mRNA_H-paniculata_contig15757.3338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15757.3338.1
Unique NamemRNA_H-paniculata_contig15757.3338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Match: D8LM69_ECTSI (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM69_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.140e-32
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 VSEAEFLDREGLRALLAAAERGEVEFTPWSRYIIDRFVFEWWDHVGDKDRLKSFRDDVIHRVGTCAEK 204
            VS+AEFLD++GLR+LLA AERGEVEFTPWS YIID+FVF WWDHVGDK++L S RD VIHRVG+CA++
Sbjct:  166 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADE 233
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BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Match: A0A7S2UUE2_9STRA (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUE2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.240e-16
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   16 FLDREGLRALLAAAERGEVEFTPWSRYIIDRFVFEWWDHVGDKDRLKSFRDD--VIHRVGTCAEK 204
            ++  + LR ++  A+RGE++ TPWSRYIID F+F+WW  VGD+  L++  DD  VIHRVG CAE+
Sbjct:  247 YVTADELRDMMDQADRGEIKLTPWSRYIIDEFIFKWWPLVGDRKALEAQADDFSVIHRVGPCAEE 311
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BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Match: A0A3A5V6Z8_9ARCH (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Archaea TaxID=2157 RepID=A0A3A5V6Z8_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-8
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 VSEAEFLDREGLRALLAAAERGEVEFTPWSRYIIDRFVFE-WWDHVGDKDRLKSFRDDVIHRVGTCA 198
            VSE +++++E L  +L A   G+ E  PW R I  R + + WWD VGD D+L +  D++IH +G  +
Sbjct:  182 VSEVKWVNQEELEEMLVAEVEGDGEIAPWFRCIASRLMTDQWWDAVGDSDKLSAISDEMIHDMGDVS 248
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BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Match: A0A7S1ETW3_9RHOD (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETW3_9RHOD)

HSP 1 Score: 58.5 bits (140), Expect = 1.980e-8
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 VSEAEFLDREGLRALLAAAERGEVEFTPWSRYIIDRFVFEWWDHVGDKDRLKSFRDDV--IHRVG 189
            V + ++L+RE L+ LL     G V+ TPW +YI++ FVF+WWD +  K+ L+   D    IHR G
Sbjct:  236 VDDVKYLNREELKELLEQDGNGIVKVTPWFKYIVNAFVFQWWDQLDSKEVLRDAVDTQHQIHRFG 300
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BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Match: D3ZVY0_RAT (Isopentenyl-diphosphate Delta-isomerase n=8 Tax=Rattus TaxID=10114 RepID=D3ZVY0_RAT)

