prot_H-paniculata_contig15747.3334.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig15747.3334.1
Unique Nameprot_H-paniculata_contig15747.3334.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length687
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15747.3334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 88..116
e-value: 0.68
score: 10.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 407..446
e-value: 3.4E-7
score: 30.3
coord: 608..653
e-value: 4.5E-12
score: 46.0
coord: 328..375
e-value: 1.7E-12
score: 47.3
coord: 118..166
e-value: 2.3E-10
score: 40.5
coord: 468..515
e-value: 2.0E-12
score: 47.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 191..225
e-value: 4.7E-6
score: 24.4
coord: 436..470
e-value: 3.1E-8
score: 31.3
coord: 541..575
e-value: 1.6E-8
score: 32.2
coord: 226..260
e-value: 1.1E-9
score: 35.9
coord: 471..505
e-value: 2.1E-8
score: 31.8
coord: 331..365
e-value: 4.7E-10
score: 37.0
coord: 577..610
e-value: 6.2E-10
score: 36.6
coord: 122..155
e-value: 7.3E-7
score: 27.0
coord: 366..400
e-value: 6.5E-7
score: 27.1
coord: 156..189
e-value: 7.7E-9
score: 33.2
coord: 611..644
e-value: 1.0E-7
score: 29.6
coord: 296..329
e-value: 3.2E-8
score: 31.3
coord: 262..295
e-value: 4.6E-7
score: 27.6
coord: 86..120
e-value: 2.0E-4
score: 19.3
coord: 402..435
e-value: 2.6E-7
score: 28.4
coord: 506..540
e-value: 1.8E-7
score: 28.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 176..237
e-value: 1.5E-11
score: 44.2
coord: 526..586
e-value: 7.5E-15
score: 54.8
coord: 247..307
e-value: 2.0E-14
score: 53.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 154..188
score: 12.671
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 11.564
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 574..608
score: 13.789
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 644..678
score: 9.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 11.871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 84..118
score: 9.306
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..328
score: 13.504
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 504..538
score: 12.452
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..258
score: 13.866
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 469..503
score: 13.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..433
score: 12.638
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 609..643
score: 13.373
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 434..468
score: 11.641
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 539..573
score: 13.329
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 119..153
score: 11.904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 189..223
score: 11.707
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 329..363
score: 13.526
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 404..513
e-value: 2.3E-39
score: 136.6
coord: 165..272
e-value: 4.4E-38
score: 132.4
coord: 42..164
e-value: 2.7E-27
score: 97.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 514..685
e-value: 8.9E-60
score: 204.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 273..397
e-value: 4.2E-44
score: 153.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 61..225
coord: 188..356
coord: 492..679
coord: 331..515
NoneNo IPR availablePRODOMPD104036coord: 518..616
e-value: 0.005
score: 100.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15747contigH-paniculata_contig15747:1407..3467 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15747.3334.1mRNA_H-paniculata_contig15747.3334.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig15747 414..3824 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig15747.3334.1 ID=prot_H-paniculata_contig15747.3334.1|Name=mRNA_H-paniculata_contig15747.3334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=687bp
MMGGRQPQSRGIREGGDNAGHAGRPAEAGGVTGVRETRLSYDNVAISKSY
AGRLKQAGIRRRWKEAKEVLKEALARDDASLVVNDYVYAAAINVAGKCRK
WTGALAILSLMRERGVTPNVAIYTSAMKTCGRCGQWTEAMRLLREMRLEG
VNPDVVTYTSAITACGKARQWEEALSLLKEMEREGVRADVICYSSAISAC
GDSGQWVQAMRLLREMQREGATPNAVSYNSAIKACGNCGQWEEAMHLLRE
MEREGVSPDIMSYTSAITACRNGGQWEEAVTLLREMKAEGVTPDVVSYNS
VITACGKCGQWEEAIGLLREMFREGATPNDVSYNSAIKACGNSGQWEEAL
SLLREMPREGISPDVVSYSSAITACGNGGQWKKAVSLLREMQRERVIPNV
ASYSSAIKACGDCGKWEEAMRLLKEIQRNGVSPNVVCYNSAITACGKAMQ
WEEAMGVLREMQRESVSPDVVSYSSAITACGQSGQWEEAIGLLREMQREG
VTPNVVSYSSAITACGTCRQWEEAMRLLREMQNEGVSPDVVSYNSAIAAC
ANSGQWEQALGLLREMQKQGVTPNVASYNSAIKACAKGGQMEEAIRLLRE
MQREGVTPDVVSYNSAITACEEGGQWEEAMSLLREMERRGVTPNDVSYSS
AVIACRNSGQCEESISLLREMRREGATVDTVNKNRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf