mRNA_H-paniculata_contig15726.3323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15726.3323.1
Unique NamemRNA_H-paniculata_contig15726.3323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: D7FVE7_ECTSI (Glutamate synthase (NADH/NADPH-dependent) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVE7_ECTSI)

HSP 1 Score: 427 bits (1097), Expect = 6.540e-146
Identity = 201/215 (93.49%), Postives = 210/215 (97.67%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVSSPYL 645
            ARCMDCGTPFCQTHTGCPI+NLIPEWNELVFKGAWRDAI++LHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERA+EEGWVVPRIPTHRTGMNVAVVGSGPAGLAAAD LNQMGHKVTVYEREDR+GGLLMYGIPNMKLDKDTVKRR+DLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGR++   + 
Sbjct:  105 ARCMDCGTPFCQTHTGCPIHNLIPEWNELVFKGAWRDAIENLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAFEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADQLNQMGHKVTVYEREDRVGGLLMYGIPNMKLDKDTVKRRIDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRELKGVHF 319
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A836CI68_9STRA (Glutamate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI68_9STRA)

HSP 1 Score: 407 bits (1046), Expect = 3.330e-138
Identity = 191/210 (90.95%), Postives = 202/210 (96.19%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDV 630
            ARCMDCGTPFCQTHTGCPI+NLIPEWN+LVFKGAWRDAID LHKTNNFPEFTGRVCPAPCEGACVAGLIDSP+TIK+IEYSIIERAWEEGWV PRIP +RTGMNVAVVGSGPAGLAAAD LNQ GHKVTVYEREDRIGGLLMYGIPNMKLDKDTV+RRVDLLAEEGIEFVT ANIG D+DVND+RA+ DALVLTVGSTKPRDLPVPGR++
Sbjct:  103 ARCMDCGTPFCQTHTGCPIHNLIPEWNDLVFKGAWRDAIDRLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPITIKNIEYSIIERAWEEGWVTPRIPEYRTGMNVAVVGSGPAGLAAADCLNQKGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVQRRVDLLAEEGIEFVTNANIGPDIDVNDLRAANDALVLTVGSTKPRDLPVPGREL 312
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A7S3Y096_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y096_HETAK)

HSP 1 Score: 389 bits (999), Expect = 1.970e-130
Identity = 174/215 (80.93%), Postives = 198/215 (92.09%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVSSPYL 645
            ARCMDCGTPFCQTHTGCP+NNLIPEWNELV+KG WRDA D LHKTNNFPEFTGRVCPAPCEG CVAGL+D P+TIK+IEYSI++RAWEEGW+ PR+P  RTGM+VAVVGSGPAGLAAAD LNQMGHKVTVYER DR+GGLLMYGIPNMKL+K+TV+RRV LL EEGIEFVTGAN+GVDVDVND+R++ DALVLT+GST+PRDLP+PGR++   + 
Sbjct:  154 ARCMDCGTPFCQTHTGCPVNNLIPEWNELVYKGQWRDANDRLHKTNNFPEFTGRVCPAPCEGGCVAGLVDEPITIKNIEYSIVDRAWEEGWIAPRVPPFRTGMSVAVVGSGPAGLAAADQLNQMGHKVTVYERADRVGGLLMYGIPNMKLEKETVERRVQLLREEGIEFVTGANVGVDVDVNDLRSANDALVLTIGSTQPRDLPIPGRELQGVHF 368
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A7S2HN51_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HN51_9STRA)

HSP 1 Score: 375 bits (963), Expect = 2.810e-126
Identity = 173/211 (81.99%), Postives = 194/211 (91.94%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVS 633
            ARCMDCGTPFCQTHTGCP+NNLIPEWN+LV+K  W++AID LHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIK++EYSIIERAWEEGWVVPRIP +RTG++VAVVGSGPAGLAAAD LNQMGHKVTVYERED++GGLL YGIP MKL+K+ V RRVDLLAEEGIEF+TGA IGVD+DVN +RA+ DALVL +GST PRDLP+  RD +
Sbjct:   58 ARCMDCGTPFCQTHTGCPVNNLIPEWNDLVYKDQWQEAIDRLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKNMEYSIIERAWEEGWVVPRIPKYRTGLSVAVVGSGPAGLAAADQLNQMGHKVTVYEREDKVGGLLTYGIPEMKLEKEKVFRRVDLLAEEGIEFITGAEIGVDLDVNVLRANVDALVLAIGSTVPRDLPLENRDAT 268
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A7S2Q1R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1R0_9STRA)

HSP 1 Score: 372 bits (955), Expect = 4.240e-126
Identity = 171/215 (79.53%), Postives = 190/215 (88.37%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVSSPYL 645
            ARCMDCGTPFCQTHTGCP+NNLIPEWN LV+ G W DAI+ LHKTNNFPEFTGRVCPAPCEGACVAGL+D P+TIK IEYSI++ AW+EG + PRIP  RTGM VAVVGSGPAGLAAAD LNQMGHKVTV+ER DRIGGLLMYGIPNMKL+KDTV RRV+LL EEGIEFVT ANIG +VDVN++RA+ DAL LT+GSTKPRDLPVPGRD+   + 
Sbjct:  112 ARCMDCGTPFCQTHTGCPVNNLIPEWNNLVYNGQWSDAIERLHKTNNFPEFTGRVCPAPCEGACVAGLVDQPITIKDIEYSIVDNAWKEGLITPRIPKERTGMTVAVVGSGPAGLAAADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLEKDTVDRRVNLLREEGIEFVTNANIGQNVDVNELRANFDALTLTLGSTKPRDLPVPGRDLKGVHF 326
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A1Z5JPW8_FISSO (Glutamate synthase (NADPH/NADH) small chain n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPW8_FISSO)

HSP 1 Score: 373 bits (957), Expect = 1.620e-124
Identity = 170/210 (80.95%), Postives = 192/210 (91.43%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDV 630
            ARCMDCGTPFCQTH GCP+NNLIPEWN LV+ G W DAID LHKTNNFPEFTGRVCPAPCEG+CVAGL+D+PVTIK+IEYSI++RAW+EG + PRIP +RTGM VAVVGSGP+GLAAAD LNQMGHKVTVYER DRIGGLLMYGIPNMKL+KDTV RRV+LL EEGIEFVT ANIG +VD+N++RA+ DAL+L VGSTKPRDLPVPGR++
Sbjct:  111 ARCMDCGTPFCQTHAGCPVNNLIPEWNNLVYNGQWEDAIDRLHKTNNFPEFTGRVCPAPCEGSCVAGLVDAPVTIKNIEYSIVDRAWKEGLITPRIPENRTGMTVAVVGSGPSGLAAADQLNQMGHKVTVYERADRIGGLLMYGIPNMKLEKDTVDRRVNLLREEGIEFVTNANIGQNVDINELRANVDALILCVGSTKPRDLPVPGREL 320
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: I2CNZ7_NANGC (Glutamate synthase (NADPH/NADH) small chain n=2 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNZ7_NANGC)

HSP 1 Score: 372 bits (954), Expect = 3.220e-124
Identity = 168/211 (79.62%), Postives = 192/211 (91.00%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVS 633
            ARCMDCGTPFCQTHTGCP+NNLIPEWNELV+KG WR+AID LHKTNNFPEFTG VCPAPCEG CVAGL+D PVTIK+IEY+I+ERAWEEGW++PRIP +R+GM+VAVVGSGP+GLAAAD LNQMGHKVTVYEREDRIGGLLMYGIPNMKLDK+ V RRVD+L EEGIEFVTG ++G D+ + D+RA+ DALVLT+GST PRDL VP R+ +
Sbjct:  111 ARCMDCGTPFCQTHTGCPVNNLIPEWNELVYKGQWREAIDRLHKTNNFPEFTGLVCPAPCEGGCVAGLVDKPVTIKNIEYAIVERAWEEGWIIPRIPQYRSGMSVAVVGSGPSGLAAADCLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKEKVLRRVDMLREEGIEFVTGTHVGKDLAIEDLRANVDALVLTLGSTVPRDLRVPNREAN 321
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A7S4RRN9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RRN9_9STRA)

HSP 1 Score: 362 bits (930), Expect = 2.720e-123
Identity = 163/215 (75.81%), Postives = 191/215 (88.84%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVSSPYL 645
            ARCMDCGTPFCQTH+GCP+NNLIPEWN LV++G W DAID LHKTNNFPEFTGRVCPAPCEG+CVAGL+D PVTIK+IEYSI++RAW++G + PRIP  R+GM VAVVGSGPAGLA AD LNQMGHKVTV+ER DR+GGLLMYGIPNMKL+K+TV+RRVDLL EEGIEFVT ANIG +VD N++RA+ D++ L +GSTKPRDLPVPGR++   + 
Sbjct:  122 ARCMDCGTPFCQTHSGCPVNNLIPEWNNLVYQGQWADAIDRLHKTNNFPEFTGRVCPAPCEGSCVAGLVDGPVTIKNIEYSIVDRAWQDGLIQPRIPRERSGMTVAVVGSGPAGLATADQLNQMGHKVTVFERADRVGGLLMYGIPNMKLEKETVERRVDLLREEGIEFVTNANIGYNVDANELRANFDSVCLCLGSTKPRDLPVPGRELKGVHF 336
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BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A7S3LHR0_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LHR0_9STRA)

HSP 1 Score: 369 bits (947), Expect = 9.670e-123
Identity = 168/215 (78.14%), Postives = 193/215 (89.77%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVSSPYL 645
            ARCMDCGTPFCQTHTGCP+NNLIPEWN LV+ G WRDAID LHKTNNFPEFTGRVCPAPCEG+CVAGL+DSPVTIK+IEY+I++ AW+ G++ PRIP  RTGM VAVVGSGPAGLAAAD LNQMGHKVTVYER DRIGGLLMYGIPNMKL+K+TV+RRV+LL EEGIEFVT A+IG +VDVN++RA+ DA+ L +G+TKPRDLPVPGRD+   + 
Sbjct:  134 ARCMDCGTPFCQTHTGCPVNNLIPEWNNLVYNGQWRDAIDRLHKTNNFPEFTGRVCPAPCEGSCVAGLVDSPVTIKNIEYAIVDEAWKNGYITPRIPKERTGMTVAVVGSGPAGLAAADQLNQMGHKVTVYERADRIGGLLMYGIPNMKLEKETVERRVNLLREEGIEFVTNADIGRNVDVNELRANNDAVALCMGATKPRDLPVPGRDLKGVHF 348
[Close]
BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Match: A0A6U3PC01_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PC01_9STRA)

HSP 1 Score: 362 bits (930), Expect = 2.650e-120
Identity = 163/215 (75.81%), Postives = 191/215 (88.84%), Query Frame = 1 
Query:    1 ARCMDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTGRVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGMNVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKDTVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDLPVPGRDVSSPYL 645
            ARCMDCGTPFCQTH+GCP+NNLIPEWN LV++G W DAID LHKTNNFPEFTGRVCPAPCEG+CVAGL+D PVTIK+IEYSI++RAW++G + PRIP  R+GM VAVVGSGPAGLA AD LNQMGHKVTV+ER DR+GGLLMYGIPNMKL+K+TV+RRVDLL EEGIEFVT ANIG +VD N++RA+ D++ L +GSTKPRDLPVPGR++   + 
Sbjct:  122 ARCMDCGTPFCQTHSGCPVNNLIPEWNNLVYQGQWADAIDRLHKTNNFPEFTGRVCPAPCEGSCVAGLVDGPVTIKNIEYSIVDRAWQDGLIQPRIPRERSGMTVAVVGSGPAGLATADQLNQMGHKVTVFERADRVGGLLMYGIPNMKLEKETVERRVDLLREEGIEFVTNANIGYNVDANELRANFDSVCLCLGSTKPRDLPVPGRELKGVHF 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15726.3323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE7_ECTSI6.540e-14693.49Glutamate synthase (NADH/NADPH-dependent) n=2 Tax=... [more]
A0A836CI68_9STRA3.330e-13890.95Glutamate synthase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S3Y096_HETAK1.970e-13080.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HN51_9STRA2.810e-12681.99Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2Q1R0_9STRA4.240e-12679.53Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1Z5JPW8_FISSO1.620e-12480.95Glutamate synthase (NADPH/NADH) small chain n=2 Ta... [more]
I2CNZ7_NANGC3.220e-12479.62Glutamate synthase (NADPH/NADH) small chain n=2 Ta... [more]
A0A7S4RRN9_9STRA2.720e-12375.81Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3LHR0_9STRA9.670e-12378.14Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A6U3PC01_9STRA2.650e-12075.81Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15726contigH-paniculata_contig15726:297..3345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue2.3e-95
Seed eggNOG ortholog2850.Phatr20342
Preferred nameGLT1
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264,ko:K00266,ko:K00284,ko:K17792
KEGG TC3.A.8.1
KEGG ReactionR00021,R00093,R00114,R00248,R10086
KEGG Pathwayko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0017144,GO:0019676,GO:0019740,GO:0019752,GO:0030447,GO:0032502,GO:0036267,GO:0040007,GO:0042133,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070783,GO:0071704,GO:0097054,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
EggNOG free text desc.Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
EggNOG OGs2XB4G@2836,COG0069@1,KOG0399@2759
EC1.4.1.13,1.4.1.14,1.4.7.1
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Exons3
Model size660
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15726.3323.1prot_H-paniculata_contig15726.3323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15726 297..3336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.956558-CDS-H-paniculata_contig15726:296..5751622929254.956558-CDS-H-paniculata_contig15726:296..575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15726 297..575 -
1691480789.2954278-CDS-H-paniculata_contig15726:296..5751691480789.2954278-CDS-H-paniculata_contig15726:296..575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15726 297..575 -
1622929254.9681664-CDS-H-paniculata_contig15726:2095..23441622929254.9681664-CDS-H-paniculata_contig15726:2095..2344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15726 2096..2344 -
1691480789.3063183-CDS-H-paniculata_contig15726:2095..23441691480789.3063183-CDS-H-paniculata_contig15726:2095..2344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15726 2096..2344 -
1622929254.9790456-CDS-H-paniculata_contig15726:3213..33361622929254.9790456-CDS-H-paniculata_contig15726:3213..3336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15726 3214..3336 -
1691480789.313921-CDS-H-paniculata_contig15726:3213..33361691480789.313921-CDS-H-paniculata_contig15726:3213..3336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15726 3214..3336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.9918463-UTR-H-paniculata_contig15726:3336..33451622929254.9918463-UTR-H-paniculata_contig15726:3336..3345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15726 3337..3345 -
1691480789.3212473-UTR-H-paniculata_contig15726:3336..33451691480789.3212473-UTR-H-paniculata_contig15726:3336..3345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15726 3337..3345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15726.3323.1

