mRNA_H-paniculata_contig157.3301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig157.3301.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI) HSP 1 Score: 942 bits (2436), Expect = 1.390e-292 Identity = 572/1140 (50.18%), Postives = 701/1140 (61.49%), Query Frame = 3
Query: 30 GGVGGV-VGTKGVEEKQMWCEFNDTIVKEWEVNGRRDGPDGG-------GTRIGGLEIDCFGGQQTMQELDEYGWPRTLRKDNIQNAYLLFYERVDQAAQPTNDAAHDEDKVTGSDVD-DARRSGHEAAA---------------SPSAA----AAVPPAVFRAVWDDNNKFLLDRQLYHPDLSKFVLEVLKSVREVEQAARRRCIGSKPLLPAAAEATPLGGETQYLPPPPTREESEGIVESSKALPLSPPAALEEGLAEGFLEWGVRYALENLARAQDNGVFPRVVEQLQGLYDLCPSKAGAFLDAEVQGGMQGMREMLLQCNDHPVRVAMRGFYLHLVAILAEEEGDEYLDYEQNPPSG--VGSGAISDETV------------AGTVFGPSNAAGVTDMVA--------------------MEPLQQRASARLSRVVDGWLTLLPDAARSWGRLEQFLELIEGVGYMGDRERDLLVNRRMVCRLCDFFLQEKSPVHDSKNRLPRMGHKTAPPRFSPLVRCVKTLRAHCGERARSPPRVTAAVEARGGQQQVSIESETDTASDSEGSRSDDSVSSMRAVVSMPNGPAVSFSDPRKE---------------------RHESQVTNAVSASANAPSTTDGDGNEGVGTGAEERVVQGEKEGRSRSVVLSLGCRRCLSCELLYDLAFEEDHAPEAAAELMCNWAVGSSKLVRPLSGMLLAGIESSSYTDVDTWMGAIRRWLEVEDTLQAERLMLVLGAEKPEADAKLLMFMSTQNHDKFHKWLYKVLLVMSELMAENMAVGTYISQIRSAEIMPWSDWMTKHVNDVY---GTARG-VGSATVKPEEIVQMKENLRAYDEKYFGRTAEDRLGDLARRGKIGPAEGELGVTRVESFTSNGVQVEMLDLSHVDSVMESGFEGGPSATIGAIASPWRRFWRVTNHRMDNVSFVFHITPT-SRVDSYYGFDRPNYHIPSPAPEMKFMLKPSETRQILCVDKQDPSREFSPWPFNWKFEVAQPEEEITQ----------------------VP-------MTAADILLHQQAQLQGEAGEAVRVVLAMEKXXXXXXXXXXXXXXXXXXXXXXXXAVAQAAASLPSVPFEVVSKVASEKKVDNADG 3098
GGVGG V KG + WCEFNDT+VKEW V GRR G +GG G RIGGL DCFGGQQTMQE DEYGWPRTLRKDNIQNAYLLFYERVDQ+ D A E++ G + D G E AA S SAA AAVPP+VFR VWDDNNKFLLDRQLYHPD+S FVL+++K+VR++ A+ P TP G LP + PLS A++ L EGFLEWGVRY L+NLARA DN F +VE+LQGLYDL P AGAFLDAE +GGMQGMREMLL C D VRVAMRGFYLHL+ ILA EGD YLDY+ PP+ + ++D++V AGT ++G + ME + R+S RL RVV GW++LLPDAARSWGR EQFLE+IEGVG MGDRERDLL+NR+MVCRL FFLQEKSP++D RLPRMGHKTAPPRFSPLVRC+++LRAH GE +R PR + V +ES+TDT SDSEGSRSDDS MRAV SMP GP +F D + R +VT+ +SA A +G E VG KE RSRSV LS GCRRCL+CE LYDLAFEE HAPEAAAELMC WA +SKL+RPLS +++ G++S+ + DVD+W+ A+R WLEV+DTL+ ER +VLG K E + KLL+ M Q +K+ KWL++VL+V+SELMAEN +G ++S++RS E++PW+DWMTKH+ D Y G+A G VG VK +++Q+KENL AY++ YFG TAE+RL D+ RR +IGPAEGE GVTRVES TSNGVQVEMLD + +M GG G P +RFWRVTNHRMD+V+F F I PT SR+D+ Y RPNYH+P+ ++ +LKP ET I+ VDK D +REF P PFNW FE T+ VP +TA+D LL +QAQL+G+ GEA RV L +E+ XX AVA A+SLP +P+EVVSKV ++ +++G
Sbjct: 2812 GGVGGADVDGKGPPQ---WCEFNDTMVKEWAVAGRRAGSEGGERGKEDGGGRIGGLSTDCFGGQQTMQETDEYGWPRTLRKDNIQNAYLLFYERVDQSYGAGADTASPEEEGEGGSGERDPGNHGEEVAAPXXXXXXXXTGVGGVSTSAAEMEAAAVPPSVFRQVWDDNNKFLLDRQLYHPDMSNFVLDIIKAVRQLASASPATTGDRTKPSPGCLADTPAGALEAKLP--------------REVPPLSDGVAVD--LVEGFLEWGVRYLLDNLARALDNDAFAPLVEELQGLYDLRPEAAGAFLDAETEGGMQGMREMLLLCPDRSVRVAMRGFYLHLLGILAGAEGDRYLDYDDPPPTQQQLDPSLLADQSVTEGXXXXATAAIAGTPTATPTSSGTASALEEGTENALWPAAGDQVQLQEEMEEERGRSSTRLGRVVAGWVSLLPDAARSWGRFEQFLEVIEGVGNMGDRERDLLLNRQMVCRLGSFFLQEKSPMYDPHKRLPRMGHKTAPPRFSPLVRCLRSLRAHSGETSRWQPRGS-----------VQVESDTDTVSDSEGSRSDDS---MRAVKSMPVGPVAAFPDSGADAINEEGGPLPLSLTTSLAPMDRETLEVTSGSPSSAAA--AEEGGDAEVVGVAGVRGSRMTAKE-RSRSVALSPGCRRCLNCETLYDLAFEEHHAPEAAAELMCAWAADASKLLRPLSRLIVQGVDSTPFADVDSWLLALRAWLEVDDTLKVERYQMVLGTGKQEVEPKLLLLMMLQQ-EKYDKWLFRVLMVVSELMAENAGIGAHVSKLRSHEMLPWADWMTKHLMDTYDAYGSALGGVGPLRVKEMDLIQIKENLSAYEKAYFGHTAEERLVDMTRRARIGPAEGEPGVTRVESSTSNGVQVEMLDATDTAMMMLGAGGGGHMTMAGGF--PLKRFWRVTNHRMDSVTFTFKIEPTPSRLDTVYPSRRPNYHVPA-GRDVTLLLKPRETAGIMEVDKLDLTREFQPHPFNWVFEALPETPTATEGAATAPXXXXXXXXXXXXXGEAVPTTVLPTALTASD-LLEKQAQLEGDLGEAARVALKLEQEEAAEAQAAAIXXAKRAEEHELSQAVAATASSLPVIPYEVVSKVKADGISSSSEG 3910
BLAST of mRNA_H-paniculata_contig157.3301.1 vs. uniprot
Match: A0A7S3YIR8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIR8_HETAK) HSP 1 Score: 79.0 bits (193), Expect = 1.030e-13 Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 3
Query: 1131 QQRASARLSRVVDGWLTLLPDAARSWGRLEQFLELIEGVGYMGDRERDLLVNRRMVCRLCDFFLQEKSPVHDSKNRLPRMGHKTAPPRFSPLVR 1412
++R + +R +DG L LLP AA+ W R+EQF ++ E + +G R++++ RR++ L DFFL++KSP + MG+K PR PLVR
Sbjct: 8 RRRPATATARFLDGLLALLPGAAKEWARIEQFAQVFEVMANLGPEAREMMLARRVLAHLLDFFLRDKSPFVREGEKRTAMGNKMYSPRLGPLVR 101
BLAST of mRNA_H-paniculata_contig157.3301.1 vs. uniprot
Match: A0A1R2D0P5_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D0P5_9CILI) HSP 1 Score: 63.2 bits (152), Expect = 6.680e-6 Identity = 67/316 (21.20%), Postives = 117/316 (37.03%), Query Frame = 3
Query: 69 EKQMWCEFNDTIVKEWEVNGRRDGPDGGGTRIGGLEIDCFGGQQTMQELDEYGWPRTLRKDNIQNAYLLFYERV---DQAAQPTNDAAHDEDKVTGSDVDDARRSGHEAAASPSAAAAVPPAVFRAVWDDNNKFLLDRQLYHPDLSKFVLEVLKSVREVEQAARRRCIGSKPLLPAAAEATPLGGETQYLPPPPTREESEGIVESSKALPLSPPAALEEGLAEGFLEWGVRYALENLARAQDNGVFPRVVEQLQGLYDLCPSKAGAFLDAEVQGGMQGMREMLLQCNDHPVRVAMRGFYLHLVAILAEEEGDEYLD 1007
E W EFND+ VK + TRI E +CFGG DE W ++ KDN +NAY+L YE+ D Q + + D + R+ +P +V++AV DN+K+LL + +Y+ D F+L+ + + E + V+ S + ++ E L R+ N + P V+ L+ ++++ P F+ ++ + + +LL C + R AM F+ + + +E + E D
Sbjct: 1958 EPNKWFEFNDSAVKSFNP-----------TRI---EAECFGGVSD----DESNWMKSY-KDNSRNAYMLVYEKKLKHDLKLQVLEGDSTTSPRTITRDFNSYNRT-------------IPASVYQAVLADNDKYLLQKNIYNMDFFSFILDTINASLEAK------------------------------------------VDISMTV--------------------LQIVFEVLCRSFHNKILPDVLSALKKVFNMFPDNFEKFIRNHLEDSLSNVLMLLLVCTEKITRDAMADFFTYCLIKQSEVDFGENSD 2179 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig157.3301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig157.3301.1 >prot_H-paniculata_contig157.3301.1 ID=prot_H-paniculata_contig157.3301.1|Name=mRNA_H-paniculata_contig157.3301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1195bp MWCEFNDTIVKEWEVNGRRDGPDGGGTRIGGLEIDCFGGQQTMQELDEYGback to top mRNA from alignment at H-paniculata_contig157:1024..16295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig157.3301.1 ID=mRNA_H-paniculata_contig157.3301.1|Name=mRNA_H-paniculata_contig157.3301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15272bp|location=Sequence derived from alignment at H-paniculata_contig157:1024..16295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig157:1024..16295+ >mRNA_H-paniculata_contig157.3301.1 ID=mRNA_H-paniculata_contig157.3301.1|Name=mRNA_H-paniculata_contig157.3301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7170bp|location=Sequence derived from alignment at H-paniculata_contig157:1024..16295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |