mRNA_H-paniculata_contig15707.3309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15707.3309.1
Unique NamemRNA_H-paniculata_contig15707.3309.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: D7G6A3_ECTSI (Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A3_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 3.030e-125
Identity = 176/192 (91.67%), Postives = 186/192 (96.88%), Query Frame = 1 
Query:    1 QRHIFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDTTAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWLRR 576
            +RHI+MIMDLATGGELF+LVTKNPGDCATE EIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQ PGDTTA+KLIDFGLSKHF  +Q+MQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIV GEYDMPDVLFQH+S+DAKDFI K+LVVDPK+RLSAEQALAHPWLRR
Sbjct:  222 KRHIYMIMDLATGGELFHLVTKNPGDCATEPEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQTPGDTTAVKLIDFGLSKHFTLDQNMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVCGEYDMPDVLFQHISSDAKDFITKLLVVDPKERLSAEQALAHPWLRR 413
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: A0A6H5JF21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF21_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 3.830e-123
Identity = 172/187 (91.98%), Postives = 181/187 (96.79%), Query Frame = 1 
Query:   16 MIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDTTAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWLRR 576
            MIMDLATGGELF+LVTKNPGDCATE EIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQ PGDTTA+KLIDFGLSKHF  +Q+MQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIV GEYDMP+VLFQH+S+DAKDFI K+LVVDPK+RLSAEQALAHPWLRR
Sbjct:    1 MIMDLATGGELFHLVTKNPGDCATESEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQTPGDTTAVKLIDFGLSKHFTLDQNMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVCGEYDMPEVLFQHISSDAKDFITKLLVVDPKERLSAEQALAHPWLRR 187
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: A0A835YPA7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA7_9STRA)

HSP 1 Score: 239 bits (611), Expect = 3.060e-71
Identity = 114/197 (57.87%), Postives = 151/197 (76.65%), Query Frame = 1 
Query:    4 RHIFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDTTAIKLIDFGLSKHFVEE-QHMQQAVGSTYY------VAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWLR 573
            R+++++MD+  GGELFNLVT   G CA E E+  ML++MLSAV Y+HRH IVHRD+KLENW++  PGD++++KLIDFGLS+HF  + + M QAVGST        V+P+VL G+Y   CD+WSMGVIAYMM+SGAPPFWG+ D QVRAKI++G Y+MP  LF   S  A+DF+ ++L +D   R++AEQALAHP+LR
Sbjct:  249 RYVYLVMDMCGGGELFNLVTATRGPCAPEPEMASMLSDMLSAVAYLHRHRIVHRDIKLENWMLSVPGDSSSLKLIDFGLSRHFGGDGETMYQAVGSTITQSLLQPVSPQVLLGNYTEACDLWSMGVIAYMMLSGAPPFWGSNDVQVRAKIIQGHYEMPAALFGATSPVAQDFVRRLLTLDATARMTAEQALAHPFLR 445
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: F0YMM1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMM1_AURAN)

HSP 1 Score: 221 bits (562), Expect = 9.670e-66
Identity = 105/192 (54.69%), Postives = 137/192 (71.35%), Query Frame = 1 
Query:    4 RHIFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDTTAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWLRRA 579
            R I+++MD+ TGGELF+LV  +  +  TE    R +T M SAV Y+H HG+VHRDLKLENWL +    +  +KLIDFGL+KHF+  + +  AVGS YYVAPEVL+GSY  +CD+WS+GVIAYM+VSGAPPFWG  D  +R  I+ G ++ P   F  +S  AKDFIA++L  DP+ R+SA  AL HPWL+ A
Sbjct:  142 RKIYLVMDICTGGELFDLVNMS-SEYRTEHCATRFMTEMFSAVQYLHEHGVVHRDLKLENWLFEHHTGSH-LKLIDFGLAKHFLVHERIHGAVGSMYYVAPEVLRGSYDSRCDLWSLGVIAYMLVSGAPPFWGRDDRDIRRSIIAGRWEFPQRFFSQVSPMAKDFIARLLTSDPELRMSAAAALTHPWLKAA 331
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: F0YI89_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI89_AURAN)

HSP 1 Score: 207 bits (528), Expect = 8.440e-61
Identity = 103/194 (53.09%), Postives = 133/194 (68.56%), Query Frame = 1 
Query:    1 QRHIFMIMDLATGGELFNLVTKN----PGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDTTAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWL 570
            +R I++IMDL TGGELF LV  +       CAT       +  MLSAV Y+H +G+VHRDLKLENWL +    +  +KLIDFGL++HF+  + +  AVGS YYVAPEVL+GSY  +CD+WS+GVIAYM+VSGAPPFWG  D  +R  I+ G ++ P   F  +S  +KDFIA++L  DP  R+SA  AL HPWL
Sbjct:  132 RRKIYLIMDLCTGGELFELVNTSIEHRSEKCAT-----CFMAEMLSAVQYLHDNGVVHRDLKLENWLFEHRAGSH-LKLIDFGLARHFLGHERIHGAVGSMYYVAPEVLRGSYDARCDLWSLGVIAYMLVSGAPPFWGKDDRDIRRNILAGRWEFPPQFFAGVSPVSKDFIARLLTHDPDMRMSASDALVHPWL 319
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: B8CD83_THAPS (Protein kinase domain-containing protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8CD83_THAPS)

HSP 1 Score: 197 bits (502), Expect = 1.170e-60
Identity = 94/189 (49.74%), Postives = 131/189 (69.31%), Query Frame = 1 
Query:   10 IFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDT-TAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWLR 573
            +F+I +L  GG+LF+L+T +P    TE    + ++ MLSAV ++H   I HRDLKLENW++++  D  + +KLIDFGLS HF     + + VGS+YYVAPEVL+ SY   CD+WS+GVI YM++SGAPPF+G  D  ++A IV GEY  P+ LF+ +S DA  F++ +L    + R +AEQAL HPWLR
Sbjct:   41 LFIITELGRGGDLFHLLTTHPKHGVTEGYAAKTVSEMLSAVSFLHSRHICHRDLKLENWVLESGKDVWSPLKLIDFGLSTHFTPGHRLSRVVGSSYYVAPEVLKKSYTEACDLWSLGVIVYMLLSGAPPFYGKNDEAIKASIVHGEYQFPEELFKDVSDDAMAFVSCLLSYSIEYRYTAEQALTHPWLR 229
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: A0A7S2U7Z8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7Z8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 3.980e-59
Identity = 93/188 (49.47%), Postives = 132/188 (70.21%), Query Frame = 1 
Query:   10 IFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDT-TAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWL 570
            +F+I +L  GG+LF+L+T +P    TE    + ++ MLSAV ++H   IVHRDLKLENW++++  D  + +KLIDFGLS HF     + + VGS+YYVAPEVL+ SY   CD+WS+GVI YM++SGAPPF+G  D  ++A IV+GEY  P  LF+ +S +A  F++ +L  + + R +AEQAL HPWL
Sbjct:  103 LFIITELGRGGDLFHLLTTHPKHGVTEAYAAKTVSQMLSAVAFLHSRHIVHRDLKLENWVLESGKDVWSPLKLIDFGLSTHFTAGHRLSRVVGSSYYVAPEVLKKSYTEACDLWSLGVIVYMLLSGAPPFYGKNDEAIKASIVQGEYTFPHELFRDVSDEAMAFVSTLLSYNIEYRYTAEQALTHPWL 290
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: W7T4K4_9STRA (Calcium-dependent protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4K4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 6.350e-58
Identity = 92/188 (48.94%), Postives = 131/188 (69.68%), Query Frame = 1 
Query:    7 HIFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDTTAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWL 570
            HIF+IM+L TGGEL + + +  G   +E    +++  M+ A+ Y H H I HRDLKLEN+L +  G    +KLIDFGLS+H+ ++Q M + VG+ YYV P VL+GSY  +CDMWS+GVIAYM++SG PPF+G+ D +   ++  G++  P   F  +SA AKDFI+++LVVD  +R++A QA AHPWL
Sbjct:  124 HIFLIMELCTGGELLDKLHRQEGHHYSEQIASQLVKKMVGAIRYCHDHHIAHRDLKLENFLFENEGADAELKLIDFGLSRHYRDDQRMHRPVGTPYYVDPSVLEGSYTQECDMWSIGVIAYMLLSGRPPFYGDTDNETLIRVRAGKFSFPPSAFHQVSAQAKDFISRLLVVDHTRRMTARQAQAHPWL 311
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: A0A1Z5JZ12_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ12_FISSO)

HSP 1 Score: 196 bits (499), Expect = 3.550e-57
Identity = 92/188 (48.94%), Postives = 132/188 (70.21%), Query Frame = 1 
Query:   10 IFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDT-TAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWL 570
            +F+I +L  GG+LF+L+T +P    TE    + ++ MLSAV ++H   I HRDLKLENW++++  D  + +KLIDFGLS HF   Q + + VGS+YYVAPEVL+ SY   CD+WS+GVI YM++SGAPPF+G  D  ++A IV+GEY  P  LF+ +S +A  F++ +L  + + R +A+QAL HPWL
Sbjct:  278 LFIITELGRGGDLFHLLTTHPKHGVTESYAAKTVSEMLSAVAFLHSRNICHRDLKLENWVLESGKDVWSPLKLIDFGLSTHFTAGQRLSRVVGSSYYVAPEVLKKSYTEACDLWSLGVIVYMLLSGAPPFYGKNDEAIKASIVQGEYTFPHELFRDVSDEAMAFVSTLLSYNIEYRYTADQALTHPWL 465
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BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Match: A0A7S2KB29_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KB29_9STRA)

HSP 1 Score: 193 bits (490), Expect = 4.210e-57
Identity = 91/188 (48.40%), Postives = 129/188 (68.62%), Query Frame = 1 
Query:   10 IFMIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHRDLKLENWLMQAPGDT-TAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVLQGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVLFQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWL 570
            +F+I +L  GG+LF+L+T +P    TE    + +  MLSAV ++H   I HRDLKLENW++++  D  + +KLIDFGLS HF   + + + VGS+YYVAPEVL+ SY   CD+WS+GVI YM++SGAPPF+G  D  ++A IV GEY  P  LF+ +S +A  F++ +L  + + R +AEQAL H WL
Sbjct:  154 LFIITELGRGGDLFHLLTTHPKHGVTEAYAAKTVAQMLSAVAFLHSRSICHRDLKLENWVLESGKDVWSPLKLIDFGLSTHFTPGKRLSRVVGSSYYVAPEVLKKSYSEACDLWSLGVIVYMLLSGAPPFYGRTDEAIKASIVNGEYTFPHELFRDVSDEAMAFVSTLLSYNTEYRYTAEQALTHSWL 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15707.3309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A3_ECTSI3.030e-12591.67Ca2+/calmodulin-dependent protein kinase, EF-Hand ... [more]
A0A6H5JF21_9PHAE3.830e-12391.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPA7_9STRA3.060e-7157.87Kinase-like domain-containing protein n=1 Tax=Trib... [more]
F0YMM1_AURAN9.670e-6654.69Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0YI89_AURAN8.440e-6153.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
B8CD83_THAPS1.170e-6049.74Protein kinase domain-containing protein (Fragment... [more]
A0A7S2U7Z8_9STRA3.980e-5949.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
W7T4K4_9STRA6.350e-5848.94Calcium-dependent protein n=3 Tax=Monodopsidaceae ... [more]
A0A1Z5JZ12_FISSO3.550e-5748.94Protein kinase domain-containing protein n=2 Tax=F... [more]
A0A7S2KB29_9STRA4.210e-5748.40Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15707contigH-paniculata_contig15707:701..5531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1.7e-54
Seed eggNOG ortholog44056.XP_009041649.1
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons4
Model size591
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15707.3309.1prot_H-paniculata_contig15707.3309.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15707 701..5516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.4791777-CDS-H-paniculata_contig15707:700..8741622929253.4791777-CDS-H-paniculata_contig15707:700..874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 701..874 -
1691480788.6265967-CDS-H-paniculata_contig15707:700..8741691480788.6265967-CDS-H-paniculata_contig15707:700..874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 701..874 -
1622929253.492303-CDS-H-paniculata_contig15707:2738..28481622929253.492303-CDS-H-paniculata_contig15707:2738..2848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 2739..2848 -
1691480788.6396244-CDS-H-paniculata_contig15707:2738..28481691480788.6396244-CDS-H-paniculata_contig15707:2738..2848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 2739..2848 -
1622929253.5051568-CDS-H-paniculata_contig15707:3720..38981622929253.5051568-CDS-H-paniculata_contig15707:3720..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 3721..3898 -
1691480788.6526177-CDS-H-paniculata_contig15707:3720..38981691480788.6526177-CDS-H-paniculata_contig15707:3720..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 3721..3898 -
1622929253.51984-CDS-H-paniculata_contig15707:5402..55161622929253.51984-CDS-H-paniculata_contig15707:5402..5516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 5403..5516 -
1691480788.6613204-CDS-H-paniculata_contig15707:5402..55161691480788.6613204-CDS-H-paniculata_contig15707:5402..5516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15707 5403..5516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.5322475-UTR-H-paniculata_contig15707:5516..55311622929253.5322475-UTR-H-paniculata_contig15707:5516..5531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15707 5517..5531 -
1691480788.6693702-UTR-H-paniculata_contig15707:5516..55311691480788.6693702-UTR-H-paniculata_contig15707:5516..5531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15707 5517..5531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15707.3309.1

>prot_H-paniculata_contig15707.3309.1 ID=prot_H-paniculata_contig15707.3309.1|Name=mRNA_H-paniculata_contig15707.3309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MIMDLATGGELFNLVTKNPGDCATEMEIRRMLTNMLSAVGYMHRHGIVHR
DLKLENWLMQAPGDTTAIKLIDFGLSKHFVEEQHMQQAVGSTYYVAPEVL
QGSYGPKCDMWSMGVIAYMMVSGAPPFWGNGDAQVRAKIVRGEYDMPDVL
FQHLSADAKDFIAKMLVVDPKKRLSAEQALAHPWLRRATPR*
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mRNA from alignment at H-paniculata_contig15707:701..5531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15707.3309.1 ID=mRNA_H-paniculata_contig15707.3309.1|Name=mRNA_H-paniculata_contig15707.3309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4831bp|location=Sequence derived from alignment at H-paniculata_contig15707:701..5531- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGACACATCTTCATGATCATGGATCTTGCCACGGGTGGGGAGCTCTT
CAATCTCGTCACCAAGAACCCCGGAGACTGTGCCACCGAAATGGAGATCC
GACGTATGCTCACCAACATGCTCAGCGCGGTGAGGATTGTACCCTTGTAT
TACACGTATATACTGGGTCCCAGCCGGATTGCCACAGGCGCGCCTTAAAT
CGAATGTTTGGGCAGTGAAATGGAGCGTTTGGTCGTGATATGACTATTTC
ATTTTTTGGGGGAGGGGGAGTGGGATAAATCCAAACGTCTTATCGGAAAC
ATGAGGGCTTGTGGGTTTTCGCTCGCATCAGTGAGCAAAGGGCACAGCCA
CCCCCTCTTTTGAACATGCTCTCAGATTCGGCATGGTAGTGATGCACAAT
TTCGGAAGACAATAGAGGTTGACTCAGGATTCAAGTCAGGGCCAGGAAAA
TCCCCAGGTCCACAAATTCGCGAACGCTCCCAATATTCTCAGACTACTTT
ACACTCGACAGAACTGAAGAGGATGCCGCGGTTAAACTATGTGAAGAGGT
ACAGCAAACGAACTATGTATCATGTGGGTCGACAGCGGTAGTTCGACAAC
GCACAGTGTACGTACTGTACTGTAGATCATTGTACAAGGTGCAAAGCCCT
TCACGACGCTGCTACCCGGAAACAAGCCATGGACACACATCTTCGCTTTT
GACCCACGAAAATTTGAGTGTCTTTTTGGCCTGAAGTCGTCGAGTGTTTT
TTTTGTTTTTTTTTGCGAATTTGGTCGTTATATCGAAGCAAATATGTCCG
GAGTCCGACCTGAGGCCATGCATTTTTGATTTATGCAGAGCCTCCCATGC
ACGCATGTGAACAAGCAGCAAGAGTTGCTCAATGATAAAGGAGGGTCTCT
AAGTAAAGGGGGGTCATGTATGAAATCGCACGTTCTATAGAACACAGCCC
AAGAATTTTTGTTTTTACGTTTTATTTACGTCATCATCTAGTGCCGCACC
TTGACAATGGGTTTTCCTAAAATGCTGAAAAAGGGGATATCATAGTAATG
CCACCCCTGGGGCCCGAGTAGAGTTTGCCCCAGTGCGTCGTCAAATATAT
AAAATTTCGTTTCACTTGGTTTTACTATGGGGTACTCCCCGACCCCTCCA
CGAAGCTGGCTCCAGGGTTGGTGCCACGCTGCGGAGCGGTGCAGCGTTTG
GGTGATGTTAGACGCTACCGGGGCCCGTGTAGACCTCCACCAATGCACTC
TTGGCCTAGGGGTCAGGGTCTGGGTTACGGCTACAGCTATTCCCGGTGTT
CGCTTCGCTCGTATCCGTGCCCGACGAATCGTAAACTAAATGTGTAAAAA
CTACTCGAAACTTCGTAGATTCGACGATGAACAGGGTTAATTTCCCTCCA
GAGTTGGCAGGGAATGTAAGCTTGTCCTCTCGGAGAATACTTTCGTCTAC
TACCCCTTTGGGACAAAAGTTGAGGTCAAACCCCTTATCATACCCCGGGT
AGATGAAAAATATTCTCTCTTGGGAAGTTTTTGATGGACTGGAATTGTGT
TGTTTTGTTTCGTTTCATCAGATGGTTACATCTGAACGGCCTACGTTGCA
TCTCTGTTGGTTTCGATACTGGGCATATTGCAGGTCGGCTATATGCACAG
GCACGGCATCGTGCACCGGGATCTGAAACTGGAAAACTGGCTGATGCAGG
CCCCCGGAGACACCACGGCAATCAAGCTCATCGACTTCGGCCTCTCCAAG
CACTTCGTTGAAGAGCAGCATATGCAACAAGCCGTTGGTTCCACATACTA
CGTAGCTCCAGGTAAGGAATCGTTCTCTTGTGACAAGCATCCAAGCTTCT
TCTCTATCCTACCTAGAAAAGTACACACAGCGACGCCGTCGCCGCCGCAG
CCGACTTAGCCGTGACCTTGCTGCCATGCGATGCGTGAGGCCTCTAGGAG
TACGCGACATGAACTGCTTGGGTATGTAGCTGTGGCTCTAATAATAGCAG
TATCGCTAGTCTTGGGTACTTACTCCGGGAAGACTGTCGTTGTTGTCGCT
GGTTTTTGACACATTTTTCAAAATCTTTACTCGAGTAACTTGCATTAAAT
GGATCTCTGATTATGGACACGGATGGCTACTTTGTATGGTCTTGGCGAGG
AGCCGATGACCTTCGGTAGGTCGAGCAGAAGGATAATACGGTCAGTAACA
CCGACCACACGGGGATAGCTCTGGCTGTATGTACGAACTAACTTGTATTT
TGCAATTCTCTCATCTCATAAGTTGCGCTTTATCTGCTCGCCTTGACGAG
AAACGGCGGAATATTTTCTTCGTGTGGTGATCAGGCTGGAATATTAGATA
CAGTCGCGGGACCCCTTTGAGGTCACCTAGTGTTTTAATTTTCAACGACC
TCTGAAAGGGTTACGTACCTTATCATGTATTTCGCGGTGTGAAACACACG
AAGTATATTTCGCTTCGTGTGGGCCATTCTCCAGAGTATTCGTCTCCTGC
GGGTCGGAGATAGCTACAAAGCTGTTCCCAATATGATGCGAAATACCGAT
GGGTGTTGTGTAGGGGACCGGATCTCGGCATCCTCAGAAGCGTCAGCAAC
ATCCTCTGCACCGTTGTCACGAACTGATGAACTGGTGAACGTGTTTTTCC
TCATTTGGTTCTTGGTCGATAATTGCTTGGCAGAGGTACTACAAGGTTCG
TACGGCCCCAAGTGCGATATGTGGAGCATGGGCGTGATTGCGTACATGAT
GGTGTCTGGTGCGCCTCCCTTCTGGGGCAACGGAGATGCACAGGTGAATT
GATGTTTTGGTTCTTGTGGAGAAGTTGGGATGACCGATGGATGATGACAT
AATGTCCCAGGTGGTGGTGGTGGTGGTGGTGATGATGGTGTGGTGGTGGA
TTCTTCTTGAGGACGTTTCAGGCGTGGTTTTACGTGCCGTGAGTGCAATG
GTCCTACAATCGGTCATGATGGTTGGACATCCGAGGTGTGTTTGTTGTCG
GTTTGCCACTTTACTTGTCGATTTTCTCAACAAATGAGCGCCTACGCTCA
GTGTTTCGTCTGTGCTCTGTTGTGTGTGCTTGTGTCAACAACCCCTCCAA
AACGATGCTCGCCGGCGTCTGCGAGGCCAGGAAAGCATAGAACCGTCCAA
CTCCTGGTTGACAGCGATAGAGGACCTGTATAGCTACTACCTCTTGCAAA
AACTCGAGCCCAGTTGTACGTACTAATTCCAGCGCACAAACGGCTCGCAT
GCATCGAGTGATTGAGAGGAGCACAACGGTACGTCGATTGCACAACAAGT
GAACTAGTATTCCAACCTCTCGGCCAGAAACGATGATGGCGGATATCTCG
CCCCTCACCGATCAGCATGTAACGTCATTGAACATACGAACGCATCTCAC
CACTAGCGTCCATTTGTGCCTAAGATCGGGCGCCTACAGACAGGAGATGA
CGCCGTTCTAAATGAAACGCTCAATCGTGTTAAGCTGGCTTGTTATATTT
CATTGCGTAGCACGGACCACTTCCCGCTTCTGCCAGCTGAAAGCTGTTCT
TCAGGGCTTTCCAGAGCACTTGGAACTACTGTAGTTGGAGGACTTGAATC
TTTGTGTAAAGATATATGGAACTGTATCCTGAGGATACCAAATGAAAGCA
ACGAGGAAACCGTTACTCGACGTAAGATCTTTTTTGAAAGTGGTCGTTAG
GGCGCGAGAGGATGCAATCGGTAAATCCAAGCTCTTTGGGCATGGTGCTC
CACTCGTGCTGTTTAATCCTGGTGAAAGTTGGGCATAAATTACTAGCTCT
ATCTCCTTGTATGTTGGTTTCATATCTGCTTTCTGCGCGACAGCCAGTAT
TTTTGGTACTCAAGCCTACTCCAGTATATAGACTCAGTCGCGCTCGGCAC
AGTCTGTACTAAAGATGAGTCAAATCTAACCGGGGCTTTTTTTTGTTTTG
CATGTTTGAGATGCTTAGTGATGAAACTGGATCCAGTTCCTGAAGATTCA
ACGTTTCTAATAATTTTCAAGCGATCGTTCAGCACAATGTCATGAGCGTG
ATTGTCGCAGCAAATGGTGCTAGTCACTTGCACTCTGGTTGTCACCGATT
TAAGGTAAATATTGGTATTGGCTTTCTTACATATCTACCCCACTAATCCC
TTGTAACTAGCTTTGTTTCCCCTTTTATGTTACAGTATCATACGCCGTTT
TCGATTTCACAATGTTGCACCCCCCCCCCCGGAGAAATGCGAATACAAGA
CACGAATAAATACGGGAAATCTGGAATGAGTACTGTATCTATTTGAGGTG
GGGGAGATGTCCATGTGGCACAAATAATTTACAATGTACTCGATATCCCA
TGGAGCATCGGAAAAGCTCGGTCAAGTAAGAGCACTCAATCTGTACAGCA
CCATCCGGAAAAATAAACAGGACCTCTATGTGTGACCGTTCGCCGCGGAT
ATTCGACCACCTGCAGAGTGACCATTCGTAGACTTCGTAAACGAATAAAT
ACGTGTTTTACCCCCTAGACAAATAATGATAGTTCGAGATATTTGCGAGT
GCTTCATTCGTATTTGTCCGGAGGGTGCGATATTGTCATACGCCAACTAT
CTATTCGCCTGCCGGGAACGTACGGTGTACGGTTCACCCCTGCTTAATGC
CTGGCAGGTGCGAGCGAAGATCGTACGCGGGGAATACGACATGCCCGATG
TGCTTTTCCAACACCTGTCAGCGGATGCAAAGGACTTCATCGCCAAGATG
CTCGTGGTCGATCCTAAGAAACGATTGAGCGCGGAGCAGGCTCTTGCGCA
CCCTTGGCTCAGGCGAGCGACGCCAAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15707:701..5531-

>mRNA_H-paniculata_contig15707.3309.1 ID=mRNA_H-paniculata_contig15707.3309.1|Name=mRNA_H-paniculata_contig15707.3309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig15707:701..5531- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCATGGATCTTGCCACGGGTGGGGAGCTCTTCAATCTCGTCACCAA
GAACCCCGGAGACTGTGCCACCGAAATGGAGATCCGACGTATGCTCACCA
ACATGCTCAGCGCGATGATCATGGATCTTGCCACGGGTGGGGAGCTCTTC
AATCTCGTCACCAAGAACCCCGGAGACTGTGCCACCGAAATGGAGATCCG
ACGTATGCTCACCAACATGCTCAGCGCGGTCGGCTATATGCACAGGCACG
GCATCGTGCACCGGGATCTGAAACTGGAAAACTGGCTGATGCAGGCCCCC
GGAGACACCACGGCAATCAAGCTCATCGACTTCGGCCTCTCCAAGCACTT
CGTTGAAGAGCAGCATATGCAACAAGCCGTTGGTTCCACATACTACGTAG
CTCCAGGTCGGCTATATGCACAGGCACGGCATCGTGCACCGGGATCTGAA
ACTGGAAAACTGGCTGATGCAGGCCCCCGGAGACACCACGGCAATCAAGC
TCATCGACTTCGGCCTCTCCAAGCACTTCGTTGAAGAGCAGCATATGCAA
CAAGCCGTTGGTTCCACATACTACGTAGCTCCAGAGGTACTACAAGGTTC
GTACGGCCCCAAGTGCGATATGTGGAGCATGGGCGTGATTGCGTACATGA
TGGTGTCTGGTGCGCCTCCCTTCTGGGGCAACGGAGATGCACAGAGGTAC
TACAAGGTTCGTACGGCCCCAAGTGCGATATGTGGAGCATGGGCGTGATT
GCGTACATGATGGTGTCTGGTGCGCCTCCCTTCTGGGGCAACGGAGATGC
ACAGGTGCGAGCGAAGATCGTACGCGGGGAATACGACATGCCCGATGTGC
TTTTCCAACACCTGTCAGCGGATGCAAAGGACTTCATCGCCAAGATGCTC
GTGGTCGATCCTAAGAAACGATTGAGCGCGGAGCAGGCTCTTGCGCACCC
TTGGCTCAGGCGAGCGACGCCAAGGTAAGTGCGAGCGAAGATCGTACGCG
GGGAATACGACATGCCCGATGTGCTTTTCCAACACCTGTCAGCGGATGCA
AAGGACTTCATCGCCAAGATGCTCGTGGTCGATCCTAAGAAACGATTGAG
CGCGGAGCAGGCTCTTGCGCACCCTTGGCTCAGGCGAGCGACGCCAAGGT
AA
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