mRNA_H-paniculata_contig15747.3334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15747.3334.1
Unique NamemRNA_H-paniculata_contig15747.3334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15747.3334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15747contigH-paniculata_contig15747:414..3824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2916
Cds size2061
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15747.3334.1prot_H-paniculata_contig15747.3334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15747 1407..3467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.1064475-UTR-H-paniculata_contig15747:413..7431622929256.1064475-UTR-H-paniculata_contig15747:413..743Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15747 414..743 +
1691480789.9670005-UTR-H-paniculata_contig15747:413..7431691480789.9670005-UTR-H-paniculata_contig15747:413..743Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15747 414..743 +
1622929256.1215148-UTR-H-paniculata_contig15747:1238..14061622929256.1215148-UTR-H-paniculata_contig15747:1238..1406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15747 1239..1406 +
1691480789.9751205-UTR-H-paniculata_contig15747:1238..14061691480789.9751205-UTR-H-paniculata_contig15747:1238..1406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15747 1239..1406 +
1622929256.1444495-UTR-H-paniculata_contig15747:3467..38241622929256.1444495-UTR-H-paniculata_contig15747:3467..3824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15747 3468..3824 +
1691480789.9907124-UTR-H-paniculata_contig15747:3467..38241691480789.9907124-UTR-H-paniculata_contig15747:3467..3824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15747 3468..3824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.1323705-CDS-H-paniculata_contig15747:1406..34671622929256.1323705-CDS-H-paniculata_contig15747:1406..3467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15747 1407..3467 +
1691480789.9825902-CDS-H-paniculata_contig15747:1406..34671691480789.9825902-CDS-H-paniculata_contig15747:1406..3467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15747 1407..3467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15747.3334.1

>prot_H-paniculata_contig15747.3334.1 ID=prot_H-paniculata_contig15747.3334.1|Name=mRNA_H-paniculata_contig15747.3334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=687bp
MMGGRQPQSRGIREGGDNAGHAGRPAEAGGVTGVRETRLSYDNVAISKSY
AGRLKQAGIRRRWKEAKEVLKEALARDDASLVVNDYVYAAAINVAGKCRK
WTGALAILSLMRERGVTPNVAIYTSAMKTCGRCGQWTEAMRLLREMRLEG
VNPDVVTYTSAITACGKARQWEEALSLLKEMEREGVRADVICYSSAISAC
GDSGQWVQAMRLLREMQREGATPNAVSYNSAIKACGNCGQWEEAMHLLRE
MEREGVSPDIMSYTSAITACRNGGQWEEAVTLLREMKAEGVTPDVVSYNS
VITACGKCGQWEEAIGLLREMFREGATPNDVSYNSAIKACGNSGQWEEAL
SLLREMPREGISPDVVSYSSAITACGNGGQWKKAVSLLREMQRERVIPNV
ASYSSAIKACGDCGKWEEAMRLLKEIQRNGVSPNVVCYNSAITACGKAMQ
WEEAMGVLREMQRESVSPDVVSYSSAITACGQSGQWEEAIGLLREMQREG
VTPNVVSYSSAITACGTCRQWEEAMRLLREMQNEGVSPDVVSYNSAIAAC
ANSGQWEQALGLLREMQKQGVTPNVASYNSAIKACAKGGQMEEAIRLLRE
MQREGVTPDVVSYNSAITACEEGGQWEEAMSLLREMERRGVTPNDVSYSS
AVIACRNSGQCEESISLLREMRREGATVDTVNKNRI*
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mRNA from alignment at H-paniculata_contig15747:414..3824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15747.3334.1 ID=mRNA_H-paniculata_contig15747.3334.1|Name=mRNA_H-paniculata_contig15747.3334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3411bp|location=Sequence derived from alignment at H-paniculata_contig15747:414..3824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAAGATGAACCCTTTCGACACGCACGTGGAGCATACATCCCTGGCCA
GACAACGTTTCCTCCCCGCAAAGAACCGCCGCTGCAGCGCTGCACAACAT
CACAACAACACCCCGACTACGTTCTGTCAATTGCCTACTGTGCAAGGCCG
GGATGCCCGTCAACGCAGAACATGCCTCAAAACCTATGCGGCAGGCAGAA
CACTAGGCAATTCACAAACACAGCAGGGGCGGTGCAGTGGTCTCTAGCGG
TCGCTCCCTGCGTAGAAGAAATACTCCGCTACCCGGCGGCGTGGGCCCTA
CATTTTTTACGCTGGGTGTGATATATTTGGGTAGGTAAAGGGGGTCCTTA
CTTTGTTTGCGTTGATTTCGCCGGGGCCTCTGCCGCGTACGACCGCTGAT
CCCACTTTAGAAGAAGTGCGGAGTCTGTACGTGGCAAATACAAGGTTCTA
CGGCTACACTTGAGTTGGTTATTCCTGGTGATGATCAGGCGGCAGCCACT
ACGCTCGTCCTATGCTTGTTCGATACTCGTCTTATGCGCGATGGCCACTA
TTTTGGTCGTTACAGAAAGTACCACCGTATGCAGTCAGTTGTGCTGGGGG
CCTTCAGTTCTGAATATACATCAATATTGCGGAAGAAAACGTTTCCAATG
CTTGGGAGTTTTATCAAGTCGTGTTGTCGGATCGATAGATAAAATTACGT
CAAATATGTTACAGTGCAAAAGCTCATGATCTCGGGGCAAACGCGGATAT
CTCTTTATTGATCTAGTTGGCGCCACTACTCTGTAACACGTTGCATTGAT
TCTTCACCCCTTTCTCCGTCCGCAGCCCTTATTAGGTTGGTTTGATGCAA
TCGCTCTTGGCCATGCCGCTGGGTCTGCGAAATGCTCGATCCAACGGACG
AAGGCGCCAACCACCTCGGTGGCGGACACGTCTGGTTTTACTCGGTTATT
GTGGGCTGTATGTTCGTCCGCTAGAGTTGGGTCAGAAACAGAAATGATGG
GTGGCAGGCAGCCTCAGAGCCGCGGCATACGTGAGGGTGGTGATAATGCC
GGGCATGCGGGTAGGCCAGCAGAGGCGGGGGGGGTTACAGGTGTACGTGA
GACACGACTTTCTTATGATAATGTGGCGATTAGCAAGTCCTACGCGGGAC
GATTGAAGCAAGCAGGCATCAGGCGACGCTGGAAGGAGGCGAAAGAAGTC
TTGAAGGAAGCTCTCGCTCGCGACGATGCGAGTTTAGTTGTGAATGACTA
CGTCTACGCAGCCGCTATAAATGTCGCGGGGAAGTGTCGTAAATGGACGG
GAGCGCTTGCAATTTTGTCGTTGATGAGGGAAAGGGGTGTGACCCCTAAT
GTCGCGATCTATACCTCAGCGATGAAAACGTGCGGAAGATGCGGGCAGTG
GACAGAGGCGATGCGTCTGTTGCGGGAAATGCGACTGGAGGGTGTAAACC
CCGATGTTGTGACGTACACTTCGGCTATCACAGCGTGCGGAAAGGCTAGG
CAGTGGGAAGAGGCCTTGAGTCTGTTAAAAGAGATGGAGAGGGAAGGTGT
AAGGGCCGATGTCATATGCTATAGCTCGGCTATCTCAGCTTGTGGAGATA
GTGGGCAGTGGGTACAGGCCATGCGTCTGTTGAGGGAGATGCAGCGGGAG
GGTGCAACCCCCAATGCTGTGAGCTATAATTCGGCAATCAAAGCCTGCGG
AAATTGCGGGCAGTGGGAGGAGGCAATGCATCTGTTGAGGGAAATGGAGA
GGGAAGGTGTAAGTCCCGACATCATGAGCTACACTTCGGCAATCACAGCG
TGTCGAAACGGTGGACAATGGGAAGAGGCGGTGACTTTGTTAAGGGAGAT
GAAGGCGGAGGGCGTTACCCCCGACGTCGTGAGCTACAATTCCGTAATCA
CAGCGTGCGGAAAATGCGGGCAGTGGGAGGAGGCCATAGGTCTACTGAGG
GAAATGTTCAGAGAGGGTGCAACGCCCAATGACGTGAGCTACAATTCGGC
GATCAAAGCGTGCGGGAACAGTGGGCAATGGGAGGAGGCCCTGAGCCTGT
TGAGAGAGATGCCGAGGGAAGGCATAAGCCCTGATGTAGTAAGCTACAGC
TCGGCGATTACCGCCTGTGGGAACGGCGGGCAGTGGAAGAAGGCCGTTAG
CCTATTGAGAGAAATGCAGAGAGAACGTGTAATCCCCAATGTCGCGAGTT
ATAGCTCAGCGATCAAAGCATGCGGAGATTGTGGGAAGTGGGAGGAGGCC
ATGCGCCTGTTGAAGGAGATTCAGAGGAATGGTGTATCACCTAATGTGGT
GTGCTACAACTCCGCCATCACAGCATGCGGAAAAGCTATGCAATGGGAGG
AGGCGATGGGCGTATTGAGGGAGATGCAGAGAGAGTCTGTGAGCCCCGAT
GTCGTGAGCTACAGTTCAGCGATCACAGCGTGCGGACAAAGTGGACAATG
GGAGGAGGCCATCGGTCTGTTGAGAGAGATGCAAAGAGAGGGTGTAACCC
CGAACGTGGTGAGTTACAGCTCAGCGATCACAGCGTGTGGAACCTGCAGG
CAGTGGGAGGAGGCAATGCGGCTGTTGAGAGAGATGCAGAATGAGGGTGT
AAGCCCCGATGTCGTCAGCTACAACTCGGCGATTGCAGCGTGTGCAAACA
GTGGACAATGGGAACAGGCGCTTGGTCTGTTGAGAGAGATGCAGAAGCAA
GGTGTAACCCCCAACGTCGCTAGCTACAACTCGGCGATCAAAGCGTGTGC
AAAGGGCGGGCAGATGGAGGAGGCGATCCGTCTATTGAGGGAGATGCAGC
GGGAGGGTGTAACCCCCGATGTGGTGAGCTACAATTCCGCTATTACAGCC
TGTGAAGAAGGCGGGCAGTGGGAGGAGGCCATGAGTCTGTTGAGGGAGAT
GGAGAGGCGGGGTGTAACCCCCAATGATGTGAGCTACAGCTCGGCAGTCA
TAGCGTGTCGCAACAGCGGACAGTGTGAGGAGTCCATCAGTCTGCTTAGA
GAGATGCGAAGGGAGGGTGCAACAGTCGATACCGTCAACAAAAATCGGAT
ATAGAGCAGTCTGTCAAGAACAGCATTTATGATAGGAATATATGATTCAG
AGAGAGGAGTAAGCCTCAGCTGCATACGCCGAGCTTGGTTTGGCGGGAAT
CGGATCCGTATTGGGGGAGCTACTTCAGAAATTTGCGTCAAGTTGAAAAG
ACAAAAGTGCGGGTGTTTGGCTTGTTGGCAACGCACATAGAACATCTGCT
CTCCATCAATTTGGAGAAGATTGAACCCAAATCAAGTAATAGATGATACA
TGGCGCTCAGTTGATCAAGAGCTACCTACGTCTTGAGCTACGTTTCGTTG
TATCGGCAGCAACAATGAAATGTTCACGCTTATGATCGGTAGTTCCGCAC
CACTTCTATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig15747:414..3824+

>mRNA_H-paniculata_contig15747.3334.1 ID=mRNA_H-paniculata_contig15747.3334.1|Name=mRNA_H-paniculata_contig15747.3334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4122bp|location=Sequence derived from alignment at H-paniculata_contig15747:414..3824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGTGGCAGGCAGCCTCAGAGCCGCGGCATACGTGAGGGTGGTGA
TAATGCCGGGCATGCGGGTAGGCCAGCAGAGGCGGGGGGGGTTACAGGTG
TACGTGAGACACGACTTTCTTATGATAATGTGGCGATTAGCAAGTCCTAC
GCGGGACGATTGAAGCAAGCAGGCATCAGGCGACGCTGGAAGGAGGCGAA
AGAAGTCTTGAAGGAAGCTCTCGCTCGCGACGATGCGAGTTTAGTTGTGA
ATGACTACGTCTACGCAGCCGCTATAAATGTCGCGGGGAAGTGTCGTAAA
TGGACGGGAGCGCTTGCAATTTTGTCGTTGATGAGGGAAAGGGGTGTGAC
CCCTAATGTCGCGATCTATACCTCAGCGATGAAAACGTGCGGAAGATGCG
GGCAGTGGACAGAGGCGATGCGTCTGTTGCGGGAAATGCGACTGGAGGGT
GTAAACCCCGATGTTGTGACGTACACTTCGGCTATCACAGCGTGCGGAAA
GGCTAGGCAGTGGGAAGAGGCCTTGAGTCTGTTAAAAGAGATGGAGAGGG
AAGGTGTAAGGGCCGATGTCATATGCTATAGCTCGGCTATCTCAGCTTGT
GGAGATAGTGGGCAGTGGGTACAGGCCATGCGTCTGTTGAGGGAGATGCA
GCGGGAGGGTGCAACCCCCAATGCTGTGAGCTATAATTCGGCAATCAAAG
CCTGCGGAAATTGCGGGCAGTGGGAGGAGGCAATGCATCTGTTGAGGGAA
ATGGAGAGGGAAGGTGTAAGTCCCGACATCATGAGCTACACTTCGGCAAT
CACAGCGTGTCGAAACGGTGGACAATGGGAAGAGGCGGTGACTTTGTTAA
GGGAGATGAAGGCGGAGGGCGTTACCCCCGACGTCGTGAGCTACAATTCC
GTAATCACAGCGTGCGGAAAATGCGGGCAGTGGGAGGAGGCCATAGGTCT
ACTGAGGGAAATGTTCAGAGAGGGTGCAACGCCCAATGACGTGAGCTACA
ATTCGGCGATCAAAGCGTGCGGGAACAGTGGGCAATGGGAGGAGGCCCTG
AGCCTGTTGAGAGAGATGCCGAGGGAAGGCATAAGCCCTGATGTAGTAAG
CTACAGCTCGGCGATTACCGCCTGTGGGAACGGCGGGCAGTGGAAGAAGG
CCGTTAGCCTATTGAGAGAAATGCAGAGAGAACGTGTAATCCCCAATGTC
GCGAGTTATAGCTCAGCGATCAAAGCATGCGGAGATTGTGGGAAGTGGGA
GGAGGCCATGCGCCTGTTGAAGGAGATTCAGAGGAATGGTGTATCACCTA
ATGTGGTGTGCTACAACTCCGCCATCACAGCATGCGGAAAAGCTATGCAA
TGGGAGGAGGCGATGGGCGTATTGAGGGAGATGCAGAGAGAGTCTGTGAG
CCCCGATGTCGTGAGCTACAGTTCAGCGATCACAGCGTGCGGACAAAGTG
GACAATGGGAGGAGGCCATCGGTCTGTTGAGAGAGATGCAAAGAGAGGGT
GTAACCCCGAACGTGGTGAGTTACAGCTCAGCGATCACAGCGTGTGGAAC
CTGCAGGCAGTGGGAGGAGGCAATGCGGCTGTTGAGAGAGATGCAGAATG
AGGGTGTAAGCCCCGATGTCGTCAGCTACAACTCGGCGATTGCAGCGTGT
GCAAACAGTGGACAATGGGAACAGGCGCTTGGTCTGTTGAGAGAGATGCA
GAAGCAAGGTGTAACCCCCAACGTCGCTAGCTACAACTCGGCGATCAAAG
CGTGTGCAAAGGGCGGGCAGATGGAGGAGGCGATCCGTCTATTGAGGGAG
ATGCAGCGGGAGGGTGTAACCCCCGATGTGGTGAGCTACAATTCCGCTAT
TACAGCCTGTGAAGAAGGCGGGCAGTGGGAGGAGGCCATGAGTCTGTTGA
GGGAGATGGAGAGGCGGGGTGTAACCCCCAATGATGTGAGCTACAGCTCG
GCAGTCATAGCGTGTCGCAACAGCGGACAGTGTGAGGAGTCCATCAGTCT
GCTTAGAGAGATGCGAAGGGAGGGTGCAACAGTCGATACCGTCAACAAAA
ATCGGATATAGATGATGGGTGGCAGGCAGCCTCAGAGCCGCGGCATACGT
GAGGGTGGTGATAATGCCGGGCATGCGGGTAGGCCAGCAGAGGCGGGGGG
GGTTACAGGTGTACGTGAGACACGACTTTCTTATGATAATGTGGCGATTA
GCAAGTCCTACGCGGGACGATTGAAGCAAGCAGGCATCAGGCGACGCTGG
AAGGAGGCGAAAGAAGTCTTGAAGGAAGCTCTCGCTCGCGACGATGCGAG
TTTAGTTGTGAATGACTACGTCTACGCAGCCGCTATAAATGTCGCGGGGA
AGTGTCGTAAATGGACGGGAGCGCTTGCAATTTTGTCGTTGATGAGGGAA
AGGGGTGTGACCCCTAATGTCGCGATCTATACCTCAGCGATGAAAACGTG
CGGAAGATGCGGGCAGTGGACAGAGGCGATGCGTCTGTTGCGGGAAATGC
GACTGGAGGGTGTAAACCCCGATGTTGTGACGTACACTTCGGCTATCACA
GCGTGCGGAAAGGCTAGGCAGTGGGAAGAGGCCTTGAGTCTGTTAAAAGA
GATGGAGAGGGAAGGTGTAAGGGCCGATGTCATATGCTATAGCTCGGCTA
TCTCAGCTTGTGGAGATAGTGGGCAGTGGGTACAGGCCATGCGTCTGTTG
AGGGAGATGCAGCGGGAGGGTGCAACCCCCAATGCTGTGAGCTATAATTC
GGCAATCAAAGCCTGCGGAAATTGCGGGCAGTGGGAGGAGGCAATGCATC
TGTTGAGGGAAATGGAGAGGGAAGGTGTAAGTCCCGACATCATGAGCTAC
ACTTCGGCAATCACAGCGTGTCGAAACGGTGGACAATGGGAAGAGGCGGT
GACTTTGTTAAGGGAGATGAAGGCGGAGGGCGTTACCCCCGACGTCGTGA
GCTACAATTCCGTAATCACAGCGTGCGGAAAATGCGGGCAGTGGGAGGAG
GCCATAGGTCTACTGAGGGAAATGTTCAGAGAGGGTGCAACGCCCAATGA
CGTGAGCTACAATTCGGCGATCAAAGCGTGCGGGAACAGTGGGCAATGGG
AGGAGGCCCTGAGCCTGTTGAGAGAGATGCCGAGGGAAGGCATAAGCCCT
GATGTAGTAAGCTACAGCTCGGCGATTACCGCCTGTGGGAACGGCGGGCA
GTGGAAGAAGGCCGTTAGCCTATTGAGAGAAATGCAGAGAGAACGTGTAA
TCCCCAATGTCGCGAGTTATAGCTCAGCGATCAAAGCATGCGGAGATTGT
GGGAAGTGGGAGGAGGCCATGCGCCTGTTGAAGGAGATTCAGAGGAATGG
TGTATCACCTAATGTGGTGTGCTACAACTCCGCCATCACAGCATGCGGAA
AAGCTATGCAATGGGAGGAGGCGATGGGCGTATTGAGGGAGATGCAGAGA
GAGTCTGTGAGCCCCGATGTCGTGAGCTACAGTTCAGCGATCACAGCGTG
CGGACAAAGTGGACAATGGGAGGAGGCCATCGGTCTGTTGAGAGAGATGC
AAAGAGAGGGTGTAACCCCGAACGTGGTGAGTTACAGCTCAGCGATCACA
GCGTGTGGAACCTGCAGGCAGTGGGAGGAGGCAATGCGGCTGTTGAGAGA
GATGCAGAATGAGGGTGTAAGCCCCGATGTCGTCAGCTACAACTCGGCGA
TTGCAGCGTGTGCAAACAGTGGACAATGGGAACAGGCGCTTGGTCTGTTG
AGAGAGATGCAGAAGCAAGGTGTAACCCCCAACGTCGCTAGCTACAACTC
GGCGATCAAAGCGTGTGCAAAGGGCGGGCAGATGGAGGAGGCGATCCGTC
TATTGAGGGAGATGCAGCGGGAGGGTGTAACCCCCGATGTGGTGAGCTAC
AATTCCGCTATTACAGCCTGTGAAGAAGGCGGGCAGTGGGAGGAGGCCAT
GAGTCTGTTGAGGGAGATGGAGAGGCGGGGTGTAACCCCCAATGATGTGA
GCTACAGCTCGGCAGTCATAGCGTGTCGCAACAGCGGACAGTGTGAGGAG
TCCATCAGTCTGCTTAGAGAGATGCGAAGGGAGGGTGCAACAGTCGATAC
CGTCAACAAAAATCGGATATAG
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