mRNA_H-paniculata_contig1576.3339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1576.3339.1
Unique NamemRNA_H-paniculata_contig1576.3339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1576.3339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1576contigH-paniculata_contig1576:11129..11797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1576.3339.1prot_H-paniculata_contig1576.3339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1576 11153..11797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.6396163-UTR-H-paniculata_contig1576:11128..111521622929256.6396163-UTR-H-paniculata_contig1576:11128..11152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1576 11129..11152 +
1691480790.2174182-UTR-H-paniculata_contig1576:11128..111521691480790.2174182-UTR-H-paniculata_contig1576:11128..11152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1576 11129..11152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.6577659-CDS-H-paniculata_contig1576:11152..111861622929256.6577659-CDS-H-paniculata_contig1576:11152..11186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1576 11153..11186 +
1691480790.2330391-CDS-H-paniculata_contig1576:11152..111861691480790.2330391-CDS-H-paniculata_contig1576:11152..11186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1576 11153..11186 +
1622929256.674522-CDS-H-paniculata_contig1576:11534..117971622929256.674522-CDS-H-paniculata_contig1576:11534..11797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1576 11535..11797 +
1691480790.2412355-CDS-H-paniculata_contig1576:11534..117971691480790.2412355-CDS-H-paniculata_contig1576:11534..11797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1576 11535..11797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1576.3339.1

>prot_H-paniculata_contig1576.3339.1 ID=prot_H-paniculata_contig1576.3339.1|Name=mRNA_H-paniculata_contig1576.3339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MLCRHGFAVLRMEGKLGVAMIFIDDGYRTNTYRALYSAEDYCMVPPIPCM
LATDIRPSGRQLLWRDIPAGRNRGKGPGSGEFNSSSRFSQPIAELIGTA
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mRNA from alignment at H-paniculata_contig1576:11129..11797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1576.3339.1 ID=mRNA_H-paniculata_contig1576.3339.1|Name=mRNA_H-paniculata_contig1576.3339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=669bp|location=Sequence derived from alignment at H-paniculata_contig1576:11129..11797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGGTACCCGACGAGATTCGCAATGCTCTGCCGACATGGCTTTGCTGT
CCTGCGGAGTAAGTCGTGTAGTGTCTTGTACTTTGGCGTTGACCAGAAGA
GCATTATCAGCTTGGAATCGCTGCAGGGCATCAAGCGTCCGTGCATGGTC
CGGAATGCTTTTAGCGCTGCCTTTCGACTACATCAATTTTAGCGTTTGGA
AGGCAGTATCATGACACTTGCTGTGCTTCCACCTCTCCTTGGCATGATTT
GTTAGCTCCTTGATTTTCTCTACATTGTCGCGCTAGTCTGTACGTCTATT
GTAAGGGCGGCTCCAAACACGTTGAGCGAGTTCACTGCATTTATTTTGGC
CCAACCCACGATTTATTTACCGGTCGTGGACTCCGTTCCTTTTCAAATGT
TTTCAGTGGAGGGGAAGCTTGGGGTGGCGATGATTTTCATCGACGACGGG
TACCGCACGAACACTTACCGCGCTCTCTACTCCGCCGAGGACTACTGTAT
GGTGCCGCCGATCCCTTGCATGCTGGCCACGGACATCAGGCCCTCTGGTC
GCCAGCTCCTGTGGAGGGACATCCCGGCCGGCCGGAACCGAGGAAAAGGA
CCAGGATCCGGGGAATTCAACAGCTCGTCTAGGTTCAGTCAGCCTATTGC
GGAACTGATTGGGACGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig1576:11129..11797+

>mRNA_H-paniculata_contig1576.3339.1 ID=mRNA_H-paniculata_contig1576.3339.1|Name=mRNA_H-paniculata_contig1576.3339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig1576:11129..11797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGCCGACATGGCTTTGCTGTCCTGCGGAATGCTCTGCCGACATG
GCTTTGCTGTCCTGCGGATGGAGGGGAAGCTTGGGGTGGCGATGATTTTC
ATCGACGACGGGTACCGCACGAACACTTACCGCGCTCTCTACTCCGCCGA
GGACTACTGTATGGTGCCGCCGATCCCTTGCATGCTGGCCACGGACATCA
GGCCCTCTGGTCGCCAGCTCCTGTGGAGGGACATCCCGGCCGGCCGGAAC
CGAGGAAAAGGACCAGGATCCGGGGAATTCAACAGCTCGTCTAGGTTCAG
TCAGCCTATTGCGGAACTGATTGGGACGGCTTGGAGGGGAAGCTTGGGGT
GGCGATGATTTTCATCGACGACGGGTACCGCACGAACACTTACCGCGCTC
TCTACTCCGCCGAGGACTACTGTATGGTGCCGCCGATCCCTTGCATGCTG
GCCACGGACATCAGGCCCTCTGGTCGCCAGCTCCTGTGGAGGGACATCCC
GGCCGGCCGGAACCGAGGAAAAGGACCAGGATCCGGGGAATTCAACAGCT
CGTCTAGGTTCAGTCAGCCTATTGCGGAACTGATTGGGACGGCT
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