HSP 1 Score: 54.7 bits (130), Expect = 4.360e-7
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 VSEAEFLDREGLRALLAAAERGEVEFTPWSRYIIDRFVFEWWDHVGDKDRLKSFRDDVIHRV 186
            VS   +L RE L  LL    RGEV+ TPW R+++++F++ WW ++ +  R      D I+RV
Sbjct:  213 VSSFSYLTREELEELLERGARGEVQVTPWLRFVVEQFLYAWWPYLDEATRFIEL--DKIYRV 272
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BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Match: W7TKI6_9STRA (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKI6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.550e-6
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   61 RGEVEFTPWSRYIIDRFVFEWWDHVG-DKDRLKSFRDDV-IHRVG 189
            RG + FTPWSR I++R+++ WW  VG D  +L+  RD   IHR+G
Sbjct:  285 RGHIYFTPWSRAIMERWLYTWWPDVGADMGKLEKHRDTARIHRIG 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15757.3338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LM69_ECTSI2.140e-3276.47Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ec... [more]
A0A7S2UUE2_9STRA2.240e-1652.31Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Fi... [more]
A0A3A5V6Z8_9ARCH1.700e-838.81Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Ar... [more]
A0A7S1ETW3_9RHOD1.980e-841.54Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ti... [more]
D3ZVY0_RAT4.360e-738.71Isopentenyl-diphosphate Delta-isomerase n=8 Tax=Ra... [more]
W7TKI6_9STRA4.550e-648.89Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Mo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15757contigH-paniculata_contig15757:578..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.7e-25
Seed eggNOG ortholog2880.D8LM69
Preferred nameIDI1
KEGG rclassRC00455
KEGG koko:K01823,ko:K21773
KEGG ReactionR01123
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04218,map00900,map01100,map01110,map01130,map04218
KEGG ModuleM00095,M00096,M00364,M00365,M00366,M00367
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0003006,GO:0003674,GO:0003824,GO:0004452,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009536,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009987,GO:0010033,GO:0010894,GO:0014070,GO:0016114,GO:0016125,GO:0016126,GO:0016853,GO:0016860,GO:0016863,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0022414,GO:0030145,GO:0032501,GO:0032502,GO:0035634,GO:0042221,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0045541,GO:0045833,GO:0045939,GO:0046165,GO:0046490,GO:0046872,GO:0046890,GO:0046914,GO:0048367,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050810,GO:0050896,GO:0051055,GO:0061458,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0080090,GO:0090181,GO:0090206,GO:0090407,GO:0090567,GO:0106118,GO:0106119,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930,GO:1902931
EggNOG free text desc.isopentenyl-diphosphate delta-isomerase activity
EggNOG OGsCOG1443@1,KOG0142@2759
EC5.3.3.2
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.592199-CDS-H-paniculata_contig15757:577..7841622929256.592199-CDS-H-paniculata_contig15757:577..784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15757 578..784 +
1691480790.2040758-CDS-H-paniculata_contig15757:577..7841691480790.2040758-CDS-H-paniculata_contig15757:577..784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15757 578..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15757.3338.1prot_H-paniculata_contig15757.3338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15757 578..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15757.3338.1

>prot_H-paniculata_contig15757.3338.1 ID=prot_H-paniculata_contig15757.3338.1|Name=mRNA_H-paniculata_contig15757.3338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
VSEAEFLDREGLRALLAAAERGEVEFTPWSRYIIDRFVFEWWDHVGDKDR
LKSFRDDVIHRVGTCAEK*
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mRNA from alignment at H-paniculata_contig15757:578..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15757.3338.1 ID=mRNA_H-paniculata_contig15757.3338.1|Name=mRNA_H-paniculata_contig15757.3338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig15757:578..784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCAGAAGCAGAATTCCTGGACAGGGAAGGGTTGCGGGCCCTTTTAGC
AGCTGCTGAGCGGGGAGAAGTGGAATTTACTCCCTGGTCGCGATATATCA
TCGACCGTTTCGTGTTCGAGTGGTGGGATCACGTCGGCGATAAGGACAGG
CTGAAGTCCTTCCGGGATGACGTCATCCATCGAGTTGGAACGTGCGCGGA
GAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15757:578..784+

>mRNA_H-paniculata_contig15757.3338.1 ID=mRNA_H-paniculata_contig15757.3338.1|Name=mRNA_H-paniculata_contig15757.3338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig15757:578..784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCAGAAGCAGAATTCCTGGACAGGGAAGGGTTGCGGGCCCTTTTAGC
AGCTGCTGAGCGGGGAGAAGTGGAATTTACTCCCTGGTCGCGATATATCA
TCGACCGTTTCGTGTTCGAGTGGTGGGATCACGTCGGCGATAAGGACAGG
CTGAAGTCCTTCCGGGATGACGTCATCCATCGAGTTGGAACGTGCGCGGA
GAAATAGGTTTCAGAAGCAGAATTCCTGGACAGGGAAGGGTTGCGGGCCC
TTTTAGCAGCTGCTGAGCGGGGAGAAGTGGAATTTACTCCCTGGTCGCGA
TATATCATCGACCGTTTCGTGTTCGAGTGGTGGGATCACGTCGGCGATAA
GGACAGGCTGAAGTCCTTCCGGGATGACGTCATCCATCGAGTTGGAACGT
GCGCGGAGAAATAG
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