mRNA_H-paniculata_contig15722.3321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15722.3321.1
Unique NamemRNA_H-paniculata_contig15722.3321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15722.3321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15722contigH-paniculata_contig15722:2789..3898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.827531-CDS-H-paniculata_contig15722:2788..29451622929254.827531-CDS-H-paniculata_contig15722:2788..2945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15722 2789..2945 +
1691480789.2357104-CDS-H-paniculata_contig15722:2788..29451691480789.2357104-CDS-H-paniculata_contig15722:2788..2945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15722 2789..2945 +
1622929254.8394597-CDS-H-paniculata_contig15722:3848..38981622929254.8394597-CDS-H-paniculata_contig15722:3848..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15722 3849..3898 +
1691480789.2435806-CDS-H-paniculata_contig15722:3848..38981691480789.2435806-CDS-H-paniculata_contig15722:3848..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15722 3849..3898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15722.3321.1prot_H-paniculata_contig15722.3321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15722 2789..3898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15722.3321.1

>prot_H-paniculata_contig15722.3321.1 ID=prot_H-paniculata_contig15722.3321.1|Name=mRNA_H-paniculata_contig15722.3321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
GEKVDIGETWFSCDPFGKLRLTRELSYRCPAAPTDQLLALPLGMLPIPYR
VAADKYICTQKFGYQGVDK
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mRNA from alignment at H-paniculata_contig15722:2789..3898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15722.3321.1 ID=mRNA_H-paniculata_contig15722.3321.1|Name=mRNA_H-paniculata_contig15722.3321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig15722:2789..3898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAGAAAGTGGACATAGGTGAGACTTGGTTCTCGTGTGATCCATTCGG
AAAGCTGCGCCTGACGAGGGAGTTGAGCTACCGCTGCCCAGCGGCGCCTA
CGGACCAGCTGTTGGCCCTGCCTCTTGGGATGTTGCCCATTCCATACCGT
GTGGCAGGTGTGAAACGAGAAGTAGAGAGAACGGTAGCGGGGCGGGGGTG
GAGGAGGGAGGGAGGGAGGGGGGGACGGACGGACGGAGGGAAGGGTGATG
TTGTTGCATTTTTGAGAGGAGGTAGGGTGTAGCATGAAATAGGTTTGGAC
TTTTACTTGTTTTTCGCTTCGCACGTTTTGTTGTGTGAAATGTTGTTTGT
TGAGATATAAAAAGTTCTATGCAAACTGTCCGGTATTTGTCGCTGCTCTA
CTGTAGTTTGGAACACATTGAGTCATTCGGGTGCACGGTGCGCGGTGAAG
AACCCCTCTCTTCACTTGAAGAATAAGAACTAAAAGACAAGCTGCAACTA
GGGGAGGCCTAGAAGTATACCAAAAATTGGACAAAGGGATGAGGTTGAAG
TAATACCTTCACAGACAAGTAGAAGCAGGCACCAAGTTGAAAGTCAAATT
TAGGACGGGGGATATGGACCTCAAGGACCGTAGGAAATGATTCCGGAAAG
CACACGAGGGCGACGATTCAATTACCAAGTGTGGCTGCGCTAGAGCGCAT
GAGGACCGAAGTCACGTGGTGGGAGAATGCCCCCTGTATGAGAGAGAGGA
AAGTATTTTATATATCAATTGGGAAATATTCAAAGGTGCGATGGAGAAAC
CTTCGAATGCTGGGATGGCGAAAAGGAGGCGAAAGCGGTTCCAACACATG
AAAATTGGCCTGAAAAAGCAAGGGATACTATTTCTAAGCCACCTTCGGCA
ATGTGGGAAAGAGCAAATAGCCATCGGAAACTGCTCTGATAGAACGAAAG
CTCCGTCCTCTCAATGATACTGGTCAATGGTCCAACAACTACGGCAGACA
AAACATGAATACCCCCCTCTCCCGTCCCCCTACTTGTCTCCCCTTCGTCC
TCCCACACAGCGGATAAGTATATATGCACGCAGAAGTTTGGATACCAAGG
CGTGGACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15722:2789..3898+

>mRNA_H-paniculata_contig15722.3321.1 ID=mRNA_H-paniculata_contig15722.3321.1|Name=mRNA_H-paniculata_contig15722.3321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig15722:2789..3898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAGAAAGTGGACATAGGTGAGACTTGGTTCTCGTGTGATCCATTCGG
AAAGCTGCGCCTGACGAGGGAGTTGAGCTACCGCTGCCCAGCGGCGCCTA
CGGACCAGCTGTTGGCCCTGCCTCTTGGGATGTTGCCCATTCCATACCGT
GTGGCAGGGTGAGAAAGTGGACATAGGTGAGACTTGGTTCTCGTGTGATC
CATTCGGAAAGCTGCGCCTGACGAGGGAGTTGAGCTACCGCTGCCCAGCG
GCGCCTACGGACCAGCTGTTGGCCCTGCCTCTTGGGATGTTGCCCATTCC
ATACCGTGTGGCAGCGGATAAGTATATATGCACGCAGAAGTTTGGATACC
AAGGCGTGGACAAGCGGATAAGTATATATGCACGCAGAAGTTTGGATACC
AAGGCGTGGACAAG
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