mRNA_H-paniculata_contig157.3303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI) HSP 1 Score: 157 bits (396), Expect = 9.610e-45 Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKNHALQDMKERGQE 268
LYRDCLRLVDHIASKSPKGQQLR+ILRTEFKKNMGETDP KIE +KG AIRGLSNYLVHESGSNDP+LK+RM+AVK HAL D+K+R QE
Sbjct: 14 LYRDCLRLVDHIASKSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQE 102
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.980e-20 Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMD 220
LYRDCLRL +H+ +S KG +R ++ TEF+K++ ETDPA++ I+K +A+RGLSNY +HES S D +LK RM+
Sbjct: 15 LYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARME 87
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: W7T1T1_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T1T1_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 5.820e-20 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKNHALQDMKERGQEEVPR 280
LYRDCLR+ DHIASKSPKG LR +LR+EFKKN D ++E +K +A RGL+NYL++ESGS +P+++ RM+ + ++ + E R
Sbjct: 22 LYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERER 114
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: A0A7S2W976_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W976_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.330e-18 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKN 232
LYRD LRLV HI +S KGQ LRM + EF+K+ DP +IE ++ +A+R LSNY+++ESGS DPRL+ERM A N
Sbjct: 24 LYRDLLRLVSHIGGQSAKGQALRMTVSMEFRKHQHVEDPKEIEALRANAVRALSNYMLYESGSKDPRLRERMKASLN 100
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: A0A482SGE8_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGE8_9ARCH) HSP 1 Score: 87.8 bits (216), Expect = 1.000e-17 Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKNHALQDMKE 256
LYRDCLRLV HIA +S KG+ +R +LR EF+KN DPAKIE +K +A+RGL+NYL+ ES + D +L+++ + ++D E
Sbjct: 36 LYRDCLRLVKHIAGRSQKGENIRRVLRHEFRKNAKLEDPAKIEQLKSNAVRGLANYLMIESATKDTKLQKQANIFAEKEIKDANE 120
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: W4GBX7_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4GBX7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 5.560e-17 Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKNHALQD 247
LYRDCLRL +HI K+ KG+ +R +LR EF+K++ ETD KIE +K +A+RGLSNYLV + S D +LK+ + + +D
Sbjct: 14 LYRDCLRLANHIGGKTKKGEAIRSMLRAEFRKSIHETDEVKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAKD 95
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: A0A7S2CG24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG24_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 8.630e-17 Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLK 208
LYRDCLRLV H+ +S KG+ ++M++ TEF+K+ TD ++E ++ +A+R LSNY+V+ES S DPRLK
Sbjct: 21 LYRDCLRLVSHVGGQSAKGRAMKMMVTTEFRKHADVTDEKELEALRANAVRALSNYMVYESSSKDPRLK 89
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: A0A7S1ZML8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZML8_TRICV) HSP 1 Score: 84.3 bits (207), Expect = 2.220e-16 Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 2
Query: 2 LYRDCLRLVDHIA-SKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKNHALQDMKERG 262
LYRDCLRL+ HIA SPK LR ++++EF KN E DPAKIE MK AIR LSNY+++ESG+ D +L + M+ + + G
Sbjct: 39 LYRDCLRLIRHIAPGHSPKAMALRAMVQSEFSKNRDEKDPAKIESMKAGAIRALSNYMLYESGAKDQKLGKAMNKFNQDTISGIDRSG 126
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: A0A485KXE9_9STRA (Aste57867_12385 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KXE9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.480e-16 Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDAVKNHALQD 247
LYRDCLRL +HI K+ KG+ +R +LR EF+K+M ETD IE K +A+RGLSNYLV + S D +LK+ + + +D
Sbjct: 13 LYRDCLRLANHIGGKTKKGEAIRGMLRAEFRKHMHETDEIAIENAKANAVRGLSNYLVLANSSKDGKLKQAIRTTDEQSAKD 94
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Match: H3GH29_PHYRM (Complex1_LYR_dom domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH29_PHYRM) HSP 1 Score: 81.3 bits (199), Expect = 1.090e-15 Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 2 LYRDCLRLVDHIASKSPKGQQLRMILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERM 217
LYRDC+RL HI S KGQ ++ ++R EF K ETDP K+E +K +AIRGLSNYL+ + S D RL + M
Sbjct: 14 LYRDCMRLAQHIGGNSKKGQAIKDLVRREFAKGRDETDPEKVEALKANAIRGLSNYLMLANSSKDQRLHDAM 85 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig157.3303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig157.3303.1 >prot_H-paniculata_contig157.3303.1 ID=prot_H-paniculata_contig157.3303.1|Name=mRNA_H-paniculata_contig157.3303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp MILRTEFKKNMGETDPAKIEIMKGSAIRGLSNYLVHESGSNDPRLKERMDback to top mRNA from alignment at H-paniculata_contig157:25653..28570+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig157.3303.1 ID=mRNA_H-paniculata_contig157.3303.1|Name=mRNA_H-paniculata_contig157.3303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2918bp|location=Sequence derived from alignment at H-paniculata_contig157:25653..28570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig157:25653..28570+ >mRNA_H-paniculata_contig157.3303.1 ID=mRNA_H-paniculata_contig157.3303.1|Name=mRNA_H-paniculata_contig157.3303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig157:25653..28570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |