mRNA_H-paniculata_contig1574.3330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1574.3330.1
Unique NamemRNA_H-paniculata_contig1574.3330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1574.3330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1574contigH-paniculata_contig1574:23564..23971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.5286453-CDS-H-paniculata_contig1574:23563..238691622929255.5286453-CDS-H-paniculata_contig1574:23563..23869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1574 23564..23869 +
1691480789.6293368-CDS-H-paniculata_contig1574:23563..238691691480789.6293368-CDS-H-paniculata_contig1574:23563..23869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1574 23564..23869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.5466151-UTR-H-paniculata_contig1574:23869..239711622929255.5466151-UTR-H-paniculata_contig1574:23869..23971Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1574 23870..23971 +
1691480789.6421196-UTR-H-paniculata_contig1574:23869..239711691480789.6421196-UTR-H-paniculata_contig1574:23869..23971Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1574 23870..23971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1574.3330.1prot_H-paniculata_contig1574.3330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1574 23564..23869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1574.3330.1

>prot_H-paniculata_contig1574.3330.1 ID=prot_H-paniculata_contig1574.3330.1|Name=mRNA_H-paniculata_contig1574.3330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
IGVTCPHSSCTPVCCFLLGFFSIVIPTRRYQFGELIEYNNGGNVTCRNCA
YVCFACFRLFFSRNDVCAVYSGCIRGMRETTGTFYPSLQSYVILFPRCWR
R*
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mRNA from alignment at H-paniculata_contig1574:23564..23971+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1574.3330.1 ID=mRNA_H-paniculata_contig1574.3330.1|Name=mRNA_H-paniculata_contig1574.3330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig1574:23564..23971+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGCGTCACTTGTCCACATTCATCATGTACACCGGTGTGCTGTTTTTT
ATTGGGCTTTTTTTCGATTGTCATCCCAACTCGACGATACCAATTCGGTG
AACTGATTGAATATAATAATGGTGGTAATGTTACTTGTAGAAATTGTGCC
TACGTTTGTTTTGCCTGCTTCCGTTTGTTTTTTTCTCGCAACGACGTATG
CGCGGTGTATTCCGGCTGTATAAGGGGTATGCGAGAAACGACCGGCACTT
TTTACCCTTCCCTCCAATCGTACGTTATATTGTTTCCTCGTTGTTGGCGC
CGATAGCCACCCATATTAATTGAAAAACGACGAAACAGATTTAATTTGTA
CCGTCAACAGGAACAACCTTATATGTGTTTTTTTTTTTGTGGACTTGGCG
GGGGGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1574:23564..23971+

>mRNA_H-paniculata_contig1574.3330.1 ID=mRNA_H-paniculata_contig1574.3330.1|Name=mRNA_H-paniculata_contig1574.3330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig1574:23564..23971+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGCGTCACTTGTCCACATTCATCATGTACACCGGTGTGCTGTTTTTT
ATTGGGCTTTTTTTCGATTGTCATCCCAACTCGACGATACCAATTCGGTG
AACTGATTGAATATAATAATGGTGGTAATGTTACTTGTAGAAATTGTGCC
TACGTTTGTTTTGCCTGCTTCCGTTTGTTTTTTTCTCGCAACGACGTATG
CGCGGTGTATTCCGGCTGTATAAGGGGTATGCGAGAAACGACCGGCACTT
TTTACCCTTCCCTCCAATCGTACGTTATATTGTTTCCTCGTTGTTGGCGC
CGATAGATTGGCGTCACTTGTCCACATTCATCATGTACACCGGTGTGCTG
TTTTTTATTGGGCTTTTTTTCGATTGTCATCCCAACTCGACGATACCAAT
TCGGTGAACTGATTGAATATAATAATGGTGGTAATGTTACTTGTAGAAAT
TGTGCCTACGTTTGTTTTGCCTGCTTCCGTTTGTTTTTTTCTCGCAACGA
CGTATGCGCGGTGTATTCCGGCTGTATAAGGGGTATGCGAGAAACGACCG
GCACTTTTTACCCTTCCCTCCAATCGTACGTTATATTGTTTCCTCGTTGT
TGGCGCCGATAG
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