYDKLKEVIK--SFEVDRTQRDGSRYPSFDTTMNIVDRRGHGVEWAWVRNRNIDQF 1136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15766.3342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU35_ECTSI2.730e-1936.36LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI2.450e-1633.69LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15766contigH-paniculata_contig15766:288..3027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2e-07
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2517
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15766.3342.1prot_H-paniculata_contig15766.3342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15766 2234..2879 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.873706-UTR-H-paniculata_contig15766:287..22331622929256.873706-UTR-H-paniculata_contig15766:287..2233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15766 288..2233 -
1691480790.290538-UTR-H-paniculata_contig15766:287..22331691480790.290538-UTR-H-paniculata_contig15766:287..2233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15766 288..2233 -
1622929256.9115832-UTR-H-paniculata_contig15766:2879..30271622929256.9115832-UTR-H-paniculata_contig15766:2879..3027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15766 2880..3027 -
1691480790.3193293-UTR-H-paniculata_contig15766:2879..30271691480790.3193293-UTR-H-paniculata_contig15766:2879..3027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15766 2880..3027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.8871324-CDS-H-paniculata_contig15766:2233..24371622929256.8871324-CDS-H-paniculata_contig15766:2233..2437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15766 2234..2437 -
1691480790.3001409-CDS-H-paniculata_contig15766:2233..24371691480790.3001409-CDS-H-paniculata_contig15766:2233..2437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15766 2234..2437 -
1622929256.8978238-CDS-H-paniculata_contig15766:2660..28791622929256.8978238-CDS-H-paniculata_contig15766:2660..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15766 2661..2879 -
1691480790.3114831-CDS-H-paniculata_contig15766:2660..28791691480790.3114831-CDS-H-paniculata_contig15766:2660..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15766 2661..2879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15766.3342.1

>prot_H-paniculata_contig15766.3342.1 ID=prot_H-paniculata_contig15766.3342.1|Name=mRNA_H-paniculata_contig15766.3342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MSFAGLSIPIEGIAGADEQWLGEVFPSIMEDAAETVMDKACSAGEERLDE
VRATGENLEQSTVADGQCVGSSNVSPLAVPRKSMETLEQLVQDRSLEGHK
RSSPTHRFFRFENTMQLVDKAGKGEDWSWVRNKNVGAFTA*
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mRNA from alignment at H-paniculata_contig15766:288..3027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15766.3342.1 ID=mRNA_H-paniculata_contig15766.3342.1|Name=mRNA_H-paniculata_contig15766.3342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2740bp|location=Sequence derived from alignment at H-paniculata_contig15766:288..3027- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGACTGTTCTTTCTCTGTGGACACGACAACAGCCTTGCAGAATGTGGGC
TTGAAGGAAAGGGATACCGGGTAGAGATTCCGCGAACGTGGGTGAAAAAG
GCCCTCCCGTTCGCCAAGGCCCTACTAGTCGTCCTAAAGATCACGCTGAT
GAGCTTCGCAGGGTTGAGCATTCCCATTGAAGGTATCGCAGGTGCAGATG
AACAATGGTTGGGCGAAGTCTTCCCATCGATAATGGAGGATGCGGCAGAA
ACAGTGATGGACAAAGCTTGCTCCGCTGGGGAAGAGCGCCTCGATGAAGT
ACGTGCGACAGGGGAAAATCTGGAACAGAGCACCGTCGCGGATGGTCAAT
GCGTTGGTAGTTCGAATGTAAGTGGCACTGTGTGCGGTGAGTGTTGCATG
CAGCGATTGCCCATGCAGCGAAACAACTGCTTCCCCCGATACAATAGTGG
