mRNA_H-paniculata_contig157.3302.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig157.3302.1
Unique NamemRNA_H-paniculata_contig157.3302.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI)

HSP 1 Score: 565 bits (1455), Expect = 8.180e-191
Identity = 306/536 (57.09%), Postives = 373/536 (69.59%), Query Frame = 1
Query:  358 PPLFRLIST-PSDGPGSGSVGLKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELPQFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLRQSPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGT---------RPKHKGADLYKYGHMRVRGLLETEPR-----LLKDEHHHKVAFQFSSLASLTKDPNQWLMELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGG-EPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLS--YRIPPGKAVPLPLLPIPYLLPAPRYNFD----AGDKPWV--WDQNYAIPDKFGKMWTG 1893
            PPL+RL+ST PSD   +GSVGL DLLSG F  ALL NYMVD ALL+   PRL  VPV +VHGFKP T +  +LR+QC  ++ G+K  +PELP++GT+HAKM++LKFP G+RV VLTANF+  DVT KSQGVWYQ+FP R S +C F+  L+ +L K+GGP +AFA +L +YDF  ARVALVPSVPGT         +P HKG DL+KYGHMRVR LL  E        LK E  HKV  Q SSLASLTK PN+WL E+L SFM  +D    + KK E    S S   A   +L++ LR+VWP++EA+R SS+GW AGGSI C T +M+GG +   +M  + +N P PELRPLLRKW+GNPAV+RT +APHIKSY+RYRE     G E RVDGDEVAWFLL+SSNLSRSAWG+L+K S  L +RSFEMG+MFLPSLL     R        G     A+ FTCTPGEMGL QR PLS  Y    GK +PL LLP+PY+LPAPRY+FD    A ++PWV   DQN +  D+ G+ W G
Sbjct:   80 PPLYRLLSTSPSDRASTGSVGLDDLLSGDFESALLCNYMVDYALLVRCAPRLGSVPVTIVHGFKPGTQDEVNLRSQC-AVNPGVKLRYPELPEYGTNHAKMIILKFPTGIRVAVLTANFIVVDVTDKSQGVWYQDFPKRTSGSCAFQEDLMGFLFKVGGPASAFASTLGEYDFRGARVALVPSVPGTGGNTPGTGGKP-HKGRDLHKYGHMRVRALLAREKEDGTGAKLK-EGGHKVLCQISSLASLTKTPNRWLSEILASFMPLED----EGKKAEPTRRSVSEDEAQATLLEQHLRVVWPSVEAVRTSSQGWIAGGSICCNTVNMYGGKYKWPNMDNYRSNTPLPELRPLLRKWKGNPAVNRTRDAPHIKSYLRYREVAGENGTETRVDGDEVAWFLLTSSNLSRSAWGYLNKASTDLTLRSFEMGVMFLPSLL-----RSPSQDSDDGNAAAKASGFTCTPGEMGLTQRFPLSLGYDCEAGKGLPLSLLPLPYVLPAPRYDFDKSQDANERPWVRDQDQNPSSLDRNGEAWQG 603          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: W2QLN8_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QLN8_PHYPN)

HSP 1 Score: 286 bits (733), Expect = 8.170e-85
Identity = 187/514 (36.38%), Postives = 257/514 (50.00%), Query Frame = 1
Query:  418 LKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLR-------------QSPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEP-----RLLK----DEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            L DLL G F+  LLTNYM D+  L    PRL  VPV++VHG +    +   +  +C   S  + P  P LP  +GTHH KM+V  +   VRV + TANF+  D   K+QG+WYQ+F L+                + DFE  LV YL  LG PV  F   L+++DF++ARVALVPSVPG    HKG D+ KYGH+R   +L T       RLLK        + +  QFSSL SL +   +WL  E   SF+  K                     ++ ++  + L ++WP++E +RNS +GW +G SIPC   +M                  +P L   LRKW+    +HR    PHIKSY R+  +    GE       +AW +++SSNLS++AWG L K   QL++RS+E+G+MFLP LLG++   ++G+     T    AA  +   G                    P  LLP+PY  P   YN    D+PWVWD     PD FG  +
Sbjct:   47 LSDLLEGEFSRCLLTNYMYDLPWLFAECPRLTEVPVLLVHGER----DRQGMTKECREYSN-VTPVVPPLPIPYGTHHTKMLVALYSEKVRVAIFTANFLSNDWNSKTQGLWYQDFGLKVLADSEDEEEETVSGSSSDFEVDLVHYLSSLGAPVKLFCAELKRFDFSTARVALVPSVPGV---HKGKDMEKYGHLRSYSILLTYTLCCMNRLLKMYKIPPTDNPLICQFSSLGSLDE---KWLFGEFAESFLPGKK------------------IISSTSMPIQALHIIWPSVEDVRNSLEGWNSGRSIPCPLKNM------------------KPFLHKYLRKWKPPSELHRQNAMPHIKSYARFNPSDDGAGE-------LAWAIVTSSNLSKAAWGTLQKNKTQLMIRSYELGVMFLPPLLGRQ---RNGTPSRLVTIASKAAEHSDVAG----------------SDTQPTELLPLPYSFPLTTYN-PKNDEPWVWDLVRESPDIFGNAY 486          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A833TKC6_PHYIN (Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TKC6_PHYIN)

HSP 1 Score: 284 bits (727), Expect = 4.140e-84
Identity = 187/505 (37.03%), Postives = 250/505 (49.50%), Query Frame = 1
Query:  418 LKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLR-------------QSPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            L DLL G F+  LL NYM D+  L    PRL+ VPV++VHG +       + R   N     + P  P LP  +GTHH KM+V  +P  VRV + TANF+  D   K+QG+WYQ+F L+                + DFE+ LV YL  LG PV  F   L+++DF+SARVALVPSVPG    HKG D+ KYGH+RVR LL+       D   + +  QFSSL SL +   +WL  E   S +  K               STS          + L ++WP +E +RNS +GW +G SIPC   +M                  +P L   LRKW     +HR    PHIKSY R+  +    GE       + W +++SSNLS++AWG L K   Q ++RS+E+G+MFLP LLG+  +  +G+S    T    AA  +    +                   P  LLP+PY  P   YN    D+PWVWD     PD FG  +
Sbjct:   47 LSDLLEGDFSRCLLANYMFDLPWLFTECPRLKEVPVVLVHGERDRQGMTKECRDYSN-----VTPVAPPLPIPYGTHHTKMLVALYPERVRVAIFTANFLSNDWNTKTQGLWYQDFGLKVLTDSDEEEKEAVARSSSDFEADLVHYLSSLGAPVKLFCGELKRFDFSSARVALVPSVPGV---HKGKDMEKYGHLRVRKLLKMYKIPPTD---NPLICQFSSLGSLDE---KWLFGEFAESLLPGKKH-----------ISSTSMPV-------QALHVIWPAVEDVRNSLEGWNSGRSIPCPLKNM------------------KPFLHKYLRKWMPPAELHRQNAMPHIKSYARFNASEDKAGE-------LDWAIVTSSNLSKAAWGSLQKNKTQFMIRSYELGVMFLPPLLGRHSN--AGTSPRLVTIGSKAAEHSDVAEQ-------------------PTELLPLPYSFPLTTYN-PKNDEPWVWDLVREKPDIFGNAY 472          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A8K1CIS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS9_PYTOL)

HSP 1 Score: 280 bits (716), Expect = 2.740e-82
Identity = 185/543 (34.07%), Postives = 263/543 (48.43%), Query Frame = 1
Query:  313 VESGEATNSDSVEKAPPLFRLISTPSDGPGSGSVGLKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLR----------------QSPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            VE    T   SV+    L RL   P +     ++GL++L  G +T+ LLTNYM D+  L  + PRL  VPV++VHG +    + + +  +C      + P  P LP  +GTHH KM VL +P   RV + TANF+  D   K+QGVW+Q+F L+                Q+   DFE  L++YL  LG PV  F + L ++DF++A VAL+PSVPG    H G  ++KYGH+RVR LL+       D   H +  QFSSL SL +   +WL  E   S M                 G T  A+    +  + L ++WP++  +RNS +GW AG ++PC   +M                  +P L   LRKW    A+HR    PHIK+Y R+        +P+ DG  V W +L+SSNLS++AWG   K   Q L+RS+E+G++FLPS                   +H   +   TP                   ++P  L+P+PY  P   YN    D+PWVWD     PD +G  +
Sbjct:   37 VEEVSVTEDASVDVLFRLTRLKDAP-ERHNRYAIGLQELFEGEYTQCLLTNYMYDLPWLFASCPRLHDVPVVLVHGER----DRHAMTQECKGYGN-VTPVAPYLPIPYGTHHTKMAVLLYPTKARVAIFTANFIAIDWHNKTQGVWFQDFELKALGEDDASEEKKQHQKQAAVADFERDLIEYLSTLGTPVVTFCKELSRFDFSTATVALIPSVPGA---HTGKAMHKYGHLRVRALLKHFAVAPSD---HPLICQFSSLGSLDE---KWLFGEFAGSLMP----------------GPTQLASGGSTLPIKALHIIWPSVNDVRNSVEGWNAGRAVPCPLKNM------------------KPFLHKYLRKWTPPSALHRQNAMPHIKTYARF--------DPKRDGC-VDWAILTSSNLSKAAWGAYQKNQSQFLIRSYELGVLFLPS-----------------ASSHQHLSVVGTPAAN-------------TEDSIPTRLMPLPYAFPLTTYN-PKEDEPWVWDLVRDEPDVYGNCY 490          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A6A4E9V0_9STRA (Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E9V0_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.530e-81
Identity = 182/505 (36.04%), Postives = 252/505 (49.90%), Query Frame = 1
Query:  418 LKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLR---------------QSPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYR-IPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFG 1878
            L +LL G FT  LLTNYM D+  L    PRL  VPV++VHG +    +   +  +C   S  + P  P LP  +GTHH KM+V  +P  VRV + TANF+  D   K+QGVW+Q+F L+                +   DFE+ LV YL  LG  V  F R L+++DF+SARVALVPSVPG    HKG D+ KYGH+RVR LL+       D   + +  QFSS+ SL +   +WL  E   SF+                 G  + +     V  + L ++WP++E +RNS +GW +G SIPC   +M                  +P L   +RKW     +HR    PHIKSY R+  + +A GE       + W +++SSNLS++AWG L K   Q ++RS+E+G+MFLP LL    +                    C P  +  +      +  +   ++ P  LLP+PY  P   YN    D+PWVWD     PD FG
Sbjct:   75 LNELLEGEFTRCLLTNYMYDLPWLFAECPRLRDVPVLLVHGER----DRQGMMKECREYSN-VTPVAPPLPIAYGTHHTKMLVALYPEKVRVAIFTANFLSNDWNTKTQGVWFQDFGLKVLDDGEEEKEAVAPNSAAINDFEADLVHYLSSLGAQVKIFCRELKRFDFSSARVALVPSVPGY---HKGKDMEKYGHLRVRKLLKMYQVPPTD---NPLICQFSSMGSLDE---KWLFGEFAESFLP----------------GKKNISPTPMPV--QALHIIWPSVEDVRNSLEGWNSGRSIPCPLKNM------------------KPFLHKYIRKWTPPEELHRQNAMPHIKSYARFNPSDEAVGE-------LDWAIVTSSNLSKAAWGALQKNKTQFMIRSYELGVMFLPQLLKPPGN--------------------CPPVRLVTLGSKAAGHSGVAVSESQPTALLPLPYGFPLTTYN-PKKDEPWVWDLVRDSPDIFG 501          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: H3GC32_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GC32_PHYRM)

HSP 1 Score: 276 bits (705), Expect = 1.180e-80
Identity = 187/516 (36.24%), Postives = 249/516 (48.26%), Query Frame = 1
Query:  418 LKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLRQSPTC-----------------DFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQS------GSSGGTG-TGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            L DLL G FT  LLTNYM D+  L    PRL  VPV++VHG +         R   N     + P  P LP  FGTHH KM+V  +P  VRV + TANF+  D   K+QGVW+Q+F L+                      DFE  LV YL  LG  V  F   L+++DF+ A VAL+PSVPG    HKG D+ +YGH+RVR LL+T      D   + +  QFSSL SL +   +WL  E   SF+                 G  + + ++  V  + L ++WP++E +RNS +GW +G SIPC   +M                  +P L   LRKW     +HR    PHIKSY R+  + +A G        + W +++SSNLS++AWG L K   Q +VRS+E+G+MFLP LL  ++   S      GS    G +G  D  +    P E                      LLP+PY  P   YN    D+PWVWD     PD FG  +
Sbjct:   58 LHDLLEGEFTRCLLTNYMYDLPWLFSECPRLRQVPVLLVHGERDRQGMTKKCREYAN-----VTPVAPPLPIPFGTHHTKMLVALYPDKVRVAIFTANFLSGDWNTKTQGVWFQDFSLKILDDSEXXXXXXXXTASSRGGNDFEEDLVHYLSSLGAQVKLFCGELKRFDFSRAHVALIPSVPGV---HKGKDMERYGHLRVRKLLKTFNVPQTD---NPLICQFSSLGSLDE---KWLFGEFAESFLP----------------GKKNISASSMPV--QALHIIWPSVEDVRNSLEGWNSGRSIPCPLKNM------------------KPFLHKYLRKWTPPSVLHRQNAMPHIKSYARFDPSDEAAGA-------LDWAIVTSSNLSKAAWGTLQKKKTQFMVRSYELGVMFLPPLLAHQNGGTSPHLVTIGSKAAAGHSGVEDFESSEKQPKE----------------------LLPLPYGFPLTTYN-PKQDEPWVWDLVRDSPDIFGNAY 493          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A5D6XVY7_9STRA (Carbonic anhydrase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVY7_9STRA)

HSP 1 Score: 275 bits (702), Expect = 1.560e-77
Identity = 189/531 (35.59%), Postives = 262/531 (49.34%), Query Frame = 1
Query:  364 LFRLISTPSDGPGSGSVGLKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPL-------------------RQSPTCDFESTLVDYLEKLGGPVTAFA-RSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLK-DEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            L RL   P D     ++GL++LL G F   LL+NYMVD+  LL   PRL  VPV++VHG +   +    + T C  ++  +    P LP  +GTHHAKM+V  +P  VRV + TANF+  D   K+QGVW+Q+F L                   R     DFE+ LV YL  LG  V AF  R + ++DF+ A VAL+PSVPG    HKG+D+ K+GH+RVR LL+    LLK     + +  QFSS+ SL +   +WL  E   S +             +G  G T T+        + L L+WP++E +RNS++GW AG ++PC   +M                  +P L   LRKW     +HR    PHIK+Y R+        +       + W +L+SSNLS++AWG L K   Q L+RS+E+G++FLP LL K     S +S     G+   AA     GE   +                   LP+PY  P   Y+    D+PWVWD     PD FG  +
Sbjct:  304 LTRLRGAP-DAHNQHAMGLRELLDGAFESVLLSNYMVDVDWLLGECPRLRDVPVLLVHGERDRGA----MLTACRALAN-VTLVAPPLPIAYGTHHAKMLVAVYPEKVRVAIFTANFIAIDWENKTQGVWFQDFGLKTLSDDAEADAVGSAVTVERGPAELDFEADLVAYLSALGARVAAFCKRHVARFDFSGANVALIPSVPGV---HKGSDMEKFGHLRVRKLLQ----LLKVPPSDNPLICQFSSMGSLDE---KWLFGEFAQSLL-------------KGKKGITGTSAPV-----QALHLIWPSVEDVRNSTEGWNAGRAVPCPLKNM------------------KPFLHKYLRKWAPPERLHRKNAMPHIKTYARFEAPTSGRDDDDAAAGTLDWAILTSSNLSKAAWGALQKGDSQFLIRSYELGVLFLPQLLRKTSGSDSSASKLVVLGSK--AADRSRAGEAPFV-------------------LPLPYSFPLKTYDPKV-DEPWVWDLVREDPDVFGNCY 760          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A2D4BMS2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS2_PYTIN)

HSP 1 Score: 277 bits (708), Expect = 2.070e-76
Identity = 189/516 (36.63%), Postives = 250/516 (48.45%), Query Frame = 1
Query:  409 SVGLKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLRQ---------------------SPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            +VGL DLLSG F+  LLTNYM D+A L    PRL  VPV++VHG +   +  +D R   N     +    P LP  +GTHH KMMV+ +   VRV + TANF+  D   K+QGVW+Q+F L                        P  DF+  LV+YL  LG PV AF R L ++DF++A VALVPSVPG    H GA   KYGH+RVR +L+       D   H +  QFSSL SL +   +WL  E   S M +                     T+T   +K  L +VWP+++ +RNS +GW AG ++PC   +M                  +P L   LRKW    A+HR    PHIK+Y R+        +P   G  V W LL+SSNLS++AWG L K   QL++RS+E+G++FLP L      R  G     G   + A   + T                          LP+PY  P   Y+  A D+PWVWD     PD FG  +
Sbjct:  642 AVGLSDLLSGEFSRVLLTNYMYDLAWLFNECPRLADVPVVLVHGERDREAMQHDCRGFTN-----VTAVAPRLPIAYGTHHTKMMVVVYATKVRVAIFTANFIPIDWNNKTQGVWFQDFELATIGEDDEEDERKRADLGAGAGVEPVVDFKRDLVEYLSTLGAPVVAFCRELERFDFSTATVALVPSVPGY---HTGAAKDKYGHLRVRRILQHFNVPRSD---HPLICQFSSLGSLDE---KWLFGEFAESLMPRP------------------LPTSTPMPIKS-LHIVWPSVDDVRNSIEGWHAGRAVPCPLKNM------------------KPFLHKYLRKWTPPAALHRQNAMPHIKTYARF--------DPSQPG-AVDWALLTSSNLSKAAWGALQKNGTQLMIRSYELGVLFLPQL----SSRSLGQFKVIGVDNNSAEVSSSTV------------------------YLPLPYGFPIKTYD-PARDEPWVWDLVREDPDVFGNCY 1068          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A0W8DNG8_PHYNI (HIT domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DNG8_PHYNI)

HSP 1 Score: 261 bits (666), Expect = 2.240e-74
Identity = 184/553 (33.27%), Postives = 255/553 (46.11%), Query Frame = 1
Query:  418 LKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGND------------------------LRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLR-------------QSPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGAD--------------------LYKYGHMRVRGLLETEPRLLK----DEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHDAAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAGDKPWVWDQNYAIPDKFGKMW 1887
            L DLL G F+  LLTNYM D+  L    PRL  VPV++VHG +    +G D                        +  +C   S  + P  P LP  +GTHH KM+V  +   VRV + TANF+  D   K+QG+WYQ+F L+                + DFE  LV YL  LG PV  F   L+++DF++ARVALVPSVPG   K KG +                    L +YG +R     +    LLK        + +  QFSSL SL +   +WL  E   SF+  K                     ++ ++  + L ++WP++E +RNS +GW +G SIPC   +M                  +P L   LRKW+    +HR    PHIKSY R+  +    GE       +AW +++SSNLS++AWG L K   QL++RS+E+G+MFLP LLG++   ++G+     T    AA  +   G                    P  LLP+PY  P   YN    D+PWVWD     PD FG  +
Sbjct:   68 LSDLLEGEFSRCLLTNYMYDLPWLFAECPRLTEVPVLLVHGERDR--QGYDVAYIPLKCQLMKLMNVLLILCRYRMTKECREYSN-VTPVVPPLPIPYGTHHTKMLVALYSEKVRVAIFTANFLSNDWNSKTQGLWYQDFGLKVLADSEDEEEETVSGSSSDFEVDLVHYLSSLGAPVKLFCAELKRFDFSTARVALVPSVPGVH-KGKGEEEALSSIIIRLLMLTFENLYLLNRYGEIRASPRTQASCSLLKMYKIPPTDNPLICQFSSLGSLDE---KWLFGEFAESFLPGKK------------------IISSTSMPIQALHIIWPSVEDVRNSLEGWNSGRSIPCPLKNM------------------KPFLHKYLRKWKPPSELHRQNAMPHIKSYARFNPSDDGAGE-------LAWAIVTSSNLSKAAWGTLQKNKTQLMIRSYELGVMFLPPLLGRQ---RNGTPSRLVTIASKAAEHSDVAG----------------SDTQPTELLPLPYSFPLTTYN-PKNDEPWVWDLVRESPDIFGNAY 550          
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Match: A0A225WPR3_9STRA (Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPR3_9STRA)

HSP 1 Score: 271 bits (694), Expect = 7.180e-74
Identity = 168/437 (38.44%), Postives = 232/437 (53.09%), Query Frame = 1
Query:  364 LFRLISTPSDGPGSGSVGLKDLLSGGFTEALLTNYMVDMALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPELP-QFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLRQ------------SPTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKHKGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWLM-ELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIEAIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRKWQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLSRSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDD 1632
            L RL + P D     + GL DLL G FT  LLTNYM D+  L    PRL  VPV++VHG +       + R   N  S       P LP  +GTHH KM+V  +P  VRV + TANF+  D   K+QG+WYQ+F L+             +   +FE+ L  YL  LG PV  F   L+++DF++ARVALVP+VPG    HKG D+ KYGH+RVR LL+       D   + +  QFSSL SL +   +WL  E   SF+              G    +ST+  T     + L ++WP++E ++NS +GW++G SIPC   +M                  +P L   LRKW     VHR    PHIKSY R+     A GE       + W +++SSNLS++AWG L K + Q ++RS+E+G++FLP LLG+ ++
Sbjct:  156 LTRLRNAP-DAHNLHAKGLNDLLEGDFTRCLLTNYMFDLPWLFAECPRLRDVPVLLVHGERDRQGMTKECREYANVTSVA-----PPLPIPYGTHHTKMLVALYPEKVRVAIFTANFLSNDWNTKTQGIWYQDFGLKVLADSEDEEKEAVAGASEFEADLAHYLSSLGAPVKVFCGELKRFDFSTARVALVPAVPGV---HKGKDMEKYGHLRVRKLLKMYKVPPTD---NPLICQFSSLGSLDE---KWLFGEFAESFLP-------------GKRNISSTSMPT-----QALHIIWPSVEDVQNSLEGWSSGRSIPCPLKNM------------------KPFLHKYLRKWTPPKEVHRQNAMPHIKSYARFSPNDDAAGE-------LDWAIVTSSNLSKAAWGSLQKNNTQFMIRSYELGVIFLPQLLGRHNN 534          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig157.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE95_ECTSI8.180e-19157.09Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus T... [more]
W2QLN8_PHYPN8.170e-8536.38Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A833TKC6_PHYIN4.140e-8437.03Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora... [more]
A0A8K1CIS9_PYTOL2.740e-8234.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4E9V0_9STRA1.530e-8136.04Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophtho... [more]
H3GC32_PHYRM1.180e-8036.24Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6XVY7_9STRA1.560e-7735.59Carbonic anhydrase n=1 Tax=Pythium brassicum TaxID... [more]
A0A2D4BMS2_PYTIN2.070e-7636.63Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A0W8DNG8_PHYNI2.240e-7433.27HIT domain-containing protein n=4 Tax=Phytophthora... [more]
A0A225WPR3_9STRA7.180e-7438.44Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig157contigH-paniculata_contig157:17096..24957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score568.2
Seed ortholog evalue4.9e-159
Seed eggNOG ortholog2880.D8LE95
Preferred nameTDBP1
KEGG koko:K10862
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2031@1,KOG2031@2759
Ec32 ortholog descriptionTyrosyl-DNA phosphodiesterase
Ec32 orthologEc-00_001400.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons10
Model size2277
Cds size1878
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig157.3302.1prot_H-paniculata_contig157.3302.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig157 17468..24930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929252.654416-UTR-H-paniculata_contig157:17095..174671622929252.654416-UTR-H-paniculata_contig157:17095..17467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig157 17096..17467 -
1691480788.2321744-UTR-H-paniculata_contig157:17095..174671691480788.2321744-UTR-H-paniculata_contig157:17095..17467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig157 17096..17467 -
1622929252.8561974-UTR-H-paniculata_contig157:24930..249571622929252.8561974-UTR-H-paniculata_contig157:24930..24957Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig157 24931..24957 -
1691480788.3278372-UTR-H-paniculata_contig157:24930..249571691480788.3278372-UTR-H-paniculata_contig157:24930..24957Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig157 24931..24957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929252.704418-CDS-H-paniculata_contig157:17467..175711622929252.704418-CDS-H-paniculata_contig157:17467..17571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 17468..17571 -
1691480788.242121-CDS-H-paniculata_contig157:17467..175711691480788.242121-CDS-H-paniculata_contig157:17467..17571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 17468..17571 -
1622929252.7218966-CDS-H-paniculata_contig157:18494..187411622929252.7218966-CDS-H-paniculata_contig157:18494..18741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 18495..18741 -
1691480788.2495768-CDS-H-paniculata_contig157:18494..187411691480788.2495768-CDS-H-paniculata_contig157:18494..18741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 18495..18741 -
1622929252.7359207-CDS-H-paniculata_contig157:19064..191561622929252.7359207-CDS-H-paniculata_contig157:19064..19156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 19065..19156 -
1691480788.262382-CDS-H-paniculata_contig157:19064..191561691480788.262382-CDS-H-paniculata_contig157:19064..19156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 19065..19156 -
1622929252.7499373-CDS-H-paniculata_contig157:19568..197651622929252.7499373-CDS-H-paniculata_contig157:19568..19765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 19569..19765 -
1691480788.271658-CDS-H-paniculata_contig157:19568..197651691480788.271658-CDS-H-paniculata_contig157:19568..19765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 19569..19765 -
1622929252.7654786-CDS-H-paniculata_contig157:20371..205711622929252.7654786-CDS-H-paniculata_contig157:20371..20571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 20372..20571 -
1691480788.2791762-CDS-H-paniculata_contig157:20371..205711691480788.2791762-CDS-H-paniculata_contig157:20371..20571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 20372..20571 -
1622929252.7777007-CDS-H-paniculata_contig157:21009..212231622929252.7777007-CDS-H-paniculata_contig157:21009..21223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 21010..21223 -
1691480788.2862587-CDS-H-paniculata_contig157:21009..212231691480788.2862587-CDS-H-paniculata_contig157:21009..21223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 21010..21223 -
1622929252.7941985-CDS-H-paniculata_contig157:21631..216871622929252.7941985-CDS-H-paniculata_contig157:21631..21687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 21632..21687 -
1691480788.2936575-CDS-H-paniculata_contig157:21631..216871691480788.2936575-CDS-H-paniculata_contig157:21631..21687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 21632..21687 -
1622929252.8128154-CDS-H-paniculata_contig157:22338..225091622929252.8128154-CDS-H-paniculata_contig157:22338..22509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 22339..22509 -
1691480788.301809-CDS-H-paniculata_contig157:22338..225091691480788.301809-CDS-H-paniculata_contig157:22338..22509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 22339..22509 -
1622929252.8262362-CDS-H-paniculata_contig157:23578..236481622929252.8262362-CDS-H-paniculata_contig157:23578..23648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 23579..23648 -
1691480788.310099-CDS-H-paniculata_contig157:23578..236481691480788.310099-CDS-H-paniculata_contig157:23578..23648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 23579..23648 -
1622929252.8420472-CDS-H-paniculata_contig157:24403..249301622929252.8420472-CDS-H-paniculata_contig157:24403..24930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 24404..24930 -
1691480788.3187308-CDS-H-paniculata_contig157:24403..249301691480788.3187308-CDS-H-paniculata_contig157:24403..24930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig157 24404..24930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig157.3302.1

>prot_H-paniculata_contig157.3302.1 ID=prot_H-paniculata_contig157.3302.1|Name=mRNA_H-paniculata_contig157.3302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=626bp
MSSFYDLTAGSEGSDNDDDDDILQAAINASLLDMNNQNSRTDASSAVQSE
GGSSSGSNFSGNSRQNKRPLDAQRHAALESPQEVSISKQRKRPRSVESGE
ATNSDSVEKAPPLFRLISTPSDGPGSGSVGLKDLLSGGFTEALLTNYMVD
MALLLEAQPRLEYVPVIVVHGFKPNTSEGNDLRTQCNRISQGIKPYHPEL
PQFGTHHAKMMVLKFPRGVRVVVLTANFVDQDVTGKSQGVWYQEFPLRQS
PTCDFESTLVDYLEKLGGPVTAFARSLRQYDFTSARVALVPSVPGTRPKH
KGADLYKYGHMRVRGLLETEPRLLKDEHHHKVAFQFSSLASLTKDPNQWL
MELLTSFMAQKDGEQQDWKKPEGGAGSTSTATATRNVLKERLRLVWPTIE
AIRNSSKGWAAGGSIPCRTNDMFGGDFIRADMRRFEANDPRPELRPLLRK
WQGNPAVHRTFNAPHIKSYVRYRETCKAGGEPRVDGDEVAWFLLSSSNLS
RSAWGFLDKTSKQLLVRSFEMGIMFLPSLLGKEDDRQSGSSGGTGTGTHD
AAAFTCTPGEMGLIQRLPLSYRIPPGKAVPLPLLPIPYLLPAPRYNFDAG
DKPWVWDQNYAIPDKFGKMWTGGKN*
back to top

mRNA from alignment at H-paniculata_contig157:17096..24957-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig157.3302.1 ID=mRNA_H-paniculata_contig157.3302.1|Name=mRNA_H-paniculata_contig157.3302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7862bp|location=Sequence derived from alignment at H-paniculata_contig157:17096..24957- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTAAGTTGTGTACGGGTGCACGAGGATGTCCAGTTTCTATGATCTCAC TGCGGGATCTGAAGGTTCAGACAACGATGATGATGATGATATTCTACAGG CTGCTATCAATGCATCTCTCTTGGACATGAACAACCAAAATTCAAGAACA GATGCCAGCAGCGCAGTTCAAAGTGAAGGAGGAAGCTCGTCCGGCTCGAA CTTTTCAGGAAATTCGCGGCAGAACAAAAGGCCACTGGATGCACAGCGAC ACGCAGCCTTGGAATCTCCCCAAGAGGTCAGCATTAGCAAACAGAGGAAG CGACCACGAAGTGTAGAAAGTGGTGAAGCCACCAATTCTGACAGCGTCGA AAAGGCGCCTCCTTTGTTCCGTCTTATCTCCACCCCGAGTGATGGTCCAG GATCAGGCAGTGTTGGTTTAAAAGATTTACTCAGCGGAGGCTTCACAGAA GCACTGTTAACCAACTACATGGTTGACATGGCACTGCTATTAGAGGCGCA GCCGAGGCTGGAGTATGTACCAGTTATTGTGGTGCACGGTTTCAAGCCAA ACACGTGAGTTGATCCAGTGCTTGATCGTGTATTGTGGGCACCTCCACCC AAAATGTGGGTAGTGAGCTAGCTTTTTTGGGTAAGGTATATGTTTGGTAT GGGCTTTCGGACAGTTGAGGGTACAATGTACATCTGATATGGATGAAAAA CTCTTTCAGGAACGCCCAAAATTACTTGTTTTCCCGCGTGGTCCACCCCT GTCCTTTACCTTCTACACTTGAACCGTTTTTTCGTGAAGGTTATTTCGGA ACAAATATGGCATGTGATGATAAATGTCTATAGCCCCCGAGTGTCAAAAC ACCAAGCACATGATCTACGATTATGTACAACGCACAACGGAAGTAAAAAT ACCGCCATACATGACAGCTGGAGCTAGCGTATGCACTGCAGCCGTTTTTA CGAGCACAACCGTACCAACCATCTCTTTGTGCGCAGTCTGTATTGGACTT TCTGTCTGAACAGTGGCAGTTCCCTACCCCGTAATCATGCCATAAGCGTT GTTTTCCCCTTGTTTCTGAGGCATGGGTTAGATCGCGATTAGACAGGAGT CGGCTCTAAAAGAGTTGAGAGTTAATCAGAGAAAAAATCGTCAAGAAGAA CGAAATCATGAGCTGACATTGCTCCCAAGTTGGAGACAGTCCATGGAAAG AGACAGTAGTGTATTTTCCTAGCCCACGATCCTGCTCATGTTGAGTCTCA TTTGACTGACATGGATGTGATGTTTTTGAACGTGTGCAATGCTTGAACTT GCATCGCAGGAGCGAGGGGAACGATCTACGAACACAATGCAACCGCATCA GTCAGGGCATCAAGCCTTATCACCCTGAGGTTGGTACAGTAGTAGAGGCG CTGCCAACAGAGGGAACATGACAAAGCTCCCCCTCTGACACACGTGGGTA ATACTCCACTCAAATTTATCGCTAGTACAAGCATACGTTCAAAACCATGT GAGCATGGCATTTTTTTTCAGTTTGGCTGCTCGTATTTTTTGTTCAACAT GCTCGCTATCGCTATCGACCATGCCGCTAGGTTGATATCATGCATTTACT TCAGGAAAATTAGACGAGAATTTCGTTGTATACATATAGGGTAATTTGTG CGTTCACTTTATTTCACACAGTAGTGCAGTGTTTTGGCTTCCGAGACGCA TGGCACTGCGTTTATTTGAGCTGCACAGCGAGCACGCTTTTCGTTGTACG CACGGAGTCATCGCCGTTAGCGCAACCATGTGACTTTCGAAGCAACAACA CGCTAGCGCTAAGATAAAGTAAGGTCTGATTCATTTAGACTCCCAAGTTA GCTTAACTTCGTGTTGTAAATATTACGTTCCCCTGATCCATTGAATGTTC CACTTTTAGATCTTGTACGACTTGAACGAGTGTACTTCCTCTGTGCCATG GACAAAGTCGGTTGAATTTGGTAGATCATATCTCCAGATCTAAAGCGTTT CAGAAGCCGTGGTTGGAATCGTTGGAAAGCTAAACTCTGATAGATTCATA TGCGCTATTCCACGATTCATTCGGGTCTGTGTGTCAGGATTAATGACCGC TGAGGGTCGGGCTAATTTTGATCATTTTGGTGGGGGGGGGGGGTTCAATT TTTTGCGTTTTTCTGTCGGAAAATTGGAAAAGAGACAAATTATGGTCTTT TTTCGGCTGATTTTTTTTTTGCGCCGCGCGTGGACCCGGTGGAGTTTTTG CTAATTTTTGTGGAATTTTGGGAATCAACCCCCAAAACATGTAGGATTCT ACCGAAAGAAAATAAAATATAATAGATGTTCAAGTGCTCCTGATAAAACG TTCGACGTTTCATATGGAACAGAGGAAATATACATGATATTTTTCGCACC TTCCTGGTACTTTTCATGCCCCTTTCCTCTTCCCTGGTTGCCTACCAGCT ACCGCAGTTCGGGACCCATCACGCGAAGATGATGGTGCTCAAGTTTCCTC GGGGCGTTCGAGTGGTTGTGTTGACGGCGAACTTTGTCGACCAAGATGTG ACAGGCAAGAGCCAGGGGGTGTGGTACCAGGAGTTCCCCTTGCGACAGTC TCCAACTTGTGACTTCGAGGTGCGGGAATTCTATGTAATAGGACTACGAG TACCATTTGAGTGGCGCCAGGTGGTGTGTGACAGTTTTGCGATAGTGGCT GGTTGAGAGATGATATGGAGGGATGTTTTCCCCCCTGGGCTGTTTAGGTT CAACCGCAACCCCTCGCGGCAGATCGGAAGAAGCTGAAGTTTTCGTTGAG CACCAGGTGTTACTAGCAAGTGCCAGCGCTTACCAACGCGAATTGTGTCA ATGATACTTTGGCTATCTTATATTATCCTTGTCCGTAGTACATTGCGGTG TACATAAGATATGCGTACGGGTTGCAACACTGTTCATAGATGACAGGTCT AAGACGTCAGGCTAAGGCGGTCAGCGAGCGCATTCTCTCGAGATTGTTTT TTGGCAGGGAAAAGCTTGACAAAACCACAGGTGGGTTTACAGTGGTTTGG CACCAACTGTATCGGATGCGCTTTCATGCACCTTGCTCTAGTCCCTCGTG ATTGGCAGCAATGGCGTTAGCTATACACTTGACGTGCCACCTTCGGTGAT TGAGGGAAGAAACGTTCAAGCCGCCGAGAGCGCCCCTCACCGTTTGTGAG GGTTTGCTGGTCGTTAAATTTTACGCATCCTGTCTCTGCCTCTATCTTTG TTATCCTGTCTAAAACGCAGTCTACCTTGGTGGACTACCTAGAAAAACTG GGAGGGCCTGTTACAGCCTTTGCAAGGTGTGAAGAAGGGCTGCTTGCGTT TTCTGGGGTTCATTTCTCCCACGGGTCGAGGTGGATCATTACCTCATTAC AGCAATGGACTTTAGGCAGCTCAAGCAAATTCCGCAGAGCTATCTAGTCT GCCACGTGCGATATTCGGGACATGGGATTGGACTCCTCGACAATATTTAT GCTCCATTTTAGTCTTGTCGTGTGCAGTAGGTCTTGTAATAGCTTACGCT ATTGCTGCGATATTCGAACAACGCAGTCATGAACAAATATGCTACTAGCA AAGACACATAAACAGGTCTTTGGCCATGCTCCAGTTTACCTTCCCAACAC CCACGCATGTAATTACCACAACACTCGACAATGTAGTCGACCATTCTTGT TTCTTGCATTTTCGGGTTTTGTCCGCTTTTACAGAAGTCTGAGGCAATAC GATTTCACCTCAGCTAGGGTAGCTTTGGTCCCGAGTGTACCCGGCACCAG GCCGAAGCACAAGGGTGCCGACCTGTACAAGTACGGTCACATGCGGGTGC GAGGACTGCTGGAGACGGAGCCGAGGTTGCTCAAGGATGAGCATCATCAC AAGGTTGCTTTTCAGTTCAGCAGTCTTGCGTCATTGACCAAAGACCCGGT GCGTTCAACCTCGCATCTTTTGCTGCGCGGTATCTCTGAGTAAGTAGCTT CGAAGTTGGAAGCTTCTGCAAGCCGAGCATCTGTGTACATCGTCCGGAGT GCGCCGTGATAATATCGGTGGGTATGTAGATGCAGGCAGCATATACCTCG GTGAGGCCTACCTGTTTTTTGTTCTTTTTTCTGCATGGCGCATCGGGACC TACCTTATGCATTTTGAATAACACCAGAAAGATTCGCTTCGTTGCCCTGT CTCTATAAATACTCATACCTGTGTTTCTATTTACTCACGATCCACCCTTG TGATGCCCTCCTGTGCTACGTGTTCTCTTGCTGCGGGGAGAAACATGACC AATGATTGCTCCGACGAAATACTCTATCTTGGTATTTTGTGTGTATAATA CCTTGAACCGTCAACCTTGTACATAATCCTGTGTAGAACCAGTGGCTGAT GGAGCTTTTGACGTCTTTCATGGCGCAAAAGGATGGCGAGCAACAGGATT GGAAGAAGCCTGAAGGTGGAGCAGGGTCAACGTCAACAGCGACAGCCACG AGGAACGTGCTGAAAGAACGTCTCAGACTAGTCTGGCCGACGATTGAAGC TATCCGCAACTCAAGCAAGGGGTGGGCAGCAGGCGGGTGAGCTCTTTATA CGTAGACATGTAACTTCTACCATTGTACATTTCGTGTCTGTCCGTCGGTT TCTCTTGTGTGTTTGTGCGTGTCTCAATCGATGGAACGAAAAGTGTGTAG GGCAGGTGATAAAATAGTGCTGACCAATTATGGAGTCCTCTCCCTACAGC TCTTTTGCTGGTGTAGTTGTATGAGCTGTGATTGCCCTAACTTGCACAAC ACAGTAGGGTCGTGATATCGTTCTTGTTTGCGGCTGAACCGCAGCGTCCA GCGTTCGACCATAGCGGGACTTTTCGTTTTGTCGATTGATTTCGTCAACA TGATTGCCCCTTCTCCCAGCATGTCACAGTGTTTTTGTACTGTTAGTGGT AAAGTAGCTCGTACATACTCTGGAGTATGAGTCGAACGGCTCGAATCCGA CACTCTATTCCCGTGCTTCGCGCTGCGCGAGTTCTCTCTACACCAAATTT CTCCGAAATTTCTGTGTATTTCTTGATTGAAGATACTTCAATTGTGCGCG AAGAATCCCGTGCGAGCCTTCCCTTCAATACTTCCCGGTTCACGTTGACC ACCATTGAACTTGAACGTTTACGTGGGATTTGCCCGTTCCAGGTCTATCC CGTGTCGAACAAACGACATGTTTGGAGGGGATTTTATCCGAGCCGACATG CGCAGGTTTGAGGCCAACGATCCCAGGCCCGAATTACGTCCCTTGTTGCG CAAGTGGCAGGGAAATCCGGCCGTGCACAGAACCTTCAACGCCCCGCACA TCAAGTCGTATGTGCGCTACCGGGAAACGTGCAAAGCTGGTGAGATTTCG GCAATATTGAATTTGAAAGGGCAGAAATTGGTTAGTTTGGTGGTATCTGT TTTTCGTTTTTGTCGATGCTGTCGTTGGTTGGATTGACTTCATGTTGTCG GCGGTGCGACTTGAAGACCGCGGCGGAGTTGTGAGAGAGCACGTGCTAAT ATACTGTGTTGCTTATATTGTCGTCGCTTGGTTGTTAAATCGCTCCATCG CCAGTTTTCTCGTTTACGTGTTTTGGGTGAGGGATTTTGGGGACTAAGAA TGTTTAATCTGCGACACAACATGCATGTATAACAAATTCGCATCGCGCCA CCAAATGGTTGGTCTTGCGTATGGCTTCGACGCTGTTCTTCAATAAGCGA ACGTTCGTTTTTTTTCAACATGGCGTCGATTACTGTTCCTGTAAACCACA GGCGGGGAACCTAGAGTAGACGGGGATGAAGTGGCTTGGTTCCTTCTCAG TAGTAGCAATCTCAGCCGCTCAGCTTGGGGGTTCCTCGACAAGGTGAACG GTTTTTATGTAGCTTGGTTTGTAACAGCGCTTGTCGGACGGTTCTTTTTG ATAAACCCATCTTGATAGTGTTGTTTAGCGCAAGGTTCAACACAGGCACT GACAATATTGCTTTATATACTTGAGTCGCCTGGCATCGATCGCCTCTGGG CGAAGACAATGTAACGCCGAGTTCGTGCATCAGCACACAAAACTAAAATC TTTGCTTCGTTCGAGAGCCTGATTCTCGCTTGTGGAACCAGTATCACGTT GGCGGTGCTGCTCCACACCCCCATGCACTGAAACATCGTTTTCGACACGA CACTCCCGCCGTGCAGACCTCTAAGCAATTGCTCGTGAGATCTTTCGAGA TGGGCATCATGTTTTTGCCCAGCCTCCTGGGCAAGGAGGACGACCGCCAA AGTGGCAGTAGTGGAGGCACAGGCACTGGCACTCATGATGCAGCAGCATT TACGTGCACGCCGGGGGAAATGGGCCTTATACAGCGGTTGCCACTCAGCT ACAGAATCCCGCCCGGAAAGGCTGTGCCGCTCCCATTGCTACCCATTCCG TACCTACTACCCGGTGAGCGCCCCGGGGACGGAGGTAGGGGAATCACTCA TGTGCTGTATGTTTCAGCCATTAGACCATTGCCCATGCGTGCTCGAGAGG ACAGAGCACGCTCAGAAAAGTACTAGTGATGGGCGGCCTGTGTCTAACTG TAATCGATAGTCGTGTGCGACGTTGTTCCTGTGCGAGTGATCGCCGATGG CCGATCGCTCCGTAATATTCTCCCAAAGGCGGTTAACAAAGAAATCGGTA ACCAAGGGAGGCATGGTGTGACGGGCACTGCAGTACTTGTAGGGCAGATT TTCACACTGGAAATTATTTTGTATTAAGTTGTATACGTGGATCTTGTTGT CCTTGTCCTTGGCGTGTACCTTGTCTGAGCCTATGGAGATAATTGGCATA AACGGAAGGCAAGTTCAGACATTGGTGTTATTGTATTACGTAGTATCATC GTACCACTCGGAGGTGTCGATATCATCGGGATGCAAACATTTTTCAAACG GGATTATTTCCTGAACGGAGATATCATGCGTTCGAAATAATCCGTCAATC GATCGATCTACGCAAGATCTTGTCAACGGCATACTGTTCCTTATCACTGG CACCGTAGCTCTCCAGATAATTGTGTCTTCAAAACGTTCGCACCCCGGTG AGATCGGTACCTACCTATGGGTTTTTCGGTCAATAAGAGTAGAAACTATC TGAGAACACAACACAAGCAGGTCGCGTCGAATGGTGCTGTTGGGCAGAAG CTCTCTCTCGCACAAGCACGCTTAAAAAAAGAAAACATGCCCACCAAAAA AGCAAACGGGATTTTGTCCCTGGAACCAAGGGCGAGAATCAAGCTGTGAA CCCACGAACTGTACGCAACGTGACCCTACTCATCTCTGTTGCCCTACTCC GCTCTGTTGCCCTGCTACCCTGTCCATCGTTATCAGCACCACGCTACAAC TTCGATGCAGGGGACAAGCCTTGGGTCTGGGATCAAAACTACGCAATACC AGACAAATTCGGAAAAATGTGGACGGGTGGTAAAAATTGAGTTCGAGCTT GGTCGAATGACTGCTGGTGTAGCCACAACAAAAATGGATGCCACCGAAGC AATCAAAGAAACGGGTATCTGTAGCAGTGGACGGGGCGCCACCCTCAAAT GGGGAGCACGAGGGACTAGATGCTGCGATGCTGCTTGAGTCACTACACTG CATGGTTGAGAGTGAAATATAGCAGCACAAAAGTTCCATAGTTGGAGTTA TGGTTCGTGCAGCAAAATCCTTGGCTCCTTGCCAGGGTGTCCAAGAGTGC ACACTACGTGAGGCCGACTCTTTATGAGAGAATGAACTCTTTCCCAGGAA AATCGATTCTGACTGAATTTCGTGCAAAAATAGCTGCATTACTGAAACTA GATACACGCGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig157:17096..24957-

>mRNA_H-paniculata_contig157.3302.1 ID=mRNA_H-paniculata_contig157.3302.1|Name=mRNA_H-paniculata_contig157.3302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3756bp|location=Sequence derived from alignment at H-paniculata_contig157:17096..24957- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAGTTTCTATGATCTCACTGCGGGATCTGAAGGTTCAGACAACGA
TGATGATGATGATATTCTACAGGCTGCTATCAATGCATCTCTCTTGGACA
TGAACAACCAAAATTCAAGAACAGATGCCAGCAGCGCAGTTCAAAGTGAA
GGAGGAAGCTCGTCCGGCTCGAACTTTTCAGGAAATTCGCGGCAGAACAA
AAGGCCACTGGATGCACAGCGACACGCAGCCTTGGAATCTCCCCAAGAGG
TCAGCATTAGCAAACAGAGGAAGCGACCACGAAGTGTAGAAAGTGGTGAA
GCCACCAATTCTGACAGCGTCGAAAAGGCGCCTCCTTTGTTCCGTCTTAT
CTCCACCCCGAGTGATGGTCCAGGATCAGGCAGTGTTGGTTTAAAAGATT
TACTCAGCGGAGGCTTCACAGAAGCACTGTTAACCAACTACATGGTTGAC
ATGGCACTGCTATTAGAGGCGCAGCCGAGGCTGGAGTATGTACCAGTTAT
TGTGGTGCACGGTTTCAAGCCAAACACATGTCCAGTTTCTATGATCTCAC
TGCGGGATCTGAAGGTTCAGACAACGATGATGATGATGATATTCTACAGG
CTGCTATCAATGCATCTCTCTTGGACATGAACAACCAAAATTCAAGAACA
GATGCCAGCAGCGCAGTTCAAAGTGAAGGAGGAAGCTCGTCCGGCTCGAA
CTTTTCAGGAAATTCGCGGCAGAACAAAAGGCCACTGGATGCACAGCGAC
ACGCAGCCTTGGAATCTCCCCAAGAGGTCAGCATTAGCAAACAGAGGAAG
CGACCACGAAGTGTAGAAAGTGGTGAAGCCACCAATTCTGACAGCGTCGA
AAAGGCGCCTCCTTTGTTCCGTCTTATCTCCACCCCGAGTGATGGTCCAG
GATCAGGCAGTGTTGGTTTAAAAGATTTACTCAGCGGAGGCTTCACAGAA
GCACTGTTAACCAACTACATGGTTGACATGGCACTGCTATTAGAGGCGCA
GCCGAGGCTGGAGTATGTACCAGTTATTGTGGTGCACGGTTTCAAGCCAA
ACACGAGCGAGGGGAACGATCTACGAACACAATGCAACCGCATCAGTCAG
GGCATCAAGCCTTATCACCCTGAGGAGCGAGGGGAACGATCTACGAACAC
AATGCAACCGCATCAGTCAGGGCATCAAGCCTTATCACCCTGAGCTACCG
CAGTTCGGGACCCATCACGCGAAGATGATGGTGCTCAAGTTTCCTCGGGG
CGTTCGAGTGGTTGTGTTGACGGCGAACTTTGTCGACCAAGATGTGACAG
GCAAGAGCCAGGGGGTGTGGTACCAGGAGTTCCCCTTGCGACAGTCTCCA
ACTTGTGACTTCGAGCTACCGCAGTTCGGGACCCATCACGCGAAGATGAT
GGTGCTCAAGTTTCCTCGGGGCGTTCGAGTGGTTGTGTTGACGGCGAACT
TTGTCGACCAAGATGTGACAGGCAAGAGCCAGGGGGTGTGGTACCAGGAG
TTCCCCTTGCGACAGTCTCCAACTTGTGACTTCGAGTCTACCTTGGTGGA
CTACCTAGAAAAACTGGGAGGGCCTGTTACAGCCTTTGCAAGTCTACCTT
GGTGGACTACCTAGAAAAACTGGGAGGGCCTGTTACAGCCTTTGCAAGAA
GTCTGAGGCAATACGATTTCACCTCAGCTAGGGTAGCTTTGGTCCCGAGT
GTACCCGGCACCAGGCCGAAGCACAAGGGTGCCGACCTGTACAAGTACGG
TCACATGCGGGTGCGAGGACTGCTGGAGACGGAGCCGAGGTTGCTCAAGG
ATGAGCATCATCACAAGGTTGCTTTTCAGTTCAGCAGTCTTGCGTCATTG
ACCAAAGACCCGAAGTCTGAGGCAATACGATTTCACCTCAGCTAGGGTAG
CTTTGGTCCCGAGTGTACCCGGCACCAGGCCGAAGCACAAGGGTGCCGAC
CTGTACAAGTACGGTCACATGCGGGTGCGAGGACTGCTGGAGACGGAGCC
GAGGTTGCTCAAGGATGAGCATCATCACAAGGTTGCTTTTCAGTTCAGCA
GTCTTGCGTCATTGACCAAAGACCCGAACCAGTGGCTGATGGAGCTTTTG
ACGTCTTTCATGGCGCAAAAGGATGGCGAGCAACAGGATTGGAAGAAGCC
TGAAGGTGGAGCAGGGTCAACGTCAACAGCGACAGCCACGAGGAACGTGC
TGAAAGAACGTCTCAGACTAGTCTGGCCGACGATTGAAGCTATCCGCAAC
TCAAGCAAGGGGTGGGCAGCAGGCGGAACCAGTGGCTGATGGAGCTTTTG
ACGTCTTTCATGGCGCAAAAGGATGGCGAGCAACAGGATTGGAAGAAGCC
TGAAGGTGGAGCAGGGTCAACGTCAACAGCGACAGCCACGAGGAACGTGC
TGAAAGAACGTCTCAGACTAGTCTGGCCGACGATTGAAGCTATCCGCAAC
TCAAGCAAGGGGTGGGCAGCAGGCGGGTCTATCCCGTGTCGAACAAACGA
CATGTTTGGAGGGGATTTTATCCGAGCCGACATGCGCAGGTTTGAGGCCA
ACGATCCCAGGCCCGAATTACGTCCCTTGTTGCGCAAGTGGCAGGGAAAT
CCGGCCGTGCACAGAACCTTCAACGCCCCGCACATCAAGTCGTATGTGCG
CTACCGGGAAACGTGCAAAGCTGGTCTATCCCGTGTCGAACAAACGACAT
GTTTGGAGGGGATTTTATCCGAGCCGACATGCGCAGGTTTGAGGCCAACG
ATCCCAGGCCCGAATTACGTCCCTTGTTGCGCAAGTGGCAGGGAAATCCG
GCCGTGCACAGAACCTTCAACGCCCCGCACATCAAGTCGTATGTGCGCTA
CCGGGAAACGTGCAAAGCTGGCGGGGAACCTAGAGTAGACGGGGATGAAG
TGGCTTGGTTCCTTCTCAGTAGTAGCAATCTCAGCCGCTCAGCTTGGGGG
TTCCTCGACAAGGCGGGGAACCTAGAGTAGACGGGGATGAAGTGGCTTGG
TTCCTTCTCAGTAGTAGCAATCTCAGCCGCTCAGCTTGGGGGTTCCTCGA
CAAGACCTCTAAGCAATTGCTCGTGAGATCTTTCGAGATGGGCATCATGT
TTTTGCCCAGCCTCCTGGGCAAGGAGGACGACCGCCAAAGTGGCAGTAGT
GGAGGCACAGGCACTGGCACTCATGATGCAGCAGCATTTACGTGCACGCC
GGGGGAAATGGGCCTTATACAGCGGTTGCCACTCAGCTACAGAATCCCGC
CCGGAAAGGCTGTGCCGCTCCCATTGCTACCCATTCCGTACCTACTACCC
GACCTCTAAGCAATTGCTCGTGAGATCTTTCGAGATGGGCATCATGTTTT
TGCCCAGCCTCCTGGGCAAGGAGGACGACCGCCAAAGTGGCAGTAGTGGA
GGCACAGGCACTGGCACTCATGATGCAGCAGCATTTACGTGCACGCCGGG
GGAAATGGGCCTTATACAGCGGTTGCCACTCAGCTACAGAATCCCGCCCG
GAAAGGCTGTGCCGCTCCCATTGCTACCCATTCCGTACCTACTACCCGCA
CCACGCTACAACTTCGATGCAGGGGACAAGCCTTGGGTCTGGGATCAAAA
CTACGCAATACCAGACAAATTCGGAAAAATGTGGACGGGTGGTAAAAATT
GACACCACGCTACAACTTCGATGCAGGGGACAAGCCTTGGGTCTGGGATC
AAAACTACGCAATACCAGACAAATTCGGAAAAATGTGGACGGGTGGTAAA
AATTGA
back to top