mRNA_H-paniculata_contig15764.3341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15764.3341.1
Unique NamemRNA_H-paniculata_contig15764.3341.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A2I0AUM6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AUM6_9ASPA)

HSP 1 Score: 82.8 bits (203), Expect = 3.840e-18
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIK 267
            LEL+HTD++GPV   S GGSR+ I F+DD S  +     + KSE   +  +++  V    GL+IK L+SD GGEY  K F+ FCAEN IK
Sbjct:   51 LELIHTDVWGPVSVHSLGGSRYHITFIDDPSCKIWVYFLKNKSEVFSSFKKWKAEVENECGLKIKYLKSDNGGEYDSKEFKIFCAENNIK 140          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA)

HSP 1 Score: 82.4 bits (202), Expect = 4.680e-18
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 LELVHTDIFGPV-DKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
            L+L+HTD+ GP+   SFG  R+ + F+DD+S+ +     ++KSEA     +F+ +  + +G  IK +RSD+GGE+T K F+++C E+GI+ + +
Sbjct:   45 LQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGIRHQLT 138          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP37_CAJCA)

HSP 1 Score: 85.9 bits (211), Expect = 1.490e-17
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
            LEL+HTD+ GP+  +S G S + + F+DD S+       ++KSE      +F+ NV + NGL IK LRSD+GGE+T K F+++C +NGI+++ +
Sbjct:  460 LELIHTDVCGPIKPRSLGKSNYFLFFIDDFSRKTWVYFLKEKSEVFENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLT 553          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A225ULM8_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225ULM8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.780e-17
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGI 264
            L++VH+D+ GP+  KS GG+RFT+IF+DD S+       + KSE L A  +F R+     G  +K +R+D GGEYTGK F  FCA+NGI
Sbjct:  143 LDVVHSDVKGPMTPKSKGGARFTVIFIDDFSRFSFLYFLKAKSEMLKAFEEFRRSAETQTGEILKCIRTDNGGEYTGKRFNLFCAKNGI 231          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A4U0W146_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W146_9BASI)

HSP 1 Score: 84.7 bits (208), Expect = 3.840e-17
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 LELVHTDIFGPVDKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGI 264
            LELVHTD+      S+GG R+ + FVDDHS+ML      +KS+   A  +F+      +G  I+RLRSD GGEYT   FR F AE+GI
Sbjct:  384 LELVHTDVLSINVPSYGGRRYVVTFVDDHSRMLWVEALARKSDVFGAFQRFKAAAENESGKHIQRLRSDNGGEYTSHEFRDFLAEHGI 471          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF)

HSP 1 Score: 83.2 bits (204), Expect = 5.790e-17
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 LELVHTDIFGPVDK-SFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
            LEL+HTD+ GP+D  S   +R+ I+F+DDH++M      RQKSE      +F+  V + +G  IK LRSD+G EYT K F  FC + G++++ +
Sbjct:   40 LELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLT 133          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF)

HSP 1 Score: 83.6 bits (205), Expect = 6.810e-17
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 LELVHTDIFGPVDK-SFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
            LEL+HTDI GP+D  S   +R+ I+F+DDH++M      RQKSE      +F+  V + +G  IK LRSD+G EYT K F  FC + G++++ +
Sbjct:   40 LELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLT 133          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM)

HSP 1 Score: 84.0 bits (206), Expect = 7.080e-17
Identity = 40/94 (42.55%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
            L+LVHTD+ GP+  +S GG+R+ I F+DD+S++      R KS AL    +++  V   +G ++K++RSD+GGEYT   F +FCAE GI+++ +
Sbjct:   45 LQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGGEYTSSEFERFCAEMGIERQMT 138          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A4U0W4R2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W4R2_9BASI)

HSP 1 Score: 84.0 bits (206), Expect = 7.130e-17
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 LELVHTDIFGPVDKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGI 264
            LELVHTD+      S+GG R+ + FVDDHS+ML      +KS+   A  +F+      +G  I+RLRSD GGEYT   FR F AE+GI
Sbjct:  272 LELVHTDVLSINVPSYGGRRYVVTFVDDHSRMLWVEALARKSDVFGAFPRFKAAAENESGKHIQRLRSDNGGEYTSHEFRDFLAEHGI 359          
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A8J5GH11_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GH11_ZINOF)

HSP 1 Score: 83.2 bits (204), Expect = 8.280e-17
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 LELVHTDIFGPVDK-SFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
            LEL+HTD+ GP+D  S   +R+ I+F+DDH++M      RQKSE      +F+  V + +G  IK LRSD+G EYT K F  FC + G++++ +
Sbjct:   40 LELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLT 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0AUM6_9ASPA3.840e-1847.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0V7V6_9ASPA4.680e-1838.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QP37_CAJCA1.490e-1742.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A225ULM8_9STRA1.780e-1748.31Integrase catalytic domain-containing protein (Fra... [more]
A0A4U0W146_9BASI3.840e-1747.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5C7R4_ZINOF5.790e-1742.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5MAE0_ZINOF6.810e-1743.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6N2K750_SALVM7.080e-1742.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A4U0W4R2_9BASI7.130e-1747.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5GH11_ZINOF8.280e-1742.55Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15764contigH-paniculata_contig15764:5444..5722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog67593.Physo140614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.8145013-CDS-H-paniculata_contig15764:5443..57221622929256.8145013-CDS-H-paniculata_contig15764:5443..5722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15764 5444..5722 +
1691480790.2798376-CDS-H-paniculata_contig15764:5443..57221691480790.2798376-CDS-H-paniculata_contig15764:5443..5722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15764 5444..5722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15764.3341.1prot_H-paniculata_contig15764.3341.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15764 5444..5722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15764.3341.1

>prot_H-paniculata_contig15764.3341.1 ID=prot_H-paniculata_contig15764.3341.1|Name=mRNA_H-paniculata_contig15764.3341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
LELVHTDIFGPVDKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQ
FERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS
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mRNA from alignment at H-paniculata_contig15764:5444..5722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15764.3341.1 ID=mRNA_H-paniculata_contig15764.3341.1|Name=mRNA_H-paniculata_contig15764.3341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig15764:5444..5722+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGCTGGTGCACACGGACATATTCGGACCAGTGGACAAGTCCTTCGG AGGATCCCGCTTCACCATCATTTTCGTCGACGACCATAGCAAAATGCTCA AATTCAATACCTCGCGACAAAAGTCGGAGGCGCTATGGGCCCTGAACCAA TTTGAGAGGAACGTAGCGAGGGCAAACGGTTTGCGGATTAAGCGCCTTCG GTCTGATCAGGGAGGAGAATATACTGGGAAGCCTTTTCGGCAATTCTGCG CGGAAAACGGCATCAAGCAGAAGTTCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig15764:5444..5722+

>mRNA_H-paniculata_contig15764.3341.1 ID=mRNA_H-paniculata_contig15764.3341.1|Name=mRNA_H-paniculata_contig15764.3341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig15764:5444..5722+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGCTGGTGCACACGGACATATTCGGACCAGTGGACAAGTCCTTCGG
AGGATCCCGCTTCACCATCATTTTCGTCGACGACCATAGCAAAATGCTCA
AATTCAATACCTCGCGACAAAAGTCGGAGGCGCTATGGGCCCTGAACCAA
TTTGAGAGGAACGTAGCGAGGGCAAACGGTTTGCGGATTAAGCGCCTTCG
GTCTGATCAGGGAGGAGAATATACTGGGAAGCCTTTTCGGCAATTCTGCG
CGGAAAACGGCATCAAGCAGAAGTTCTCTTTGGAGCTGGTGCACACGGAC
ATATTCGGACCAGTGGACAAGTCCTTCGGAGGATCCCGCTTCACCATCAT
TTTCGTCGACGACCATAGCAAAATGCTCAAATTCAATACCTCGCGACAAA
AGTCGGAGGCGCTATGGGCCCTGAACCAATTTGAGAGGAACGTAGCGAGG
GCAAACGGTTTGCGGATTAAGCGCCTTCGGTCTGATCAGGGAGGAGAATA
TACTGGGAAGCCTTTTCGGCAATTCTGCGCGGAAAACGGCATCAAGCAGA
AGTTCTCT
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