mRNA_H-paniculata_contig1571.3312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1571.3312.1
Unique NamemRNA_H-paniculata_contig1571.3312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1571.3312.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.720e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 1 
Query: 1087 ISENLKPNDRFGERTARMCQSLIQKGIALKQIVPIVQGVFWHSLNFDIATEINIKLVSSTVKILGLGITTLDSDELIKTMQRAPLLTIAEDEFMRNGNQKYP 1392
            I   LKP  +FGE  AR+ QS +Q G++L     ++Q   +H+    +  ++NI    +TVK+L LGIT LD +EL+K + +AP L IA DE +RNG++K+P
Sbjct:  183 IKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFP 284
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BLAST of mRNA_H-paniculata_contig1571.3312.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 8.860e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 1 
Query: 1087 ISENLKPNDRFGERTARMCQSLIQKGIALKQIVPIVQGVFWHSLNFDIATEINIKLVSSTVKILGLGITTLDSDELIKTMQRAPLLTIAEDEFMRNGNQKYP 1392
            I   LKP  +FGE  AR+ QS +Q G++L     ++Q   +H+    +  ++NI    +TVK+L LGIT LD +EL+K + +AP L IA DE +RNG++K+P
Sbjct:  286 IKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFP 387
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BLAST of mRNA_H-paniculata_contig1571.3312.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.000e-14
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 1 
Query: 1087 ISENLKPNDRFGERTARMCQSLIQKGIALKQIVPIVQ--GVFWHSLNFDIATEINIKLVSSTVKILGLGITTLDSDELIKTMQRAPLLTIAEDEFMRNGNQKYP 1392
            I + LKP  +FGE  AR+ +S ++ G++L     ++Q     +H+    +  ++NI    +TVK+L LGIT LD +EL+K + RAP L IA+DE +RN ++K+P
Sbjct:  191 IKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQPTSTVFHATGVQLKQDLNITCARNTVKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFP 294
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BLAST of mRNA_H-paniculata_contig1571.3312.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.780e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1 
Query: 1087 ISENLKPNDRFGERTARMCQSLIQKGIALKQIVPIVQGVFWHSLNFDIATEINIKLVSSTVKILGLGITTLDSDELIKTMQRAPLLTIAEDEFMRNGNQKYP 1392
            I + LKP  + GE  AR+ +S ++ G++L     ++Q   +H+    +   +NI    +TVK+L LGIT LD +EL+K + RAP L I  DE +RN ++K+P
Sbjct:   72 IKKRLKPGGKNGETAARLSKSFVEGGVSLNTTPQLLQSTVFHATGVKLKQYLNITCPRNTVKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFP 173
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BLAST of mRNA_H-paniculata_contig1571.3312.1 vs. uniprot
Match: A0A6H5JYL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.750e-10
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1 
Query: 1162 GIALKQIVPIVQGVFWHSLNFDIATEINIKLVSSTVKILGLGITTLDSDELIKTMQRAPLLTIAEDEFMRNGNQKYP 1392
            G++L     ++Q + +H+    +  ++NI    +TVK+LGLGIT LD +EL+K + +AP L IA+DE +RNG++K+P
Sbjct:  269 GVSLSMTPQLLQFIMFHTTGVRLKQDLNITCARNTVKVLGLGITQLDGEELVKAILQAPFLLIADDESLRNGDKKFP 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1571.3312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJJ7_ECTSI4.720e-1742.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK1_ECTSI8.860e-1742.16Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JNK4_9PHAE2.000e-1439.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K280_9PHAE3.780e-1338.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL8_9PHAE2.750e-1041.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1571contigH-paniculata_contig1571:1933..4122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1408
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1571.3312.1prot_H-paniculata_contig1571.3312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1571 2827..4122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.9157507-UTR-H-paniculata_contig1571:1932..28261622929253.9157507-UTR-H-paniculata_contig1571:1932..2826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1571 1933..2826 +
1691480788.8370502-UTR-H-paniculata_contig1571:1932..28261691480788.8370502-UTR-H-paniculata_contig1571:1932..2826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1571 1933..2826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.9316134-CDS-H-paniculata_contig1571:2826..29131622929253.9316134-CDS-H-paniculata_contig1571:2826..2913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1571 2827..2913 +
1691480788.8536294-CDS-H-paniculata_contig1571:2826..29131691480788.8536294-CDS-H-paniculata_contig1571:2826..2913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1571 2827..2913 +
1622929253.944919-CDS-H-paniculata_contig1571:3696..41221622929253.944919-CDS-H-paniculata_contig1571:3696..4122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1571 3697..4122 +
1691480788.8629165-CDS-H-paniculata_contig1571:3696..41221691480788.8629165-CDS-H-paniculata_contig1571:3696..4122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1571 3697..4122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1571.3312.1

>prot_H-paniculata_contig1571.3312.1 ID=prot_H-paniculata_contig1571.3312.1|Name=mRNA_H-paniculata_contig1571.3312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MVGWLQQDLEAAKFFASKQRKGYDKQKKRVKRAEREMMALIAAAAAKRFI
LSPAPPFEGQLNVRISENLKPNDRFGERTARMCQSLIQKGIALKQIVPIV
QGVFWHSLNFDIATEINIKLVSSTVKILGLGITTLDSDELIKTMQRAPLL
TIAEDEFMRNGNQKYPHLRVI
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mRNA from alignment at H-paniculata_contig1571:1933..4122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1571.3312.1 ID=mRNA_H-paniculata_contig1571.3312.1|Name=mRNA_H-paniculata_contig1571.3312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2190bp|location=Sequence derived from alignment at H-paniculata_contig1571:1933..4122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAACACAGCACAACAAAAGCTCACGATTCCTCACAGTTGTCGACGAG
AACTGCCTCATCAAATATCTCATGGCTTACCATGGGGCCAAGGTTTCGAT
ACTAGGTTCAAGTATTTAACAATGTAGAACATAACTCAGCATGACTTGGC
TACGCGCTCCTGTACTAATTTTATGGATAAAGTTATATACCTGAACTGAG
CAACATCTCAGCAAGGTTCAAAACAATTACTGAGGTTTCAAAAAAAGGGA
GTGATACTGCACAATTTTTTCAGGCGGATATAGTCACCAGTGTACAGGAG
TACAATAGCCAGGGCAATAGACCAGATCGTTAGACAAGACCTGCCCCACC
TCCTTCTGCGCGTTTTACTAGCTGCAAAGCTCAGCAATAAGCGACTAGGG
GCATCCATCGAAAAATCAAGTAACCAGGCTAAGTGAAAAAAAAATAAACC
GCTCGCTACCGCGCAAATTGGTCAAAACGAGAACTGGTGGAAGCCCTTGA
ATGCATGAAGCTGCGCGGAAATTGAAACGCGCCGTGGAGAGAGATGGCTT
GGCGTTGTCCGAGGTGCTGCGGGCAACCGTGAATGCTGAACGCAACAAGG
CCGTTGCCGCGAAGCAGGCCGCGGAAAACAAAGCGGCCAAGGCCGTCGCG
CAGTCGTCGGCTGCGGACAAAAAGCGATGGAGGATGCCATGACTGGTGCT
GCTCATGCTCAGCAGTCGCTCCGCGCGGAACAGGAGAAAGGCGTGCGGCC
AAGGCAAACCCAGCGAGTTTAGCGGAGGAACTGCAGGGGTTTGCCGTATG
CAGGAGCTGAGAGTGGACACGGAGGCTATGGGCATGGCAGAAACCATGCC
GGTGTCAAACTTGCTGCAGTGAGGTGACCAGGTTGACGAAGCACATGGTG
GGGTGGTTGCAGCAAGATCTCGAGGCGGCAAAATTTTTCGCTTCAAAACA
GCGGAAGGGCTATGATAAGCAGAAGAAGCGGGTGAGATAAGAGGTTTTTC
ACTATAGGCAATCAGCTGCATCCCCAATTGCTGCTCTCAGTCTCGTTTGA
TGCTCGGAATGGGTTTGGTTATGTCTGTGCTGTGTGTGTCGTCCTTCAAT
TGATTGTGCCCTGTTAGCTGCGAATTTTTATGTTTGTAATGCTTTGATCA
TAAAATAAGCTACATGATCACATTCGGCAACACTGAAAATGTAGTTTATG
CTTCGAATCAGAATGTGTGTGACAGCAGTGTGTGTATGTGTGTGCATGCT
GAACAGCCTTTTTTGTAGACCATACCCGCCAAGCTTGTTCGTATATTGTG
TGTGCAGTATAGATGTCAGGTAGAACAGGCGTTTGCTGGCTGGTGGCCTA
TCTCTTGTTTGTACACCCTCTCAGTGCCTGCGTTCTCTGTGTTGCGGGTT
GTAATGATGTTGTGCTGGCTGTCTCAGTTGCGCTATGTCAGCTGCCGTAT
CTTTTGTGTGGTTCAAGTTGTGTATTTTTTTGTCTTGGTCTAAACATAAA
TATAAGGTACATTTACATTATTGTCGCAAAAAGGTACGTTATAGCAGTTG
TGCCTCCTGTGCTGCTACTACTCCACAACATGAGACCAAAATCAAACAAA
ATATCCGTGACATGCATGGCAATATTGCAATGCTGGCAGTGCAATTATTG
TGAACTCTATTCGCCACTTTTGACCGATTACGAAATCATCACCGCGTCTT
TTCACTGACTTTCGACAGCCTGACTTGTCTGTTTTATTCCCGTGAATTTA
CCTATCATATGTAGGTTAAGCGGGCCGAGAGAGAGATGATGGCGCTCATA
GCTGCTGCTGCCGCAAAGCGCTTTATACTGAGTCCTGCTCCGCCGTTCGA
GGGCCAGCTCAACGTCAGAATATCAGAGAATCTAAAACCTAATGACCGGT
TCGGTGAGCGGACGGCAAGGATGTGTCAGTCACTCATTCAAAAGGGTATA
GCGCTCAAACAGATTGTACCTATCGTCCAGGGCGTGTTCTGGCACTCGCT
CAACTTCGACATAGCTACAGAAATCAACATAAAACTGGTCTCGAGCACCG
TTAAAATCCTCGGCCTCGGCATCACTACGCTCGACAGCGACGAGCTCATC
AAGACGATGCAGAGAGCGCCGTTGCTGACCATTGCGGAAGACGAGTTTAT
GCGAAATGGAAACCAAAAATACCCCCATCTTCGTGTCATT
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Coding sequence (CDS) from alignment at H-paniculata_contig1571:1933..4122+

>mRNA_H-paniculata_contig1571.3312.1 ID=mRNA_H-paniculata_contig1571.3312.1|Name=mRNA_H-paniculata_contig1571.3312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig1571:1933..4122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGGTGGTTGCAGCAAGATCTCGAGGCGGCAAAATTTTTCGCTTC
AAAACAGCGGAAGGGCTATGATAAGCAGAAGAAGCGGATGGTGGGGTGGT
TGCAGCAAGATCTCGAGGCGGCAAAATTTTTCGCTTCAAAACAGCGGAAG
GGCTATGATAAGCAGAAGAAGCGGGTTAAGCGGGCCGAGAGAGAGATGAT
GGCGCTCATAGCTGCTGCTGCCGCAAAGCGCTTTATACTGAGTCCTGCTC
CGCCGTTCGAGGGCCAGCTCAACGTCAGAATATCAGAGAATCTAAAACCT
AATGACCGGTTCGGTGAGCGGACGGCAAGGATGTGTCAGTCACTCATTCA
AAAGGGTATAGCGCTCAAACAGATTGTACCTATCGTCCAGGGCGTGTTCT
GGCACTCGCTCAACTTCGACATAGCTACAGAAATCAACATAAAACTGGTC
TCGAGCACCGTTAAAATCCTCGGCCTCGGCATCACTACGCTCGACAGCGA
CGAGCTCATCAAGACGATGCAGAGAGCGCCGTTGCTGACCATTGCGGAAG
ACGAGTTTATGCGAAATGGAAACCAAAAATACCCCCATCTTCGTGTCATT
GTTAAGCGGGCCGAGAGAGAGATGATGGCGCTCATAGCTGCTGCTGCCGC
AAAGCGCTTTATACTGAGTCCTGCTCCGCCGTTCGAGGGCCAGCTCAACG
TCAGAATATCAGAGAATCTAAAACCTAATGACCGGTTCGGTGAGCGGACG
GCAAGGATGTGTCAGTCACTCATTCAAAAGGGTATAGCGCTCAAACAGAT
TGTACCTATCGTCCAGGGCGTGTTCTGGCACTCGCTCAACTTCGACATAG
CTACAGAAATCAACATAAAACTGGTCTCGAGCACCGTTAAAATCCTCGGC
CTCGGCATCACTACGCTCGACAGCGACGAGCTCATCAAGACGATGCAGAG
AGCGCCGTTGCTGACCATTGCGGAAGACGAGTTTATGCGAAATGGAAACC
AAAAATACCCCCATCTTCGTGTCATT
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