|
|
Homology
BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI) HSP 1 Score: 190 bits (483), Expect = 1.180e-48 Identity = 103/185 (55.68%), Postives = 120/185 (64.86%), Query Frame = 2
Query: 62 VPPPRLTVAALTACARGGEWRKAMDILHST----------RAASDNGN--------WEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGWREALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPTLGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQ 562
+PPPR TVAALTACARGG+W KA+ IL R+ S +G+ W + GQ SS AFNAALVACAKGA+ EA EG GWREALEVL M+ P+ T YG AITACG+A VDAC+ LL +M+R TPTL DYH SLRAC A R DA EIL+SM S GVE + Y AA+
Sbjct: 350 LPPPRATVAALTACARGGQWEKAVGILRDVQNKSGGLEADRSGSGDGSSVGGRSGAWTYFGQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVGPCPDLTGYGLAITACGFANNVDACVGLLGEMLRRDMTPTLADYHGSLRACAARRRDDAAQEILDSMGSEGVEPDARCYRFAAE 534
BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 3.680e-18 Identity = 73/190 (38.42%), Postives = 88/190 (46.32%), Query Frame = 2
Query: 62 VPPPRLTVAALTACARGGEWRKAMDILHSTR------AASDNGNWEH------------LGQLSSFAFNAALVACAKGAKAEAKEGSGDGWREALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPTLGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQVLQET 577
+PPPR TVAALTACARGG+W KA+ IL + +G+ +H Q SS AFNAALVACAKGA+ EA EG GWREALEVL DM+ G L A AR DA EIL+SM+S GVE + Y AA+ ++
Sbjct: 377 LPPPRATVAALTACARGGQWEKAVGILRDVQNNTGRVEVDRSGSGDHSSGNGGSGVCTYFNQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVL---------------------------------DMVSGSL----------LGASIIRARDDAAREILDSMASEGVEPDARCYRFAAEAFGQS 523
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 157.5 |
| Seed ortholog evalue | 7.2e-36 |
| Seed eggNOG ortholog | 2880.D7FTF1 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 1999 |
| Cds size | 675 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1575.3335.1 >prot_H-paniculata_contig1575.3335.1 ID=prot_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MDILHSTRAASDNGNWEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGW REALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPT LGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQVLQETS KSIVASSSEGSAPWREHANRLWQLARDSEERTLERGITAHGDPDDREGDG WDRIDVGGGSNLEAVGFEAAENAE* back to topmRNA from alignment at H-paniculata_contig1575:16860..21793+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1575.3335.1 ID=mRNA_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4934bp|location=Sequence derived from alignment at H-paniculata_contig1575:16860..21793+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGAGATAGGGGTCGACCGAGATTCGAGCAGTAGTGGATTCGGGCGGTTGG
GAGAGGGAGAGGTTCCGCCACCACGGTTGACCGTGGCCGCGCTGACGGCG
TGCGCGAGGTGAGGGATATCCTGTACTGTATATAGTGGAAATCGTTCTAA
TTTTCGTCTGTGTTTGCGGTTTTGTTTCTACAACATTTTTGATAGTTTTT
AGGCTCTCGAAACTAGATCAATAAACACACACACACACAAGAATCTTGTC
TATTCGGGGTTGCAGGGGTGGGTTTGCAGCGATGGGTTCCGGGACGGTGG
GGCTGGGACTGTTTGTTGACAAAGTCTGTACTTCGTGTAGAGCAAGCAAA
GAGGTACAAGACATAGCCGAAGAAACGAAATTGGTCAGGCTCCTGGTTTT
CACATTATCAAATAGGAGCGATCCTACCGCAACAGCGCGGCGGCATCAAC
TGAATAGTGTTGGTGAGTCATTCTACCATTTTCGGATGCATATGCCCAAT
TTAGGCGGATCAGGATTCACGGCTAAAAACCCCTTTTGACTTACCGCATG
TTGGGGTAGCCACCTTGAATCGAGGTAGCCACCCGTGTCGTGATCACTCC
GTACGTCGGTCGGTTTCTTCCTTCTTCTTGTTCTCTCCCAGGGGTGGGGA
GTGGCGGAAGGCAATGGACATATTGCATAGCACTCGAGCAGCGTCCGACA
ACGGTAACTGGGAGCACCTGGGGCAGCTGTCATCGTTTGCCTTCAACGCC
GCCCTAGTGGCATGCGCGAAGGTAAGAGATTACGGGTATTTTCAGATGAC
CGGCAGCGTTACACACGACACAAGACCAAACCAGACCCGGGTCACTGCAT
ATGTGTGTACCTGTACGGTTCCGTGACAGGTTGCCTTGTACGGCCGTATT
CTCTCCGGTCGGTTCCGTTTAGCATTCCGGTCGGTATGTGGTCGGTTCTG
TCAGATTTTACCGTTCATACGAAAAACCCTGGAAGTTGTTGTACGGTTTC
ACGGGGGGGTGTGCGACGTGTTCTCGTTGGGTTGGCCAACCGAAAACGGA
GAATGCCACACGGCTCTTTCTCCCATTTCCTTGGATCTGACCCCCTGCAT
TTGCTTTGTTTTTACATGACACAGGCCATCCGTGCCACTTCAATGAGTGC
CACGATTAGCGTTGTGGTCGTACGTTCAGGCGGAGTACGTGGCTTATCAG
ATATTAGTTGGGTGGTGCTGTATCTCAACGCTGCTAATTTTCTCGTCTTG
TCCTGCGTTTTTGTTCCTTGATTTTAACGGCATTTCAAAGGGAGCGAAGG
CAGAGGCTAAAGAAGGAAGTGGTGACGGGTGGCGAGAGGCTTTGGAGGTC
CTGCAGATGATGGTGCGCATGCGGGCGAATGCCATCATGAACACCTTTAA
CGTTTCCATATACAAATTATTAAGTCCCTTGAGTTCGCCAGTGAATTAGC
TAGCCAAGTTGATGAAAGAGAGATAGTGCTCCTTCCACAATCTTAGGTGC
CCCGACTTTCGACGTTAAAAACGAAATTAGCTGGTTATGAAAATTTACGG
CAAGATCGGCTAGAGCAGACAATAGGGTGTCGTAGCGACACAGTTCGAGA
GGTGATCAGGCCCATGCGTCTTATATGCACAGTCCGTCACTCGTCATGTA
TACGTTCATCTCTTTTCCATCCCTTGTCCGTGGGCCCCGAAAATGGCTCA
GTAAACATACGTCGGCGGCATATATGTTTGTCACTAATAAGTACTGAAGA
AGAGCGTATCAAAAGTGATGGCGAAGGGACAAGCTTGACCAAATGCTCGG
GTACTGCCACAATTTCTAAAAGCAATATGCGTGTTGGTGTTGCTTCCGTG
GCTGAACGTGGCGGGATTAAGCTTCTCGCTGGGGCATTCTTGTCACTTGT
GCTGTTCTCAATAACCCAGACATTTCTCCCCTTTGCTGTTTCCTGTTTTG
CTTCTGATTTTAAGGTTTGGGGATAAATACATATCGTTTGATCCGCCTCC
CCCATCAGTTATCATGCAGTGTCTTAACTGTTGGCGAGTGTATGACTACA
