mRNA_H-paniculata_contig1573.3324.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig1573.3324.1
Unique Name	mRNA_H-paniculata_contig1573.3324.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 5.960e-39
Identity = 88/214 (41.12%), Postives = 124/214 (57.94%), Query Frame = 3

Query:  678 STSVSLTPELRGRLNRKT--------VIWTIMDGCPWVVIDDMDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEVQCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQSEHISLATRDFPGTHKENNAQEWIKQVRTEYFGSF-SPFVHPSHVFIGATVDQGGYVVNACKVLGVKILVCRRHRINTSVMWSL 1292
            S+S SL   +  +L++K         VIW  ++  P  +  D  FK  +G +SP+YV ST S   FDK L+ LY   K  ++  L+ +REE    GY+G + G QLD TT+A  E+ T + S +  GS     ++LA R FPGTH  ++   WI+++  EYF  F    V P  VF+  TVDQGG VVNACK LGV ++ C  HR+NT+V+W+L
Sbjct:  185 SSSSSLVNYMVPKLDKKRREMADLRFVIWCCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWAL 398

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.250e-36
Identity = 79/202 (39.11%), Postives = 121/202 (59.90%), Query Frame = 3

Query:  690 SLTPELRGRLNRKTVIWTIMDGCPWVVIDDMDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEVQCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQSEHISLATRDFPGTHKENNAQEWIKQVRTEYFGSF-SPFVHPSHVFIGATVDQGGYVVNACKVLGVKILVCRRHRINTSVMWSL 1292
            ++T   +   +R+ V+W  +D  P  +  D  FK  +G +SPEYV++T + S F++TL+ LY    + V+  L+ +REE    GY+G + G QLD TT A  E+ T + + ++ G      I+LA R FPG+H   + Q WI+++  EYF  F    V PS VF+  TVDQG  ++NAC  LGV ++ C  HR+NT+V+W+L
Sbjct:    4 TMTKARKDAADRRFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWAL 205

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.440e-36
Identity = 79/202 (39.11%), Postives = 121/202 (59.90%), Query Frame = 3

Query:  690 SLTPELRGRLNRKTVIWTIMDGCPWVVIDDMDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEVQCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQSEHISLATRDFPGTHKENNAQEWIKQVRTEYFGSF-SPFVHPSHVFIGATVDQGGYVVNACKVLGVKILVCRRHRINTSVMWSL 1292
            ++T   +   +R+ V+W  +D  P  +  D  FK  +G +SPEYV++T + S F++TL+ LY    + V+  L+ +REE    GY+G + G QLD TT A  E+ T + + ++ G      I+LA R FPG+H   + Q WI+++  EYF  F    V PS VF+  TVDQG  ++NAC  LGV ++ C  HR+NT+V+W+L
Sbjct:  199 TMTKARKDAADRRFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWAL 400

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.630e-34
Identity = 79/205 (38.54%), Postives = 119/205 (58.05%), Query Frame = 3

Query:  684 SVSLTPELRGRLNRKTVIWTIMDGCPWVVIDDMDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEVQCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQS-EHISLATRDFPGTHKENNAQEWIKQVRTEYFGSF-SPFVHPSHVFIGATVDQGGYVVNACKVLGVKILVCRRHRINTSVMWSL 1292
            S  +  + R   + + VIW  ++  P  +  D  FK  VG +SP+YV +T + + F+K L+ALYD  K  ++  L+ +REE    GY G + G  LD TT+AN E+ T + S ++ G       ++LATR FPG+H   + + WI+ +  EYF     P V P  VF+G TVDQG  +VNA   LGV ++ C  HR+N++V+W+L
Sbjct:    2 SRKMDKKQRDLADLRYVIWCCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWAL 206

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.200e-34
Identity = 76/188 (40.43%), Postives = 112/188 (59.57%), Query Frame = 3

