mRNA_H-paniculata_contig1573.3325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1573.3325.1
Unique NamemRNA_H-paniculata_contig1573.3325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1573.3325.1 vs. uniprot
Match: D8LRY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.170e-27
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 2 
Query:  740 QVTRIVRITVAGNVFFLVRAACELTVGLSLYRYYKRHHSFDIVFGTRMWTWYVLIKHASEWLILFVMLWILHSPQPAEGSDYGRVEDGTDG 1012
            QVTRIVRITV GNVFF +RA CEL VGL+LY ++K+ HSF++VF + +W WYV++KH SEW+ILFVMLWILH P  AEG      ++G+ G
Sbjct:  206 QVTRIVRITVTGNVFFAIRAVCELAVGLTLYMHFKQTHSFNMVFSSWVWDWYVVVKHVSEWMILFVMLWILHDP--AEGGSSLGSDEGSQG 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1573.3325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRY6_ECTSI4.170e-2761.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1573contigH-paniculata_contig1573:8112..11673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_001320.1
Exons2
Model size1037
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1573.3325.1prot_H-paniculata_contig1573.3325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1573 11518..11673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.1282449-UTR-H-paniculata_contig1573:8111..89561622929255.1282449-UTR-H-paniculata_contig1573:8111..8956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 8112..8956 +
1691480789.382618-UTR-H-paniculata_contig1573:8111..89561691480789.382618-UTR-H-paniculata_contig1573:8111..8956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 8112..8956 +
1622929255.1385508-UTR-H-paniculata_contig1573:11482..115171622929255.1385508-UTR-H-paniculata_contig1573:11482..11517Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 11483..11517 +
1691480789.3918574-UTR-H-paniculata_contig1573:11482..115171691480789.3918574-UTR-H-paniculata_contig1573:11482..11517Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 11483..11517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.1518743-CDS-H-paniculata_contig1573:11517..116731622929255.1518743-CDS-H-paniculata_contig1573:11517..11673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 11518..11673 +
1691480789.4000878-CDS-H-paniculata_contig1573:11517..116731691480789.4000878-CDS-H-paniculata_contig1573:11517..11673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 11518..11673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1573.3325.1

>prot_H-paniculata_contig1573.3325.1 ID=prot_H-paniculata_contig1573.3325.1|Name=mRNA_H-paniculata_contig1573.3325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MWTWYVLIKHASEWLILFVMLWILHSPQPAEGSDYGRVEDGTDGSEDIRG
GG
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mRNA from alignment at H-paniculata_contig1573:8112..11673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1573.3325.1 ID=mRNA_H-paniculata_contig1573.3325.1|Name=mRNA_H-paniculata_contig1573.3325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3562bp|location=Sequence derived from alignment at H-paniculata_contig1573:8112..11673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAAGCAAGAACATAAACAATTGCTGGCATTGACGCTTTTTCCAATGC
GTTGATTTTTATTACTTTTGTGAAGAGTAGCGGGCCGAGCCTTTTACGTT
TTTGTTTTTTTTACTATGCATGAATGAGTCAACGAAACGAAAAAAGCTAG
GAGGATTAGCAAAAAAAAAATCGAAAACAGGAAAAGGGTAGCTGGCGGAC
GGGTACTCGAAAACTTGCTTTCAAAAATGAATTAAACTTTCGAGGTGTGC
GTGTTTATATATCGTTCGTAAAAAAGCTATACATCGGCTACTACTACCAA
GTGTGTACCCGGCTAGTATGCAACTGTTTTCACCGCACGGACGAATGCGA
GTACTCTGAACAATGGTTTAGGCGAAAGGTGAACAATTTAGAAATCATGT
GCGTTTCAGCATGTGCGGGGGGGGGACGCCCTTGCTTGTTCGTTCTAGTA
GTAAATTATGCGCTGCAGTCGTAAGTGGTCCACGGGGTGAGCACACGGAA
TAAATGTGCTCAAGATGATCCTTCAGGCGAATATATTTTTTGTTTTTTCT
CCGTCTAAGCTGTTCGAAGTATTGAATATTTGCATTCGTTCGGCGAGTGA
AGTGTTTTTCAGCGTGCCATTTTCTTGTCCTTTTGTGCTTGCTGGCTGGC
TGGCTTGATTGCTGGCTTGATTGCTGGCTTGTTTACTTGCTTCCTTGTTT
CCTTGTTACCTTGTTTCCTTGCTTGCTTCTCATGTCGAGCAGGTTACGCG
AATTGTGCGAATAACAGTCGCCGGAAATGTCTTTTTTTTGGTACGAGCTG
CTTGTGAGTTGACGGTGGGCTTGTCGCTCTACAGATACTACAAGCGTGAG
TGAAAATTCGCTTTTACCTCTTCTTTTTTTCTTTTTTTTTTCCGATGTGC
GTGAACCGTTCGACGGTTTATTTTGTTTTTGTTTTTGTTGAGTCCTGTTT
AACACTTGGTCAAACATGATGTTTGACAGTCTTTTTGCTTCGTGGTTCAC
GCTTTGTGGTGCCTTGCCCCAGTGCGAGTAGGACCAACGCTGAAGCTAAC
GGTAACCTTAACTCTAACCCCCATCCCCTGGGTATAGTGCGGGTTGGTAG
AGCTCAAATTCGGCGCCTGGTGGCGCCGATCCTAGCAGAAACTGTTATGA
GGCGAAGCTCAGAATCACTTAAACCAGAACGTTCTGATGACTTTCTGGGT
ACACTATTATGCTATGTTAGTGCACCTCAACCATTGTGTTCGACCAAGTG
GTAAATGCTACTGTTTTGGCTTGACTTGGCTTGGCTGGCTTAGGTCGATT
GGTAGGCAAGGGGTCGGGGAGAGTGAAGCGACGCAAGTGACATGAAGCGG
GTAGATGATGGTTCGCTTGTAAAATAGTAGTGTCTTTTGAAGCAAAAAAA
AATAATGTAGCGTATGTCCGTCGGCGGTTTTTATTTTGTTTTATTCGTTG
TCGTTTTTTAACGCGTCGTTGCACTCTGTGCGTGTGAGCACGTGTTCTAC
CGCTGGCTCCGTCAGAGAGGGGTGGGGTGAAGGGGAGAGAGGGTGGGAGA
GGGGAGGAGGGAGGGTAAATACTTCATATTTGAGGGAGTCTAACCGCCTG
GTTCGCATGTATACACAGTTGAACGATACGGCATGACCCATTATAAAAGC
GAGCACTCGACAAAGAGCAATACCCTCATGGCTTGCGAACTTTCCTTCAT
CAATCAATCCGTTTCATGTCATGTCATGATATGCGGTACGTTACAGTAGT
CAGTACTCCATATTTGTATATCTATGCGCAAAATAAACACAGGAAACCCC
TCCCCGAAGCTGATGACTATTTCAACGCACTCATCGTGATGCAGTTTTTG
ACGGTCCCGCGCCGAAAAAGGGAAGGGAGGTGGTTTTTGGTGTGTGTGTA
TGATGGGGGGGTACCGAATTTCGACGGACATACTTGCTTTGACCGGGTTG
AGATCAGACTCCTATGTCGATGAACATATGGTAAATGGTATAGCGGGATC
TTGACGTGTTTTGGTTATCAATATGAATTTAGTATACCAAATGTCAACGC
TAGCTGTAGCAGTATATCAGCCTTTTTTGGCAATATTCACGTACGTCGAG
CGCTGGCACATCAGCTGGAGTGCCGTGTACTTAATTTAGAAGTGACAGAC
TGCAGTACACACATTGGGTCCCTCGAGCGGTGGCAGTTAGCTGCACATTG
TAAACAACATGGTGCCGTAGATTACGCCCAGCGATACAAGATACAGACAG
TAGTGCTGCATGCAGCGTCATAATTGCGGCACACAAGACGTCGCAAGCAC
CTGCATATTATCCCACAATTTCCGTTGCGAACGAGAGCCGCTGCGTGTGT
GGCGTCCTTTTATAGTAACGGCACCCACAGGCACAACCGTAGGCGGTCTG
CTACAATTAATCGTGGCAGTCAGGACATGGCAACATGACTGATATCGTAG
TTGGTAGTTAGGCGTTGGGCTTTCTGGAACAAAGTCGTTTCTTCCTGTCA
TGTACACTTCCATGTGTAGGGGGGTTAATGATGTAATTTTGCTGATAAGT
GTAAGCCTCACAAAACTCAACATGGATACATTGGAGTTATGATATGAAGG
TTAGAGTTATAGGTCAACTGACTGTGGCAAAGTCAGTTGACTACAGTAAT
AAGAATTTCCGTTAGGAATTAAGGTTTGCTTTTTATTTTCATGGTGCCAG
GCGTACAATATTTCATTTTTTACCTACAGTACACAGGCGAGTGATACAGG
GATACTCCCTTGTAAAGGTTGCTGTAATTCATGTCGTGCGTGGTCGAAGA
GGCACGAGAAGTTCCGGTACTTGCTCCCTCACCCCCTTCTCCCTCCCGAG
TGATGGGTAAATCGCAAATAGCTCTGACAGGAACAAAGCCCCGTCCTCCC
GAGGATTCGTGGTTAATGGTCAAATAACTACGACATTCAAAAACATCAGT
ACGCCCCCTTTCCCCCCCCTTCGCGTCACTCGCACCCCTCCTTGGTAAAT
GCGTGTAATAACACGATGGTGCACGAAAAAATGAATTTGGTCCTTCGTGT
GGTTGTCGTAAACAAATCGATCGAGTTTTCTCTATGATTGGTCGTGGAAG
CCTGTGTGACCAATCACGGGAATTAACTGAAAACGCTCGCGGATTGGGTT
ATGCAGGTCGTTACGATACGCATGTTCCACGCGATCGAAACTTGTTTCTT
TTTTCACAACAACCTAAAACGAACAGGAGACGAATAAAGTTCGTTTTTTG
TGCATCGTCGATTCACGGGGGTAACATTTCAATGACATGCTCTCGACCAT
CCTTCCCTCCCTGTCTCTCTGCTATCCCCCTTGTTGCTTGCTTGCTCCCT
CGCCCCGTAAAATACGCACAGGTCACCATTCTTTCGATATCGTATTCGGC
ACCCGCATGTGGACTTGGTACGTCCTGATAAAGCACGCGTCGGAATGGCT
CATCTTGTTCGTAATGCTGTGGATATTGCACAGCCCTCAGCCAGCGGAAG
GCTCAGACTACGGCCGAGTAGAGGATGGCACCGATGGCTCAGAAGACATC
CGTGGGGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1573:8112..11673+

>mRNA_H-paniculata_contig1573.3325.1 ID=mRNA_H-paniculata_contig1573.3325.1|Name=mRNA_H-paniculata_contig1573.3325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig1573:8112..11673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGACTTGGTACGTCCTGATAAAGCACGCGTCGGAATGGCTCATCTT
GTTCGTAATGCTGTGGATATTGCACAGCCCTCAGCCAGCGGAAGGCTCAG
ACTACGGCCGAGTAGAGGATGGCACCGATGGCTCAGAAGACATCCGTGGG
GGTGGGATGTGGACTTGGTACGTCCTGATAAAGCACGCGTCGGAATGGCT
CATCTTGTTCGTAATGCTGTGGATATTGCACAGCCCTCAGCCAGCGGAAG
GCTCAGACTACGGCCGAGTAGAGGATGGCACCGATGGCTCAGAAGACATC
CGTGGGGGTGGG
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