mRNA_H-paniculata_contig15706.3308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15706.3308.1
Unique NamemRNA_H-paniculata_contig15706.3308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15706.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15706contigH-paniculata_contig15706:841..3077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15706.3308.1prot_H-paniculata_contig15706.3308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15706 841..3077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929253.3889954-CDS-H-paniculata_contig15706:840..9361622929253.3889954-CDS-H-paniculata_contig15706:840..936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15706 841..936 +
1691480788.6015272-CDS-H-paniculata_contig15706:840..9361691480788.6015272-CDS-H-paniculata_contig15706:840..936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15706 841..936 +
1622929253.4156163-CDS-H-paniculata_contig15706:1927..21281622929253.4156163-CDS-H-paniculata_contig15706:1927..2128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15706 1928..2128 +
1691480788.6098948-CDS-H-paniculata_contig15706:1927..21281691480788.6098948-CDS-H-paniculata_contig15706:1927..2128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15706 1928..2128 +
1622929253.4294367-CDS-H-paniculata_contig15706:3029..30771622929253.4294367-CDS-H-paniculata_contig15706:3029..3077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15706 3030..3077 +
1691480788.6177628-CDS-H-paniculata_contig15706:3029..30771691480788.6177628-CDS-H-paniculata_contig15706:3029..3077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15706 3030..3077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15706.3308.1

>prot_H-paniculata_contig15706.3308.1 ID=prot_H-paniculata_contig15706.3308.1|Name=mRNA_H-paniculata_contig15706.3308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
QVCAALARFPEDLTVQYMGCGAVGNLSNSNEQNCRRLGEAGGCQLIAGAM
NAFPAERDLQHVGCAAVANLAIRNAPNARRLIKAGAPLAVQRAMDHFGED
DDIEARGQQALQWLA
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mRNA from alignment at H-paniculata_contig15706:841..3077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15706.3308.1 ID=mRNA_H-paniculata_contig15706.3308.1|Name=mRNA_H-paniculata_contig15706.3308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2237bp|location=Sequence derived from alignment at H-paniculata_contig15706:841..3077+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATGCGCCGCGCTGGCGAGGTTTCCAGAGGATTTGACCGTCCAGTA
CATGGGGTGCGGAGCAGTCGGCAATCTGTCCAATTCCAACGAGCAGGTGA
ATGCGATGGGGAGGTAAGCTGGCGTTACTTGTCACGGGAGGAACCACGGG
GCCCTCAGGGAACGTGACAGGACGAGAGAGGACGGAACGGGGTCATCGTC
GCGTCCCGTCGCTTTTCGGACGACGGAATGAAGTCCCGTCTCGTGTTTTC
ACATGATCCACACTATACGATACCAGAAACGAAAGCCTTGTGTCCTCGTG
CAGTATTTGTTCCTTGTTGTTGTTGTCAATAATACATCGCACGACTCTCT
AGCCGGCTAGGAAAGGAATGCTCACATGACCCGTAATTTTTCGCTTGTCT
CACATAGCCGATCGCGAACCGGGTCAAATATATCATATGACCAACCACGA
ACCGGCCGGGGGAAGTGAAAGACGTATGTGACTGATTGCGAACCGGGCCA
AATACCACGTGACCAATCGCGAACGAACCACTTTGTAGACTTTGCCATGT
GAAAACGATAATTCTGTAAAAAACTCTCTTTTTTTTTGGAGGACGCAACC
AAGTCCCGTCCTGTCGCATCGCGTCCCGTGAGAGGTTGCCGGTCATATAC
GATTAATCATGTTCCACGAGACCTTCCCGTCCTGTCCCATCCTATCTTGT
CGAAACATGAGCTCGCCTTGTGCGATTGATTGATCATCAGAAATCGCTTT
CGATAGGAACAAAGATTCATTTTCCGAAGGTCACGTGGTCAGCGGTTTGA
CAAGTACATACAGCATACTGTTTTGATAAGTACCCCCCTCCTTGTCTGGT
TCCGTGATAATATCCCTGAGCGCAAGTACATCTTTGGGTAGGGTTAACGA
CTGACCCTGTGTAAATGGATTAAATCTCGAGGATAGTCCTTCCTGCAACT
CGTTAGATTTCACTGTAACTTTCAAGAAACAGATCTAATTGCTAGCGGAT
AGGATGTTTGATGGGCGCGGCGTTGTTGAATGTAGGTCGGAATGCTGTCC
GTTCTCACGGTAGTACTCCAACTTACACATATACCAGAATTGCCGGAGGC
TCGGGGAAGCGGGGGGGTGCCAGCTTATCGCCGGTGCGATGAACGCTTTC
CCGGCGGAGAGAGACCTTCAGCATGTAGGGTGTGCAGCGGTGGCGAACCT
GGCGATCAGAAACGCGCCTAATGCTCGGAGGCTGATCAAGGCGGGGGCGC
CGCTCGCGGTACAGCGCGCGATGGACCATTTTGGCGAGGTGAGGTAGTGT
GGCTTTTCTTTTTGCTGTTTTACGTTCAAACAAGATTTTAATGTCGTTAG
GTATAGCCGCATTGTGGGACCTATGACACTTCAGGAGGAGTCCATGACCT
CACCATCAGCAGTGCAGGATTTCTTTATCGTTTCGATTTTTACAGAAGTA
ACCCGATGTTCGCCTATTCTTGTCCTGCACTATGCTGAAGATAAAAATGG
TCAACGCGGCGAGAAACCCACCTTGTATTGTTGGACGTGAGATGTATCAA
TCACTAGCTAGGGCTGGTTCCGCGTATTTTACAGTATCTGTCTTATCGAG
CGCATGAAAAAAGAGATAGGATAGACCAATCACAGAACCCTTCGACCAAT
CGCAGAGCTTCTTCTCTTTTCTCCTTTTTGCTGATTTTTTTATTTTATTC
CTCGATAAGACAGTGTCTTCATGTAGACGTATTCGTACATGTCATTATTC
CCGACTGGTCGTTGGGAAATGTATCTTTTGCTCGTTGTCGGGTCCGGTTC
CTGACGAGTCAATCCCTTTATCACACGTGATCACACGTGATCACACGTGA
TCACACGTGATCACACGTGACCACACATGAGAGTTCGTTTCTTGCATGGT
TGTTGTTTCCGTTTATTATGTAATTTATATATAAGAAGTTGGCGTTGAAA
CGGTTGGCACGCTAGGGTAATGATTGATGACTTAAAATGATTTGGGCACT
TTATGGCGGCTACATGATGGATTTTTTTATGTTACCTTTTCACGGTTTAG
TTCCTTTGTGACTGATGGATATTTGTGTGTGTATGAGCGTGCTTACAGAT
CGCGAGGTGGTCTGAGGCCACCGGCCTAATACGAGTTATTTGATAAAGAT
GCCCATATATGTATGACGTGCTTTGTCCGTGTTTCCCAGGACGATGACAT
AGAGGCTAGAGGGCAGCAGGCGTTGCAATGGCTCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig15706:841..3077+

>mRNA_H-paniculata_contig15706.3308.1 ID=mRNA_H-paniculata_contig15706.3308.1|Name=mRNA_H-paniculata_contig15706.3308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig15706:841..3077+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATGCGCCGCGCTGGCGAGGTTTCCAGAGGATTTGACCGTCCAGTA
CATGGGGTGCGGAGCAGTCGGCAATCTGTCCAATTCCAACGAGCAGCAGG
TATGCGCCGCGCTGGCGAGGTTTCCAGAGGATTTGACCGTCCAGTACATG
GGGTGCGGAGCAGTCGGCAATCTGTCCAATTCCAACGAGCAGAATTGCCG
GAGGCTCGGGGAAGCGGGGGGGTGCCAGCTTATCGCCGGTGCGATGAACG
CTTTCCCGGCGGAGAGAGACCTTCAGCATGTAGGGTGTGCAGCGGTGGCG
AACCTGGCGATCAGAAACGCGCCTAATGCTCGGAGGCTGATCAAGGCGGG
GGCGCCGCTCGCGGTACAGCGCGCGATGGACCATTTTGGCGAGAATTGCC
GGAGGCTCGGGGAAGCGGGGGGGTGCCAGCTTATCGCCGGTGCGATGAAC
GCTTTCCCGGCGGAGAGAGACCTTCAGCATGTAGGGTGTGCAGCGGTGGC
GAACCTGGCGATCAGAAACGCGCCTAATGCTCGGAGGCTGATCAAGGCGG
GGGCGCCGCTCGCGGTACAGCGCGCGATGGACCATTTTGGCGAGGACGAT
GACATAGAGGCTAGAGGGCAGCAGGCGTTGCAATGGCTCGCCGACGATGA
CATAGAGGCTAGAGGGCAGCAGGCGTTGCAATGGCTCGCC
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