>prot_H-paniculata_contig15726.3323.1 ID=prot_H-paniculata_contig15726.3323.1|Name=mRNA_H-paniculata_contig15726.3323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MDCGTPFCQTHTGCPINNLIPEWNELVFKGAWRDAIDSLHKTNNFPEFTG
RVCPAPCEGACVAGLIDSPVTIKSIEYSIIERAWEEGWVVPRIPTHRTGM
NVAVVGSGPAGLAAADTLNQMGHKVTVYEREDRIGGLLMYGIPNMKLDKD
TVKRRVDLLAEEGIEFVTGANIGVDVDVNDVRASCDALVLTVGSTKPRDL
PVPGRDVSSPYLEPGL*
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mRNA from alignment at H-paniculata_contig15726:297..3345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15726.3323.1 ID=mRNA_H-paniculata_contig15726.3323.1|Name=mRNA_H-paniculata_contig15726.3323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3049bp|location=Sequence derived from alignment at H-paniculata_contig15726:297..3345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCGATGCATGGACTGCGGCACTCCGTTTTGCCAGACACACACGGGATG
TCCGATCAACAATTTGATCCCGGAATGGAACGAGCTGGTGTTCAAAGGCG
CCTGGCGGGATGCGATCGACAGCCTCCACAAGGTGCGTTGAAAAGTGCTC
TCATAGGTCAATGTTGTCAAGAGGTATAGCTGCAAGGCGGTACACTGGTG
TGTGACTCAAAGTCGTAGTTGGAGACGTGTTGCCTTGCTTTGGGGTGTGT
GGTGATGTAATTTCATGCTACTGCAACACTTCACCCTGTACTTCTGACTT
GAGCCTCTGTTTAATCTAGTAGAATCAGTTCAGACTGTACTTGCCGTACA
GTACGGAAACATGGAGTACGTATGATACCTGGCACTTGTCTGTAAAGGTG
ACGATGGTTTATCACCAATACGCGAACACCACTCGTACTTTATGCCCTTT
ATTCTGTGTTCGTGGGCTAAAGCAATGAAGTCAACTGGCTGTGCGTTAAG
AGGCGAGATAGTGTCAGGGTGTTCCGGGGGAGGTTGGGCACCCCTAATGA
CATACATGGCGACACATGACATGTTTCAGTTCGACTGACGATGAATACGC
ACATTTCTGCTCTTGTGAGACAGCAACAAATTCAGGGGCTGCGTCTGTGT
CTGCGTCTGTGTCCGTGTCTTTTCCCATCCCTGCCCCTGTGTTAATTTAT
GACAAGGTCTGTTACTCTCGGCAGTCGTGTTTTATGATACCCGTCTTCAC
ACCCACCTCTCACGCTTCCATCGTCCCCTTTTTGTTTCCGAAACCTCCGC
ATTCTTGTTCGTTCCGAAAAACGTCAACCGTCCATACATAGATACAGTAG
AACAGTACATTCAACACATGAAAGAAACGCCCCGCCTTCATCGCCCTGTC
TCCCACTGGATTCACCCTGCCGCCCCTTCCCCGTGTTGCATTGTGTGTTT
GATGTCGCCACCCAAATCCGAAAATTCCTCCACAACTTCCACAATTAACA
GACCAACAATTTCCCCGAGTTTACGGGAAGGGTGTGCCCTGCCCCCTGCG
AGGGCGCGTGTGTGGCGGGTCTTATCGACTCTCCCGTCACAATCAAAAGC
ATTGAGTATTCCATCATCGAGAGGGCGTGGGAGGAGGGATGGGTCGTGCC
GCGTATTCCCACACACCGTACGGGGATGAATGTCGCGGTGGTTGGCTCTG
GTCCTGCCGGGCTGGCAGCCGCCGACACGCTCAACCAGATGGGACACAAG
GTAACCGAAGGAATAGACTGGGCGCGATTAGGGAGATAGATGTGGGTTGG
GTGGTGTCGCATTGGACAAGTAATATGTTGGTAGGGATAGATATGGATAC
CAGAGTATCAATTGAGCCGGGTGTCCAGTAATGAGTTCATCGAGTTGTTG
TAAATCTCGTCTGCCACGAGTGCTTACTGTGTGGGGAGGAAGGGTGTATT
TTTCACTGTTGACTGATTCCGGAAGCTGTCAAATCGGGTACATCGAGACT
GCGCTGCTATTTCAAATCGCAAAAGGCAACAGCATCGACGAGGAGAAAGC
TGCAAACTGTCAAATATCATGAAACGCTGCCCGCCTACATCGTGGTGGAG
ATTAACTGGCCTGTAAAATATCACGTGATCTTTAGGAAAGAGAAAAACTT
CCTTTGTGTTCGTCTCCGGTGACGGCACTCCTGGGCATCTCTAGATACTA
CCAGGTTCTGGAAACCGAATGGCACAATCGTGTGGTACGCTTATGCAATC
TTCCAGTTGTTTGCACCTAGTTTTGACTTATCTCATGTCTGAGTCAACTG
CTAGTATCCGTGGTTTAATACTGCCTACTTGGTTCGGCCGAACCGGGGTG
GCGCCTACCCCGCAGAGGAATAAATATGTGTTCTGTTGAAGGAAATGCAG
ACATACTTTGGTGAAATACTTGAAGTATGGAAGCATCGGTGAAGGTTTTT
ACCTCAGCCTTCCGGGGATTAAAAAAAAAAACCCTGCATTTTAAATGGGA
CTGGTGACGGGTACTTCCGGTCGTTCCCAATCCATCATTGCAAACATGAC
CACACTACAGGCGAGATGGTTCGGTCGAACGACTTCAAATTTTCGTTATT
CGACAGCAACAACTAGATCCTGTTAACGATGTGCCTCCGTAGTAGCCATT
TGTGACAGACATCCCGAAACAACACAGCGAACACCATAGGGCACTTGCAG
CAAGGGTGAAAATCGCGTTTCTGTGTTTCTGAGTGTCATATTGCATACCT
GGCACGATGCGGTTGTTCCACGCCGTCAATCGGCCTTAACTAGCAACCCT
CTCGCCGTCTAATCAGAACCATAGGTTGTAGACATTGAGAAAAGAGCGAA
AGCCTTGGTCATCCAAGATACCATCGTAGTACGCGTGGAATCGATATATG
TGGAACCGTCTCGATCATGCAGTGTGCACCCCCACTTCGATTTTCGATTT
AACCCTGTAATTGTGGAGATCGATACACCAAGTTGAGTGGGGGCACACCG
GGTGAAGGAATAACAATTTGGTCCTATGAGACTACGACAGCACATTTTTC
TCTGTCTCGCGGCATTTTTCGCTACGTGGAGTATTCGCGATTTTGGAGGG
ATTTGAAGGGGTTTCGGGGGTAATAACAAAATCTGCACCTTCGCCTCATC
AATACACTGGAGCACTCACGCACGCAACTGTATTTCCCGTCACGATGATG
GCGCTTTTGCTGTTTCCTCTGGTTCTCTGTCTTGCTACCCTTTTCTCCCG
TCGACCAAAAATGCCCCAAGGTCACTGTGTACGAACGCGAGGATCGTATC
GGTGGACTGCTCATGTACGGCATTCCCAACATGAAGCTCGACAAGGATAC
GGTGAAGCGCAGGGTAGACCTGTTGGCCGAAGAGGGGATCGAGTTCGTTA
CCGGCGCCAACATCGGAGTGGACGTTGACGTGAACGACGTACGTGCTTCG
TGCGATGCGCTCGTGCTTACGGTCGGGTCAACAAAGCCTAGAGATCTACC
CGTGCCTGGACGTGACGTGAGTTCTCCTTATTTGGAGCCGGGCCTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15726:297..3345-

>mRNA_H-paniculata_contig15726.3323.1 ID=mRNA_H-paniculata_contig15726.3323.1|Name=mRNA_H-paniculata_contig15726.3323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig15726:297..3345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTGCGGCACTCCGTTTTGCCAGACACACACGGGATGTCCGATCAA
CAATTTGATCCCGGAATGGAACGAGCTGGTGTTCAAAGGCGCCTGGCGGG
ATGCGATCGACAGCCTCCACAAGATGGACTGCGGCACTCCGTTTTGCCAG
ACACACACGGGATGTCCGATCAACAATTTGATCCCGGAATGGAACGAGCT
GGTGTTCAAAGGCGCCTGGCGGGATGCGATCGACAGCCTCCACAAGACCA
ACAATTTCCCCGAGTTTACGGGAAGGGTGTGCCCTGCCCCCTGCGAGGGC
GCGTGTGTGGCGGGTCTTATCGACTCTCCCGTCACAATCAAAAGCATTGA
GTATTCCATCATCGAGAGGGCGTGGGAGGAGGGATGGGTCGTGCCGCGTA
TTCCCACACACCGTACGGGGATGAATGTCGCGGTGGTTGGCTCTGGTCCT
GCCGGGCTGGCAGCCGCCGACACGCTCAACCAGATGGGACACAAGACCAA
CAATTTCCCCGAGTTTACGGGAAGGGTGTGCCCTGCCCCCTGCGAGGGCG
CGTGTGTGGCGGGTCTTATCGACTCTCCCGTCACAATCAAAAGCATTGAG
TATTCCATCATCGAGAGGGCGTGGGAGGAGGGATGGGTCGTGCCGCGTAT
TCCCACACACCGTACGGGGATGAATGTCGCGGTGGTTGGCTCTGGTCCTG
CCGGGCTGGCAGCCGCCGACACGCTCAACCAGATGGGACACAAGGTCACT
GTGTACGAACGCGAGGATCGTATCGGTGGACTGCTCATGTACGGCATTCC
CAACATGAAGCTCGACAAGGATACGGTGAAGCGCAGGGTAGACCTGTTGG
CCGAAGAGGGGATCGAGTTCGTTACCGGCGCCAACATCGGAGTGGACGTT
GACGTGAACGACGTACGTGCTTCGTGCGATGCGCTCGTGCTTACGGTCGG
GTCAACAAAGCCTAGAGATCTACCCGTGCCTGGACGTGACGTGAGTTCTC
CTTATTTGGAGCCGGGCCTATGAGTCACTGTGTACGAACGCGAGGATCGT
ATCGGTGGACTGCTCATGTACGGCATTCCCAACATGAAGCTCGACAAGGA
TACGGTGAAGCGCAGGGTAGACCTGTTGGCCGAAGAGGGGATCGAGTTCG
TTACCGGCGCCAACATCGGAGTGGACGTTGACGTGAACGACGTACGTGCT
TCGTGCGATGCGCTCGTGCTTACGGTCGGGTCAACAAAGCCTAGAGATCT
ACCCGTGCCTGGACGTGACGTGAGTTCTCCTTATTTGGAGCCGGGCCTAT
GA
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