Query:  732 VIWTIMDGCPWVVIDDMDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEVQCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQSEHISLATRDFPGTHKENNAQEWIKQVRTEYFGSF-SPFVHPSHVFIGATVDQGGYVVNACKVLGVKILVCRRHRINTSVMWSL 1292
            VIW  ++  P  +  D  FK  VG +SP+YV +T + + F+K L+ L+D  +  V+  L++VREE    GY G + G QLD TT+A  E+ T + S ++ G      +SLATR FPG+H  ++ + WI+ +  EYF       V    VF+  TVDQG  VVNAC  LGV ++ C  HR+N++V+W+L
Sbjct:   22 VIWCCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWAL 209

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 5.010e-33
Identity = 75/188 (39.89%), Postives = 111/188 (59.04%), Query Frame = 3

Query:  732 VIWTIMDGCPWVVIDDMDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEVQCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQSEHISLATRDFPGTHKENNAQEWIKQVRTEYFGSF-SPFVHPSHVFIGATVDQGGYVVNACKVLGVKILVCRRHRINTSVMWSL 1292
            +IW  ++  P  +  D  FK  VG +SP+YV +T + + F+K L+ L+D  K  V+  L++VREE    GY G + G QLD TT+A  E+ T + S ++ G      +SLATR FPG+H  ++ + WI+ +  EY        V    VF+  TVDQG  VVNAC  LGV ++ C  HR+N++V+W+L
Sbjct:   22 MIWCCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWAL 209

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.340e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 2

Query: 2435 KAPAIV-SHQFGLLQYWSDAAKPRLDNDGNVLKQPRFPLLSMLTRVFHSINSTSCQSERDFSFFPITMSKFRLSMTPERVGKMMF 2686
            K PA V +  + +L +W DA  PRLD  GNV+   +FP+LSML RV+  I+STSCQSER+FS      +  R +M P+RV  +MF
Sbjct:  165 KLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMF 249

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.280e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 2

Query: 2435 KAPAIV-SHQFGLLQYWSDAAKPRLDNDGNVLKQPRFPLLSMLTRVFHSINSTSCQSERDFSFFPITMSKFRLSMTPERVGKMMF 2686
            K PA V +  + +L +W DA  PRLD  GNV+   +FP+LSML RV+  I+STSCQSER+FS      +  R +M P+RV  +MF
Sbjct:  167 KLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMF 251

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.450e-11
Identity = 86/335 (25.67%), Postives = 132/335 (39.40%), Query Frame = 1

Query: 1291 LGIAGSAKKCKNEPVKNLTPHIAALVGIFSHSAVNNDALRAIQQVLD*RQAERVGEAEAGRTSDERRLSAYPAAEVCYER*MQ**RRGG*RHRQQRRQRY*QMR**WEEQAHGRR*QRDSKDR*AAVSGAQHSSSQ*YPPICEYLRLNPDMPRRAPSPMDWLVVKEVFSILETLKHVNVAIQGGKDSQLSCAIFLCDELCSILSLDE-----------------VEIIDWRSRRNATVDIADENKMVKVDDLMDDSQTVRRVALEQLQMRQVDSAMADAELVALFLDPRYKSLSVDVCGNGDDEGRLRAGAREALTKISCTMNEAGGPTRPAAAP 2244
            LGIAGSA  C+N  +  L   +AALVG+FS SAVNN  L+ +Q++          E +  R  +  R +     ++                                              R   +        +  P I    +L     +R  S  +W+V  EV S+L  +  + + IQG +D+ +S A+FL  E+  +L  DE                 +++I      N         + + V+DL  ++Q VR+V LE ++ + V  A+   E ++  LDPR K L     GNGD++  LR  A   L K   T      P  PA AP
Sbjct:   64 LGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNN-MLKELQRL----------ETDLHRIYELMRRNDTSQFKMM--------------------------------------------GRLLTLKKPISEYFRRLPQIPSNKQL-----KRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLK-DETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDED--LRIAAEADLKKFIATFTAESVPPTPAPAP 335

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BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.080e-9
Identity = 76/287 (26.48%), Postives = 116/287 (40.42%), Query Frame = 1

Query: 1291 LGIAGSAKKCKNEPVKNLTPHIAALVGIFSHSAVNNDALRAIQQVLD*RQAERVGEAEAGRTSDERRLSAYPAAEVCYER*MQ**RRGG*RHRQQRRQRY*QMR**WEEQAHGRR*QRDSKDR*AAVSGAQHSSSQ*YPPICEYLRLNPDMPRRAPSPMDWLVVKEVFSILETLKHVNVAIQGGKDSQLSCAIFLCDELCSILSLDEVEIIDWRSRRNATVDIADEN---KMVKVDDLMDDSQTVRRVALEQLQMRQVDSAMADAELVALFLDPRYKSLSVDVCGNG 2142
            LGIA  AK  KN  +  L   +AA+VG+FSHSAVNND L+ +Q++                             E  + R  +  RR   R               W  Q           DR  A+            PI E+ +  P   R+  +P +W ++ EV S+L  +  + + +QG  D+ +  A+F+  E+  +L  D   I   R      V + +E        V DL  ++  V  V L+ ++ + V SA   AE ++  +DPR K L  D   NG
Sbjct:   49 LGIA--AKGRKNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRL-----------------------------EEGFSRIYELLRRNDTRW--------------WTSQL-------KMMDRALALKK----------PISEFFKKYPQNDRKL-TPNEWTIINEVCSLLADVSEITIRVQGSVDTHIGQAMFIIHEVIEMLGEDTHPI---RQPNATVVPVPEEGIPTDDTPVTDLTAEAPCVLEVLLDVMRKKGVGSAQVAAERLSALMDPRRKLLGSDQLENG 269

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1573.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5JRT6_9PHAE	5.960e-39	41.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTB8_9PHAE	1.250e-36	39.11	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	5.440e-36	39.11	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5JXV5_9PHAE	3.630e-34	38.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQI6_9PHAE	5.200e-34	40.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZU3_9PHAE	5.010e-33	39.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L256_9PHAE	2.340e-13	48.24	Dimer_Tnp_hAT domain-containing protein (Fragment)...	[more]
A0A6H5L902_9PHAE	4.280e-13	48.24	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5KDJ6_9PHAE	1.450e-11	25.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAS2_9PHAE	2.080e-9	26.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1573	contig	H-paniculata_contig1573:943..6643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	4089
Cds size	921
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1573.3324.1	prot_H-paniculata_contig1573.3324.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig1573 1422..3590 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929255.0259502-UTR-H-paniculata_contig1573:942..1421	1622929255.0259502-UTR-H-paniculata_contig1573:942..1421	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1573 943..1421 +
1691480789.3287244-UTR-H-paniculata_contig1573:942..1421	1691480789.3287244-UTR-H-paniculata_contig1573:942..1421	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1573 943..1421 +
1622929255.0741942-UTR-H-paniculata_contig1573:3590..3897	1622929255.0741942-UTR-H-paniculata_contig1573:3590..3897	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1573 3591..3897 +
1691480789.3647342-UTR-H-paniculata_contig1573:3590..3897	1691480789.3647342-UTR-H-paniculata_contig1573:3590..3897	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1573 3591..3897 +
1622929255.0905528-UTR-H-paniculata_contig1573:4261..6643	1622929255.0905528-UTR-H-paniculata_contig1573:4261..6643	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1573 4262..6643 +
1691480789.3742425-UTR-H-paniculata_contig1573:4261..6643	1691480789.3742425-UTR-H-paniculata_contig1573:4261..6643	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1573 4262..6643 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929255.0398967-CDS-H-paniculata_contig1573:1421..1582	1622929255.0398967-CDS-H-paniculata_contig1573:1421..1582	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1573 1422..1582 +
1691480789.3393474-CDS-H-paniculata_contig1573:1421..1582	1691480789.3393474-CDS-H-paniculata_contig1573:1421..1582	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1573 1422..1582 +
1622929255.0519264-CDS-H-paniculata_contig1573:2576..3057	1622929255.0519264-CDS-H-paniculata_contig1573:2576..3057	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1573 2577..3057 +
1691480789.3501368-CDS-H-paniculata_contig1573:2576..3057	1691480789.3501368-CDS-H-paniculata_contig1573:2576..3057	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1573 2577..3057 +
1622929255.0623183-CDS-H-paniculata_contig1573:3311..3590	1622929255.0623183-CDS-H-paniculata_contig1573:3311..3590	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1573 3312..3590 +
1691480789.3575134-CDS-H-paniculata_contig1573:3311..3590	1691480789.3575134-CDS-H-paniculata_contig1573:3311..3590	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1573 3312..3590 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig1573:943..6643+
coding sequence from alignment at H-paniculata_contig1573:943..6643+

protein sequence of mRNA_H-paniculata_contig1573.3324.1

>prot_H-paniculata_contig1573.3324.1 ID=prot_H-paniculata_contig1573.3324.1|Name=mRNA_H-paniculata_contig1573.3324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
MQSGDEANLERRHAHLEAFKQFPPGDIEGGPSGEQTFQGRQREERHCTRW
LHRDVHHTGEKGYFGNSTSVSLTPELRGRLNRKTVIWTIMDGCPWVVIDD
MDFKTLVGEISPEYVSSTPSFSVFDKTLNALYDEAKADVIKTLKNVREEV
QCAGYTGGYCGFQLDSTTIANGEFCTASASVIRVGSLQSEHISLATRDFP
GTHKENNAQEWIKQVRTEYFGSFSPFVHPSHVFIGATVDQGGYVVNACKV
LGVKILVCRRHRINTSVMWSLRNCRKRQEVQERACQEPHAPHRSSGGNIQ
SFCGKQ*

mRNA from alignment at H-paniculata_contig1573:943..6643+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig1573.3324.1 ID=mRNA_H-paniculata_contig1573.3324.1|Name=mRNA_H-paniculata_contig1573.3324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5701bp|location=Sequence derived from alignment at H-paniculata_contig1573:943..6643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAACATAATGTAGTGGATGGTGGTATGCACGGTACGATAACGGTACT
ATTACTAATTATTACTTCGTAGTATAGTACAGGGACGCAACTGTAATGAG
CAAGTCTCATGGCGTCACATACGTCCATATGCGAGGGCCGTTCATCCAGC
GCGCTGCAATCAACGCCGTCAACGCACACAGCGGCTGCATCAGCGGACGA
AGCAACGCCGCAGCCCCAACCCAAGCCACAGCCACAGCAGTCTTCGTGTG
GGCGACGCACGCACATGCATACATTTCTTCAGTTTACAGGCAACGGCGAG
TCTGGCACGAGACTCGCGTCCACTTCATCGGTCGTATCAGGGCAACGAGT
GAAGTTGGACAGGGCAAAGAGTAGTGACTTGAGGACGTTGCCTGCATGGC
GCTACTACAGTAAGTACAGCATCCCGAAGAGCAACGGTAACAACGTCTGC
TGCAATGTGCGTGGTGATGACGGGAAACCATGCAATCAGGAGATGAAGCA
AACTTGGAAAGACGGCACGCCCACCTTGAAGCATTTAAACAATTCCCACC
CGGGGATATCGAGGGAGGTCCTAGCGGCGAGCAGACATTCCAGGGACGCC
AAAGAGAAGAAAGGCACTGCACTCGGTGGTTACATCGCGAGTGAGTTATT
CGTGGATGTTTTATCGGTTCCGACTTCGCGCCTCATTTGTCAGCATGCAG
TACAGTAGTGGCTGTAAGGTGTGGTCGTGATCATTTTTTGTGTTTTGTAC
TTTTGGCAGTGAGTACAGCTACAGCTACAGTATCTGTACGATACAGTCAG
TAAACAGTAAAGAGTCTGTCCTACTTATGACATGATATTGGTGAAATGGA
GGACAAAAGTTTTTTCGAGAAGAGCCTGAAATCCATACTTTTTTCACGCG
ACACGTTTCAGCACGCTCAATTCGACGAGTTAGACTGCAGTGGCTCAAAG
AAACGGCTTTGCTCATGGCAACACGCAGATACTTGCTGTACGTTCATCGG
TAGTAGTCTCGGTGGCGAGTTATAGCAGATTGAAAGGCCTGGCTGGGCTG
CTGCAGGCAAGAGCACCGATTCAAGAAATCCGCGCCGACTGATTTAATCG
GTTTTCCATCCATTCTTGTCACTGTCATAAATTCCGAACCATGGATCGGA
TTCAGTGAGATGAGGTATTGGCATCATCTGGTGACGGGGGGCTTTTGATT
GGGCTATCAACCAACCAAATCGGTCATCTTGGTCGGAAACTACACCAGGC
GGAAAAATCGGTGGTATGGACAAAAAGATATGGAGCTCGTTCTCCAAATA
AAGTTTGTTCTCTACTTGACCACTGTCGTAGTTAGTGTTGTGTCCATTTG
TTCGTTATTGTTCGAAGTATGTGACAGTAGACGGCACAGACAGTAGAGAC
AGTAGCATTTTAGTGTTTTTTATGTTTGCTTTTTGTTTTTTGTATGTTGA
ACTGAATTGTGTGCCTATGTGCTTGTGGCATTTCATGTGTCCGGGTGTCA
GTACACACCGATGCTAGTCTGTTTCTCGTACGCGTGCATCGTTGACGATT
GCGATGTACGACAGCAATATGCACAATATAATAGTCACAAATTTCATGTA
CGACCGTGAATCGTCCTCCTTGCCTCTTTTGCAGCGTCCATCACACCGGG
GAGAAGGGATATTTCGGCAATAGTACCTCCGTGTCCCTCACGCCTGAACT
GAGGGGCCGTCTCAATCGGAAAACCGTCATTTGGACCATCATGGATGGCT
GTCCTTGGGTAGTCATCGATGACATGGACTTTAAGACACTCGTCGGAGAA
ATTTCGCCCGAGTACGTGAGCTCAACGCCTTCATTCTCTGTCTTTGACAA
GACGCTGAATGCTCTGTATGACGAGGCGAAGGCAGACGTCATTAAGACGC
TGAAGAATGTGCGGGAAGAGGTTCAATGCGCCGGGTACACGGGAGGGTAC
TGCGGGTTTCAACTAGACTCTACAACTATTGCCAATGGAGAGTTTTGCAC
AGCGTCTGCGTCGGTAATCAGGGTCGGCAGCCTCCAGTCTGAGCATATTA
GCCTGGCGACAAGAGATTTCCCTGGTACGCACAAGGAGAACAACGCCCAG
GAGTGGATAAAACAGGTGCGCCTGATGCAAACGTTGAGGGAGGAGGGCAG
AGGAAATTCGACGTCATCTTTCAATTGCTACAAGCCTTTCTCTTTCTGCT
GTTTGTTCTCTGTTTTGTAGATGATTCGTTCGAGGCTTTGGACCTGCGGT
ATATTTTACATTTCTTATTCCCCTATTTCTTATTTTATATACAAATATTT
TCTCCTAGTTAATGTAGAATCGAACTGTTGATGTTATTGTTCTGTTCATT
CCTTCGTGCTAACCTGCAGGTGAGAACGGAGTACTTTGGATCTTTTAGTC
CATTTGTGCATCCCTCTCACGTCTTCATCGGGGCAACGGTCGACCAAGGA
GGTTACGTCGTTAACGCATGCAAGGTATTGGGCGTAAAGATCTTGGTGTG
CAGAAGACATCGTATCAACACTTCGGTGATGTGGTCTCTTAGGAATTGCC
GGAAGCGCCAAGAAGTGCAAGAACGAGCCTGTCAAGAACCTCACGCCCCA
CATCGCAGCTCTGGTGGGAATATTCAGTCATTCTGCGGTAAACAATGATG
CTCTTCGCGCCATCCAGCAGGTTTTGGATTGAAGACAGGCAGAAAGAGTT
GGAGAAGCTGAGGCTGGACGCACAAGTGATGAACGACGATTATCTGCGTA
CCCAGCCGCCGAAGTCTGCTACGAGAGATGAATGCAGTGATGAAGACGAG
GAGGGTGAAGACACCGACAGCAACGGCGACAGAGGTATTGACAGATGAGG
TAGTAATGGGAAGAGCAAGCGCACGGAAGGCGATGACAACGAGACAGCAA
GGATAGGTAGGCGGCAGTTAGCGGTGCTCAACACAGCTCGTCGCAGTGAT
ATCCGGTGAGATATTTTATTTGGGTCTTTGGGGTCAATAGCTAATAGTGA
ATATAATTAATTCTATGCAACTACTTCGTATCTCATTTCCCTTTCCAATG
ACACCCGTGCACTGCCGTTTGCGTTTTCACTGAATGTTCATCTTATTTTC
ACATTATCGCTCTTTACGGGCCTATCTTAATGAGCCCGCTGAATCCTCAA
TTATCTAGGCCTTGCTTTCTTGTTTTTTATTACTAGACGCAAGACCAGTA
ATAAAGCACCATACCAAACAGGTAACATGTAAGTTGATATTGCCCCTTGT
TGCCCTCCCTTTCGCGATTGGTGGGGTTCACAATTCACCTTTCTGTCACG
CATGCTTGTGCTGGAGGAGCCAATCTGCGAGTATCTGCGCTTGAATCCTG
ACATGCCCCGGCGTGCCCCCTCGCCAATGGACTGGCTTGTCGTCAAGGAG
GTTTTCAGCATTCTGGAGACCTTGAAGCACGTCAACGTTGCCATCCAAGG
AGGAAAAGACAGCCAGCTGAGTTGCGCGATTTTCCTCTGTGACGAGCTAT
GCTCTATCCTGAGTCTTGATGAAGTGGAGATCATAGACTGGAGGAGCCGT
CGCAATGCCACTGTCGATATCGCGGACGAGAACAAGATGGTCAAAGTCGA
TGACCTCATGGACGATAGCCAGACTGTGCGACGGGTCGCTTTGGAGCAGC
TGCAGATGCGCCAGGTGGATAGTGCCATGGCTGACGCGGAGTTGGTCGCC
CTCTTCTTGGACCCACGCTACAAGTCGCTGTCTGTTGATGTCTGTGGAAA
TGGTGACGATGAGGGCCGCCTGAGAGCGGGAGCTCGCGAAGCTTTGACAA
AGATCAGTTGCACGATGAATGAAGCCGGGGGACCTACCCGCCCGGCAGCT
GCCCCCACTGCTCCAACCCGCGAAAGTGGCAGGCAAGCTTCCCCCAAACC
TCCCCCGGCAAAGCGTGCGAAGAGTTTATTCGAGGGGCGCCGGGCTGCAC
GAGAGTAGGAAGCAGCCAAGAAGGCTGCCGAGGCGCAGAAGCGGCCACCT
TCAACCGTGGTATCGCGTATGGAGGCGGAAATCGCAGAGTATGGACAAGG
CGCCTGCTATCGTGAGCCATCAATTTGGCTTGCTGCAGTACTGGAGTGAT
GCAGCAAAACCGAGGCTTGATAATGACGGCAATGTGCTGAAACAGCCGAG
ATTCCCTCTCCTGTCCATGTTAACAAGGGTCTTCCATAGCATCAACAGTA
CAAGCTGCCAATCCGAGCGCGACTTTTCATTTTTTCCCATAACCATGAGC
AAATTCAGGCTCAGCATGACGCCAGAGCGTGTTGGCAAGATGATGTTTTG
AAGCTGAACTTTGAGCGCATCTCAGAAGTGAGGCGGGTTTGCAAAGGTTG
GACGGAATGAAGGCGGTACAGAAAAGGGGGCGGATGCTGGCTGCCGAGGC
CCAGGCAGCAAAGGCGGGGGAAGTGATCGAAGTGATGGACTAGGGAGCCC
GTAACTATGACCTTACGAGGGAGAAGCTAGCATTGGTGATTTAGGAGGGT
GGTGCATCGGGTACGGCGCTGTAGGGCATCGCCAGTGATTGTACATTTTG
ATTTAGATGCCTCGTTGTCCGTGTTGTTGGTTGTTGTTCTTTTTACTCTC
TCTCTCTATTTTTTTTTTGTTTATCCTTTTGTATTTGGTTCCTGTTTAAA
AAACAGACAAACTTGTTTCTCTTGCTGTTGCAGTAGCATTCAATACACAA
TATGTACGGTGAAGGCATGTATAATATGTAGTATAATGATATAATATGAA
GTATTCAGTAGTAGTATTTCACAACGCCACCACAATTCATGATCCACAAA
ACACCGGATCATGTGAAGAGAGAATGAGATTTGTGGATGGCTGCCAGCTA
GAGGTGCAAATATTTTTTTCCTCCGAAACATTTTAGGCACTTCGGAGAGA
GATAGATTATGATGCCAGGATTAATAATTGTCGTTTGTTACAGTAATATA
ATCTATCTTGAGCATGCAATATTTTGTTGTCGCACTGATGATCGTAGTAG
CGTGTCTTCCTCATCAGCGCTGGCCATTGAAGGTGTGATGAACGAGGATC
TTCGACATGGACGAAAGGGTAAGCTTGGGGTATTTATTGGCCTCGTAGGA
TGCAAAGCATTTTCCGTATGATACGAGAACGTGAAATGGTTCCATTTTCA
GAACTCACAAGAGTTTCTCACATCTTATACAGTATTTGAATACTCTAACT
TTTCCAATATTCGTACAACATGTAATTTTGATCAGAAAGCAGTATATTTG
AGTGTTTATGTCACATATTTAGATTAATTTAAACGTTGGACGCTTCGGAT
ATGCCGATATTTTTTGTAAAGACAACGAGTCTGAGTCTTCGATGGAAAGA
AATGTTTTGCTTGTCAACCTGAAAGCAAGAACTCTTACGCATGTGCGTCA
TGTGTGGTATGTATTTTATTGTGTCTTTGAGATCAGGCCTCTGCTCCTTG
GAGGATGCGTTGTCAGCCTCGAACTCGCAGAGGGTAGGTAGTGCACGATA
CGCGTTGTCGTGTACACCAGGCTATACTCGGGAGTGAGGATCGACTTGCT
TGTTGGGATTGAAGTTTCGTTGAATTTGAATGGAATGCTTCGGAAATGGT
GGTAGCGAAAGGCACTTTCCCTGCGCATTTTCCGTGCACACCGAGGTATG
AAAAGGTTTCCAAATTCATTGTGCAGAGTAAATAGCAGTGAGATAGACAC
G

Coding sequence (CDS) from alignment at H-paniculata_contig1573:943..6643+

>mRNA_H-paniculata_contig1573.3324.1 ID=mRNA_H-paniculata_contig1573.3324.1|Name=mRNA_H-paniculata_contig1573.3324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig1573:943..6643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATCAGGAGATGAAGCAAACTTGGAAAGACGGCACGCCCACCTTGA
AGCATTTAAACAATTCCCACCCGGGGATATCGAGGGAGGTCCTAGCGGCG
AGCAGACATTCCAGGGACGCCAAAGAGAAGAAAGGCACTGCACTCGGTGG
TTACATCGCGAATGCAATCAGGAGATGAAGCAAACTTGGAAAGACGGCAC
GCCCACCTTGAAGCATTTAAACAATTCCCACCCGGGGATATCGAGGGAGG
TCCTAGCGGCGAGCAGACATTCCAGGGACGCCAAAGAGAAGAAAGGCACT
GCACTCGGTGGTTACATCGCGACGTCCATCACACCGGGGAGAAGGGATAT
TTCGGCAATAGTACCTCCGTGTCCCTCACGCCTGAACTGAGGGGCCGTCT
CAATCGGAAAACCGTCATTTGGACCATCATGGATGGCTGTCCTTGGGTAG
TCATCGATGACATGGACTTTAAGACACTCGTCGGAGAAATTTCGCCCGAG
TACGTGAGCTCAACGCCTTCATTCTCTGTCTTTGACAAGACGCTGAATGC
TCTGTATGACGAGGCGAAGGCAGACGTCATTAAGACGCTGAAGAATGTGC
GGGAAGAGGTTCAATGCGCCGGGTACACGGGAGGGTACTGCGGGTTTCAA
CTAGACTCTACAACTATTGCCAATGGAGAGTTTTGCACAGCGTCTGCGTC
GGTAATCAGGGTCGGCAGCCTCCAGTCTGAGCATATTAGCCTGGCGACAA
GAGATTTCCCTGGTACGCACAAGGAGAACAACGCCCAGGAGTGGATAAAA
CAGCGTCCATCACACCGGGGAGAAGGGATATTTCGGCAATAGTACCTCCG
TGTCCCTCACGCCTGAACTGAGGGGCCGTCTCAATCGGAAAACCGTCATT
TGGACCATCATGGATGGCTGTCCTTGGGTAGTCATCGATGACATGGACTT
TAAGACACTCGTCGGAGAAATTTCGCCCGAGTACGTGAGCTCAACGCCTT
CATTCTCTGTCTTTGACAAGACGCTGAATGCTCTGTATGACGAGGCGAAG
GCAGACGTCATTAAGACGCTGAAGAATGTGCGGGAAGAGGTTCAATGCGC
CGGGTACACGGGAGGGTACTGCGGGTTTCAACTAGACTCTACAACTATTG
CCAATGGAGAGTTTTGCACAGCGTCTGCGTCGGTAATCAGGGTCGGCAGC
CTCCAGTCTGAGCATATTAGCCTGGCGACAAGAGATTTCCCTGGTACGCA
CAAGGAGAACAACGCCCAGGAGTGGATAAAACAGGTGAGAACGGAGTACT
TTGGATCTTTTAGTCCATTTGTGCATCCCTCTCACGTCTTCATCGGGGCA
ACGGTCGACCAAGGAGGTTACGTCGTTAACGCATGCAAGGTATTGGGCGT
AAAGATCTTGGTGTGCAGAAGACATCGTATCAACACTTCGGTGATGTGGT
CTCTTAGGAATTGCCGGAAGCGCCAAGAAGTGCAAGAACGAGCCTGTCAA
GAACCTCACGCCCCACATCGCAGCTCTGGTGGGAATATTCAGTCATTCTG
CGGTAAACAATGAGTGAGAACGGAGTACTTTGGATCTTTTAGTCCATTTG
TGCATCCCTCTCACGTCTTCATCGGGGCAACGGTCGACCAAGGAGGTTAC
GTCGTTAACGCATGCAAGGTATTGGGCGTAAAGATCTTGGTGTGCAGAAG
ACATCGTATCAACACTTCGGTGATGTGGTCTCTTAGGAATTGCCGGAAGC
GCCAAGAAGTGCAAGAACGAGCCTGTCAAGAACCTCACGCCCCACATCGC
AGCTCTGGTGGGAATATTCAGTCATTCTGCGGTAAACAATGA