ATGAGCACACGACGCGTGTTTTTATTCGAATATTTTTCAAGATTCCAATG
TAATGCGAACCCCCCCCCTCCCACGCCAAACGCCTACGTATGTACGTCGA
TGTTGACAGGACGTACCGCCAAACCGGACAAACTACGGCTGTGCAATTAC
GGCCTGTGGGTATGCTGGCGAGGTGGATGCGTGCCTGAATCTTCTGCGCG
ACATGATTCGAGGTGGTGCTACCCCCACATTGGGGGACTACCACAACTCG
CTTCGGGCGTGCACGGCAACAGCAAGGTGAGCAAACTTTAGCTTGATACA
GCGGCTGAGCGATGCAGGTGCCGCAGCCTGACGTAGTGTTTATCACGCTG
CGTAACACCTCCCCGAGTTATGACGATCGAAATCGAAATTCTTCAGAACT
ATACGGCTTGTGACACCGAATGTTGCTTTGTGGAAAGGATCTTGGCGAGA
CGGGTTTCTCACAAGAAAGACAAGTTCTTTCGACGGTGAAGGATGTTTGT
TTGCTTATCCAAAAAACTAACCCTGGAAAGGTCCGAAGGTATCACCCAGC
GTGAAGTGACACAACCTATAAACTACGGTAGTACCCAGCAATTCTGGATT
AGTCGAGACACGTGACCATAGTAACTGAACAGTTTGAAAAAGCCTTTAGT
GTGATGGCGCAATCGCGTTTTCTTTGCGGAGAACCATCGTTTTACACTAT
GCGTCTCCGTCGGCTTTGCGCGATGTTTTTCTCTCTTACTTTGATTGGCC
GATGACCCTTGCTTGTATCGCGGTATAGTGGTAATACTGCGCACTGGTGC
CTGGCGTCGTTTTATACATACCCTGCTGGCACCCAGGTTGCTCCCGTCCT
CGTCTCCCGCGTAGCGGAACTCTGCACTTCGTGTTCGGCTTTCGTCCTGT
GTGATTTGTTTTTTGACGAACGAGGGGCTCGGGCAATGAAGTCGGAAAAA
ATGCCGGTGCCACCTCACATGTCCTCCCTTGTGCCATAAGGCGAGAATGT
TACGTACTCCCACCAACCCGCTTAACCGCCATGGTCACATTAAAACGTCA
CTACGTTTGGATTTGCAGGGTTCGATTCCAAAACAATACTAAAGGCTTGT
CGCAACATTGATATGCTCGTGTTTTTTCGTATTTTCGTACATCGTATTTG
CTTGCTTGAACTTGTCGTGTTGGGCAAAGTATCCATATCTATTTTTCATC
ATCTCTTTCGTACCGTATCTGAAGCCTAACGATTATGTATCATGCAAAGT
ATCTACTCGCAAGTTCACGGCGTTCCGCATCAGAAGACATGCCTTGATAC
CAGAAACTGCTTCCTCCCTTTGTGTGTACCATCACGTCACGCGGTTGGCT
ACAATCATCTAGAGGTGACGCAGTGTTGGAAATCTTGGAGTCGATGAGTT
CAACAGGCGTGGAGGCGAAGTCACATATTTACAGCATGGCGGCGCAAGTG
CTCCAAGAAACATCGAAATCGATAGTCGCGTCTTCATCCGAAGGCAGCGC
CCCTTGGAGGGAGCACGCCAATCGATTGTGGCAGCTTGCTCGAGATTCTG
AGGAGAGAACATTGGAGCGAGGCATCACTGCTCATGGCGACCCTGATGAC
AGGGAGGGTGACGGGTGGGACCGGATTGACGTAGGTGGGGGCTCGAATTT
GGAAGCGGTTGGCTTTGAGGCCGCGGAGAATGCCGAATAGGAACAGCCGT
TCAAGGAGAACGAGAGGAAGACTGTGACTGTTGAGTGATGAGATAGTTTG
AGGCTATTGCTGGGTCATAGGATTCACGGTGCTTGTGTCAAATCTCCTGC
CTTCGTGTTCGTGTCCAACGAGCGTAAGACATCGTGGGCCTCTCTGTCGT
GATTTTGTGTTTAGTTGGGTAGTGCGTGAGGCCTCTTTGGGAGGGCTACT
TTGTCTAACATTCCCGGTTGCTATTCTTCTCTTGACGCTCATACGGTGGC
ACCCGCACGAAAAGCCTGGTTTGTGGGTTCACCATCTTCGTGTGCTTGCC
TTGGGGCGATAAACTCAAAGAGTGCCAAACGCACTAAGGGAGTAGCAGGG
TAAATGACTCAAAATCCAGAAAGCCAAGAAAGAGGCGAGATTGGGTGTGT
ATAATATCCTACGGGTGTATAGGCACATACTCACGAAGGTATCACCGCGG
TATACCGTCGGTGACATTGTAGGTGACCCCTGAGGTTATCTGTATTTCAT
ACACCCCACCCAATTTTTTCAGGGAATTTCAATGTCACACAGGGCGACGT
CGTATCATCCCGCCCCTGAGTGTGAAGCGGCACATGCATATTATTACCTC
CACCCTTAAACATCGAAGCACGGGCTAGCTAGCTGCCTTCGACCAGTCGT
CATACCGTGTGCATGCCGTGTATAGCGATAGGGTACCCCGCCTGATATCG
TATGTATTCCAAGGAAGATTAATTCTGTGTGGAGAACGGAGTGACGTTCA
ATGGACGACTTCCGTACCGTTTGGTGTTCTGTCAGTATGTTGGGAGGAGC
ACGCCGTAACCAGCGTGTTCCGTGATGTGTTAGGGCATCTGTATAGTGCT
GATTGGTGTAAAGGTGAATTACGTTGTAAAGCCCGGAGAGGTGCTTGCGG
CCTGTTTCAATGAGGAGACCATGAACCTTCACTCAGGTGCTCTGCAACTA
CACATACGGCACCTGCACTTTGCCTGGGATACCGCACACACGACTGCCTA
ATGATGATGCTGCGATCAAACTGATGGCATAGTGCAGTCGGTGCTTTTCG
TGTGATGAATAAATATACACTGTACTATTAAGCTAATCGTATATCACGAT
TAAACATGAAAATATCGGCAAAATTGGCAGCAAATTGCAAAATAGATTTT
GGTACTGTTGTTCGGTTATTGCCGATCTTTCCCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1575:16860..21793+ >mRNA_H-paniculata_contig1575.3335.1 ID=mRNA_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig1575:16860..21793+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGACATATTGCATAGCACTCGAGCAGCGTCCGACAACGGTAACTGGGA GCACCTGGGGCAGCTGTCATCGTTTGCCTTCAACGCCGCCCTAGTGGCAT GCGCGAAGATGGACATATTGCATAGCACTCGAGCAGCGTCCGACAACGGT AACTGGGAGCACCTGGGGCAGCTGTCATCGTTTGCCTTCAACGCCGCCCT AGTGGCATGCGCGAAGGGAGCGAAGGCAGAGGCTAAAGAAGGAAGTGGTG ACGGGTGGCGAGAGGCTTTGGAGGTCCTGCAGATGATGGGAGCGAAGGCA GAGGCTAAAGAAGGAAGTGGTGACGGGTGGCGAGAGGCTTTGGAGGTCCT GCAGATGATGGACGTACCGCCAAACCGGACAAACTACGGCTGTGCAATTA CGGCCTGTGGGTATGCTGGCGAGGTGGATGCGTGCCTGAATCTTCTGCGC GACATGATTCGAGGTGGTGCTACCCCCACATTGGGGGACTACCACAACTC GCTTCGGGCGTGCACGGCAACAGCAAGGACGTACCGCCAAACCGGACAAA CTACGGCTGTGCAATTACGGCCTGTGGGTATGCTGGCGAGGTGGATGCGT GCCTGAATCTTCTGCGCGACATGATTCGAGGTGGTGCTACCCCCACATTG GGGGACTACCACAACTCGCTTCGGGCGTGCACGGCAACAGCAAGAGGTGA CGCAGTGTTGGAAATCTTGGAGTCGATGAGTTCAACAGGCGTGGAGGCGA AGTCACATATTTACAGCATGGCGGCGCAAGTGCTCCAAGAAACATCGAAA TCGATAGTCGCGTCTTCATCCGAAGGCAGCGCCCCTTGGAGGGAGCACGC CAATCGATTGTGGCAGCTTGCTCGAGATTCTGAGGAGAGAACATTGGAGC GAGGCATCACTGCTCATGGCGACCCTGATGACAGGGAGGGTGACGGGTGG GACCGGATTGACGTAGGTGGGGGCTCGAATTTGGAAGCGGTTGGCTTTGA GGCCGCGGAGAATGCCGAATAGAGGTGACGCAGTGTTGGAAATCTTGGAG TCGATGAGTTCAACAGGCGTGGAGGCGAAGTCACATATTTACAGCATGGC GGCGCAAGTGCTCCAAGAAACATCGAAATCGATAGTCGCGTCTTCATCCG AAGGCAGCGCCCCTTGGAGGGAGCACGCCAATCGATTGTGGCAGCTTGCT CGAGATTCTGAGGAGAGAACATTGGAGCGAGGCATCACTGCTCATGGCGA CCCTGATGACAGGGAGGGTGACGGGTGGGACCGGATTGACGTAGGTGGGG GCTCGAATTTGGAAGCGGTTGGCTTTGAGGCCGCGGAGAATGCCGAATAG back to top
|