TAACTTGACGCACTCGGCAGTAAACCTAACTGCATGTAGGACACATTTCC
ACCACCACACTGTGGAGTCTGAATGCTCCACCTTAACCCAACTACCTTGC
GTCTCCGACCATGACTTCGGTGTAATCAATTCCTCCGTAGGTTAGCCCAT
TGGCCGTGCCGAGGAAATCAATGGAAACGTTGGAGCAACTGGTACAGGAT
CGAAGCCTTGAAGGGCACAAGAGAAGCAGCCCCACCCACCGGTTTTTTCG
CTTTGAAAACACAATGCAATTGGTTGATAAAGCGGGAAAAGGAGAGGATT
GGTCGTGGGTGAGAAATAAGAACGTTGGGGCCTTCACCGCTTAATCTCGA
GAAGTGTAAACAACGGAGTGCTCGCCACGGCAGCGTTGGGTATTCGAGCT
ACGGCGCACTGAAGAGCGATTGGCGGCGAGGTTCTTGCAGGATTGTACCT
TGGCATGCGTACGTCGATCGGGGATACTATTTACTCTTGTCTTTTGGAAG
ACAGAGAGCACTCATTCTAGATGTAGCGGGTACAAGATTTCGCATATACA
TTGTCGTAAAATGGGGTGCGGAGTGGGAAAATATGGACAGGTGGATTGCG
GGCCGAGATACAACGGCTTGAGCTGAGCAGTCGCTTGCGAGAATCATACT
CAAAAGACTTGGCAAATGTGAGTGGAGACTGGTATATGGGCTGCTATGTT
GGGGACAAAAATGGTGAGCAAACTGTATCCAACGTGTATGTACTTGTGGT
GGTGTCGTTGAACGTGCATTATATATCGCTTGCGGATAAAACGATCGGGT
GCGCGTGTCACTAATAGTAGGCAACTAACAAACGCCATGAAGTACATGAC
CCTGATTGGTAGTGTGTGCCGTGGCATCACTTCGAGTGAAAGCAAATTGA
GCGATGCTAGACAGGCGATATTCCGAAGAACGAACAGGGTTGGAGACGGA
AGAAACGCTGTATCCAACATTAGTTGTCATGAGAAAGGCTGCTTTATGTT
CCAACTAGCCCCATCCCCGTTTAGATGTGAGTATCAGTTCTAATACTAAA
TGAACGGTCCTATTTTACATGTGTTTTCTTGGATTTTGATATAGTTGAAT
CGTCCAGCGTATATAGTCAAGACTTTCGGCGCAGTCCTTTGGTGTTGGCG
CCAAGACATGAGTCGTCAGGCAAAAGGTCGTTTACCGCTGGCTCATTCAT
AGATGTGTTCGCTCTCGGGCGAATACCTACGATTGTCCGTTACGAAATAT
ATTGAGACGGGGGAAAAGAATATTTGCTGACTTCCATAACGAAATGGATA
CAGGCAACTGAAGGATGTAGATTTACCCGCTTGCGAGGCCTGTTCTTCCG
CTGAAAGTCTCGCTTCGCCACACCGGTAACCACCAGGACACCTTGCGCTA
CGTTGTCAAACTATGTGTCCATTTTTTTAAGTGGAAAAGGGGTTCGGAGA
CCTCTTTACACGTTGTATGGAGTATTGTGAAGATGCTCCTATACCTTTCT
GTGATATCGTTCACACGTAGATATTGGTTATAGTTATCCTCTACGACTCA
CATTTATTAGCTTCCCCAGTTCTCTTTGAAGCTAAACCCAAACGTTTGCG
TAGCAGTGTTCACCCAGAGGGTGACCACGTTCACGCGGGGACTACAGCTA
TATAGTATAGGTCCTGCGTTAATCGTAGTCATGTGCGTGCTTAAGAGCTT
TTGAATCTTGTCTCAAGGCGTGGAGCGCAGTCATTCCCGGGGCGGGGAGA
GGAAAAGTGTAGAAAGGTGTAGGAAAGCGTACTAATTAAGGAAGGATCCC
GTCCGAATGGTCACCGCCTCTACGTGGCGGACGGGATCAACTAAATTCGG
GGTAATACCCCAACCCTAGACCTAACCCTAACACAACTCACCCCGAGGGA
AACTCCAGGTTGATGGGGTGAGGCCAAGAGCACCCAACGCATAGTCCAAG
ACCGCTGGCAGGCTTAAAGTCGCATAGGTTAGGCAGGTTTTGGCGAACCA
AAAATCACTCGAGAAAGAGTATCAAAACAACTGCGCAATGACTGTTTGAA
TGAGCCCTGTGGAGAAATACTGCAGGGTTTGAGACGGGAGACAAGTCACT
TCTCCTGGGTGGGGAGGTTGTAGTGTTCGACTGCCAGAGCGGGGCGCTCC
GGCAGAAAGAGGGCCCCGAACTTAGGGTTAGGGTTAGGGTATGTGCAATA
AGATAGTTACCTTCGGAGAATCACCAACGGGTGTTCGACCGTGAGCGAGA
ATGCCCCAATACCACCCAGGGCCGAAGCTCGTTCGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15766:288..3027-

>mRNA_H-paniculata_contig15766.3342.1 ID=mRNA_H-paniculata_contig15766.3342.1|Name=mRNA_H-paniculata_contig15766.3342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig15766:288..3027- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTTCGCAGGGTTGAGCATTCCCATTGAAGGTATCGCAGGTGCAGA
TGAACAATGGTTGGGCGAAGTCTTCCCATCGATAATGGAGGATGCGGCAG
AAACAGTGATGGACAAAGCTTGCTCCGCTGGGGAAGAGCGCCTCGATGAA
GTACGTGCGACAGGGGAAAATCTGGAACAGAGCACCGTCGCGGATGGTCA
ATGCGTTGGTAGTTCGAATATGAGCTTCGCAGGGTTGAGCATTCCCATTG
AAGGTATCGCAGGTGCAGATGAACAATGGTTGGGCGAAGTCTTCCCATCG
ATAATGGAGGATGCGGCAGAAACAGTGATGGACAAAGCTTGCTCCGCTGG
GGAAGAGCGCCTCGATGAAGTACGTGCGACAGGGGAAAATCTGGAACAGA
GCACCGTCGCGGATGGTCAATGCGTTGGTAGTTCGAATGTTAGCCCATTG
GCCGTGCCGAGGAAATCAATGGAAACGTTGGAGCAACTGGTACAGGATCG
AAGCCTTGAAGGGCACAAGAGAAGCAGCCCCACCCACCGGTTTTTTCGCT
TTGAAAACACAATGCAATTGGTTGATAAAGCGGGAAAAGGAGAGGATTGG
TCGTGGGTGAGAAATAAGAACGTTGGGGCCTTCACCGCTTAAGTTAGCCC
ATTGGCCGTGCCGAGGAAATCAATGGAAACGTTGGAGCAACTGGTACAGG
ATCGAAGCCTTGAAGGGCACAAGAGAAGCAGCCCCACCCACCGGTTTTTT
CGCTTTGAAAACACAATGCAATTGGTTGATAAAGCGGGAAAAGGAGAGGA
TTGGTCGTGGGTGAGAAATAAGAACGTTGGGGCCTTCACCGCTTAA
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