mRNA_H-paniculata_contig15764.3341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A2I0AUM6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AUM6_9ASPA) HSP 1 Score: 82.8 bits (203), Expect = 3.840e-18 Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIK 267
LEL+HTD++GPV S GGSR+ I F+DD S + + KSE + +++ V GL+IK L+SD GGEY K F+ FCAEN IK
Sbjct: 51 LELIHTDVWGPVSVHSLGGSRYHITFIDDPSCKIWVYFLKNKSEVFSSFKKWKAEVENECGLKIKYLKSDNGGEYDSKEFKIFCAENNIK 140
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA) HSP 1 Score: 82.4 bits (202), Expect = 4.680e-18 Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 1 LELVHTDIFGPV-DKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
L+L+HTD+ GP+ SFG R+ + F+DD+S+ + ++KSEA +F+ + + +G IK +RSD+GGE+T K F+++C E+GI+ + +
Sbjct: 45 LQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGIRHQLT 138
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP37_CAJCA) HSP 1 Score: 85.9 bits (211), Expect = 1.490e-17 Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
LEL+HTD+ GP+ +S G S + + F+DD S+ ++KSE +F+ NV + NGL IK LRSD+GGE+T K F+++C +NGI+++ +
Sbjct: 460 LELIHTDVCGPIKPRSLGKSNYFLFFIDDFSRKTWVYFLKEKSEVFENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLT 553
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A225ULM8_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225ULM8_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.780e-17 Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGI 264
L++VH+D+ GP+ KS GG+RFT+IF+DD S+ + KSE L A +F R+ G +K +R+D GGEYTGK F FCA+NGI
Sbjct: 143 LDVVHSDVKGPMTPKSKGGARFTVIFIDDFSRFSFLYFLKAKSEMLKAFEEFRRSAETQTGEILKCIRTDNGGEYTGKRFNLFCAKNGI 231
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A4U0W146_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W146_9BASI) HSP 1 Score: 84.7 bits (208), Expect = 3.840e-17 Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1 LELVHTDIFGPVDKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGI 264
LELVHTD+ S+GG R+ + FVDDHS+ML +KS+ A +F+ +G I+RLRSD GGEYT FR F AE+GI
Sbjct: 384 LELVHTDVLSINVPSYGGRRYVVTFVDDHSRMLWVEALARKSDVFGAFQRFKAAAENESGKHIQRLRSDNGGEYTSHEFRDFLAEHGI 471
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF) HSP 1 Score: 83.2 bits (204), Expect = 5.790e-17 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 1 LELVHTDIFGPVDK-SFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
LEL+HTD+ GP+D S +R+ I+F+DDH++M RQKSE +F+ V + +G IK LRSD+G EYT K F FC + G++++ +
Sbjct: 40 LELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLT 133
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF) HSP 1 Score: 83.6 bits (205), Expect = 6.810e-17 Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 1 LELVHTDIFGPVDK-SFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
LEL+HTDI GP+D S +R+ I+F+DDH++M RQKSE +F+ V + +G IK LRSD+G EYT K F FC + G++++ +
Sbjct: 40 LELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLT 133
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM) HSP 1 Score: 84.0 bits (206), Expect = 7.080e-17 Identity = 40/94 (42.55%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 1 LELVHTDIFGPVD-KSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
L+LVHTD+ GP+ +S GG+R+ I F+DD+S++ R KS AL +++ V +G ++K++RSD+GGEYT F +FCAE GI+++ +
Sbjct: 45 LQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGGEYTSSEFERFCAEMGIERQMT 138
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A4U0W4R2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W4R2_9BASI) HSP 1 Score: 84.0 bits (206), Expect = 7.130e-17 Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1 LELVHTDIFGPVDKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGI 264
LELVHTD+ S+GG R+ + FVDDHS+ML +KS+ A +F+ +G I+RLRSD GGEYT FR F AE+GI
Sbjct: 272 LELVHTDVLSINVPSYGGRRYVVTFVDDHSRMLWVEALARKSDVFGAFPRFKAAAENESGKHIQRLRSDNGGEYTSHEFRDFLAEHGI 359
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Match: A0A8J5GH11_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GH11_ZINOF) HSP 1 Score: 83.2 bits (204), Expect = 8.280e-17 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 1 LELVHTDIFGPVDK-SFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQFERNVARANGLRIKRLRSDQGGEYTGKPFRQFCAENGIKQKFS 279
LEL+HTD+ GP+D S +R+ I+F+DDH++M RQKSE +F+ V + +G IK LRSD+G EYT K F FC + G++++ +
Sbjct: 40 LELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLT 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15764.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15764.3341.1 >prot_H-paniculata_contig15764.3341.1 ID=prot_H-paniculata_contig15764.3341.1|Name=mRNA_H-paniculata_contig15764.3341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp LELVHTDIFGPVDKSFGGSRFTIIFVDDHSKMLKFNTSRQKSEALWALNQback to top mRNA from alignment at H-paniculata_contig15764:5444..5722+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15764.3341.1 ID=mRNA_H-paniculata_contig15764.3341.1|Name=mRNA_H-paniculata_contig15764.3341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig15764:5444..5722+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15764:5444..5722+ >mRNA_H-paniculata_contig15764.3341.1 ID=mRNA_H-paniculata_contig15764.3341.1|Name=mRNA_H-paniculata_contig15764.3341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig15764:5444..5722+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |