mRNA_H-paniculata_contig15689.3297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15689.3297.1
Unique NamemRNA_H-paniculata_contig15689.3297.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: D7FYV7_ECTSI (Anaphase-promoting complex subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.100e-44
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:   10 QQDGESTVPKTETSELDYVTRREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            QQ  +    KTE SELDYVTRREIGR+AVWSLSSAKPGNGVDQLRDDST+TYWQSDGGQPHLINIQFHKKMTVVE+AF+LDF+ DE+
Sbjct:    9 QQPAQPPEAKTEASELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDES 95
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A2D4CC72_PYTIN (Anaphase-promoting complex subunit 10 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC72_PYTIN)

HSP 1 Score: 116 bits (290), Expect = 4.240e-31
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   43 ETSELDYVTRREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            ++S  +   RRE+G DAVWSLSSAKPGNGVDQLRD++ +TYWQSDG QPHLINIQF KKM V EVA YLDF LDE+
Sbjct:    5 QSSPREEARRREVGDDAVWSLSSAKPGNGVDQLRDNNVDTYWQSDGTQPHLINIQFFKKMAVQEVALYLDFKLDES 80
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: F0XYN0_AURAN (Anaphase-promoting complex subunit 10 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYN0_AURAN)

HSP 1 Score: 116 bits (291), Expect = 5.580e-31
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:   37 KTETSELDYV-TRREIGRDAVWSLSSAKPGNGVDQLR--------DDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            +T TSELD     REIG +AVWSLS+AKPGNGV+Q+R        D++TETYWQSDGGQPHLINIQFHKKM++ E+AFYLD+ LDE+
Sbjct:    8 RTGTSELDVSPANREIGDEAVWSLSTAKPGNGVEQIRAAPGGKRRDENTETYWQSDGGQPHLINIQFHKKMSISEMAFYLDYGLDES 94
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A2D4CD66_PYTIN (Anaphase-promoting complex subunit 10, variant 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD66_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 1.150e-30
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    7 HQQDGESTVPKTETSELDYVTRREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            H QD        ++S  +   RRE+G DAVWSLSSAKPGNGVDQLRD++ +TYWQSDG QPHLINIQF KKM V EVA YLDF LDE+
Sbjct:  146 HDQDYALAFVLQQSSPREEARRREVGDDAVWSLSSAKPGNGVDQLRDNNVDTYWQSDGTQPHLINIQFFKKMAVQEVALYLDFKLDES 233
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: K3WX17_GLOUD (Anaphase-promoting complex subunit 10 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX17_GLOUD)

HSP 1 Score: 115 bits (287), Expect = 1.310e-30
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   70 RREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            RRE+G DAVWSLS+AKPGNGVDQLRD++ +TYWQSDG QPHLIN+QFHKKM + E+A YLD+ LDE+
Sbjct:    7 RREVGDDAVWSLSTAKPGNGVDQLRDNNVDTYWQSDGSQPHLINVQFHKKMALKEIALYLDYKLDES 73
[Close]
BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A2P4Y477_9STRA (Anaphase-promoting complex subunit 10, variant 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y477_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.690e-30
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:   70 RREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            RRE+G DAVWSLSSAKPGNGVDQLRD++ +TYWQSDG QPHLINIQF +KM V EVA YLD+ LDE+
Sbjct:   10 RREVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGVQPHLINIQFSRKMAVKEVALYLDYKLDES 76
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A8K1FCQ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCQ9_PYTOL)

HSP 1 Score: 114 bits (286), Expect = 1.760e-30
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:   70 RREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            RREIG DAVWSLSSAKPGNGVDQLRD++ +TYWQSDG QPHLINIQF KKMT+ E+A YLD  LDE+
Sbjct:    5 RREIGDDAVWSLSSAKPGNGVDQLRDNNVDTYWQSDGSQPHLINIQFFKKMTISEIALYLDHKLDES 71
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BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A7S0I3I7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I3I7_9CRYP)

HSP 1 Score: 112 bits (280), Expect = 1.880e-30
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:   13 QDGESTVPKTETSELDYVTRREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            QD      K   + LD   + EIG DAVW+LS+AKPGNGV+QLRD+ST++YWQSDG QPHL+NIQFHKK+++ E+A Y DF LDE+
Sbjct:   12 QDETDIESKKLPTHLDDKDKNEIGGDAVWTLSTAKPGNGVEQLRDNSTDSYWQSDGPQPHLVNIQFHKKVSIKEIALYCDFKLDES 97
[Close]
BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A485KIW7_9STRA (Anaphase-promoting complex subunit 10 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIW7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.700e-30
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   64 VTRREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            + +REIG +AVW+LSSAKPGNGV QLRDD+ +TYWQSDG QPHLINIQFHKKMT+ EVA YLD+ LDE+
Sbjct:    1 MRKREIGDEAVWTLSSAKPGNGVHQLRDDNMDTYWQSDGPQPHLINIQFHKKMTIREVALYLDYKLDES 69
[Close]
BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Match: A0A067CDF0_SAPPC (Anaphase-promoting complex subunit 10 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDF0_SAPPC)

HSP 1 Score: 113 bits (282), Expect = 7.690e-30
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   64 VTRREIGRDAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA 270
            + +REIG +AVW+LS+AKPGNGV QLRDD+ +TYWQSDG QPHLINIQFHKKMTV EVA YLD+ LDE+
Sbjct:    1 MEKREIGDEAVWTLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDES 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15689.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV7_ECTSI2.100e-4482.76Anaphase-promoting complex subunit 10 n=2 Tax=Ecto... [more]
A0A2D4CC72_PYTIN4.240e-3172.37Anaphase-promoting complex subunit 10 n=1 Tax=Pyth... [more]
F0XYN0_AURAN5.580e-3166.67Anaphase-promoting complex subunit 10 n=1 Tax=Aure... [more]
A0A2D4CD66_PYTIN1.150e-3065.91Anaphase-promoting complex subunit 10, variant 2 n... [more]
K3WX17_GLOUD1.310e-3074.63Anaphase-promoting complex subunit 10 n=1 Tax=Glob... [more]
A0A2P4Y477_9STRA1.690e-3077.61Anaphase-promoting complex subunit 10, variant 1 (... [more]
A0A8K1FCQ9_PYTOL1.760e-3079.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0I3I7_9CRYP1.880e-3060.47Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A485KIW7_9STRA2.700e-3075.36Anaphase-promoting complex subunit 10 n=1 Tax=Apha... [more]
A0A067CDF0_SAPPC7.690e-3075.36Anaphase-promoting complex subunit 10 n=2 Tax=Sapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15689contigH-paniculata_contig15689:2957..4414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue7.1e-35
Seed eggNOG ortholog2880.D7FYV7
Preferred nameANAPC10
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K03357,ko:K11788
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00230,map01100,map01110,map01130,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00048,M00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005739,GO:0005829,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007113,GO:0008150,GO:0008152,GO:0008156,GO:0008283,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010087,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0016043,GO:0016567,GO:0016604,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031145,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0036211,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045786,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070979,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090329,GO:0098772,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234,GO:2000104,GO:2000112,GO:2000113,GO:2000736
EggNOG free text desc.anaphase-promoting complex-dependent catabolic process
EggNOG OGsCOG5156@1,KOG3437@2759
EC6.3.3.1,6.3.4.13
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.6366515-CDS-H-paniculata_contig15689:2957..30521622929251.6366515-CDS-H-paniculata_contig15689:2957..3052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 2958..3052 -
1691480787.8111293-CDS-H-paniculata_contig15689:2957..30521691480787.8111293-CDS-H-paniculata_contig15689:2957..3052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 2958..3052 -
1622929251.6503673-CDS-H-paniculata_contig15689:4239..44141622929251.6503673-CDS-H-paniculata_contig15689:4239..4414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 4240..4414 -
1691480787.823272-CDS-H-paniculata_contig15689:4239..44141691480787.823272-CDS-H-paniculata_contig15689:4239..4414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 4240..4414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15689.3297.1prot_H-paniculata_contig15689.3297.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15689 2958..4414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15689.3297.1

>prot_H-paniculata_contig15689.3297.1 ID=prot_H-paniculata_contig15689.3297.1|Name=mRNA_H-paniculata_contig15689.3297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
QQHQQDGESTVPKTETSELDYVTRREIGRDAVWSLSSAKPGNGVDQLRDD
STETYWQSDGGQPHLINIQFHKKMTVVEVAFYLDFNLDEA
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mRNA from alignment at H-paniculata_contig15689:2957..4414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15689.3297.1 ID=mRNA_H-paniculata_contig15689.3297.1|Name=mRNA_H-paniculata_contig15689.3297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig15689:2957..4414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAACACCAGCAAGATGGAGAAAGCACGGTGCCCAAGACGGAGACTAG
CGAGCTGGACTATGTCACTAGAAGGGAGATAGGGAGGGACGCGGTCTGGT
CACTGTCTTCAGCCAAGCCAGGAAACGGGGTGGATCAATTGAGAGATGAT
AGCACGGAGACCTATTGGCAGTCAGGTACTCTACTCAACTCTACTCGACT
CCACTCGACTCCACTTCACTCGACTAGTTGTATCATGCTGTGTGATTCTG
GCTCAATATCTTGGCTTGGATGGGCGACTTGAAAGTAAGATTTTGGGCTC
TATATCATGTTGCTGTGACACAGAGTCCACAAAAGGAATTCCTTTTCTTA
ATTTCGATTTGATTGTATGATGCTTACAGTGAGCCCTACGTCCTAGACCC
CAGTTAACCTACACCAACGTCTTGCTATAAAATTATGGTATGAGGTGTAA
GCTCTACGTCCCGGACCCCAGTTAACCTATGTGAAGGGGAGCCATGCCAT
TCCTTTTGTAGCGAGACGTTGGTGTAGGTTAACTGGGGTCCTGGACGTAG
AGCTCACTGTAAGCCACATACAACCAAATCGTAATTTTGAACAGGAATTC
TGCATGAAGGCTGATTTTGTATCAAAAATGTTGCCTTGGATGTAAACATG
TGCACACAACGAGAATGGCCGTGTAAAGATCCATCCGATGGATAGGTTTG
TGGATTAACTTCCATCAATGGCACTCAACGGCACTGTACACAGAGACAGT
GTTCCTTCTCAAACGCTTTCGGGGAAAGTAATATTCTCATAGTACATATA
TATACCACGTGATAATAGAATGCGAGAACCGAGGCATTAATTCCCAATTT
CGGACCGGGGGTTCTGATCTCGAGGGGGAAAAAGCAATAGAAATTGAATA
CAGCAGACAGGTGGCAATCGAAATACAGGGGTTAACCCAAGCAGGCCCTG
TCCTCGACAGCGTGCTGACTATACATGCGCGGTAATGGGGCTGCTCCTGT
CTCCACCCTGGCACACTGTTGTTAATTTTAAAAAGTGTAGACCTAATGTT
CTCGTGGTGGCTCCTTGGTCGATGGGGGAGTGGTTCTACAAGTTGCGATG
CTTAGCTAAATTTACCACATTTTTGTTCCCATTTAGTGGCACGCACGCGT
TCTCTAATAATTAAATTTATGTTGATCTGTATTTTAATGAGTTCATGCCA
TTAATCGATCGGATGATCATGGTAGATTATCCTCCCCATTTTTCCGTGTG
CTCTTTTTGGATACTTCCGCTTCCCCGCTACAGCATGATGATACGTTTGT
TTTTTTTGCTTCGCTGACCGTAAGAATAACCTCGTGTCTCGCTGTCGATC
GGGAGAGTGCAGATGGGGGACAGCCGCACCTCATTAACATCCAGTTCCAC
AAGAAGATGACGGTGGTGGAGGTCGCCTTCTACCTTGACTTTAACCTGGA
CGAGGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15689:2957..4414-

>mRNA_H-paniculata_contig15689.3297.1 ID=mRNA_H-paniculata_contig15689.3297.1|Name=mRNA_H-paniculata_contig15689.3297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig15689:2957..4414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAACACCAGCAAGATGGAGAAAGCACGGTGCCCAAGACGGAGACTAG
CGAGCTGGACTATGTCACTAGAAGGGAGATAGGGAGGGACGCGGTCTGGT
CACTGTCTTCAGCCAAGCCAGGAAACGGGGTGGATCAATTGAGAGATGAT
AGCACGGAGACCTATTGGCAGTCAGCAGCAACACCAGCAAGATGGAGAAA
GCACGGTGCCCAAGACGGAGACTAGCGAGCTGGACTATGTCACTAGAAGG
GAGATAGGGAGGGACGCGGTCTGGTCACTGTCTTCAGCCAAGCCAGGAAA
CGGGGTGGATCAATTGAGAGATGATAGCACGGAGACCTATTGGCAGTCAG
ATGGGGGACAGCCGCACCTCATTAACATCCAGTTCCACAAGAAGATGACG
GTGGTGGAGGTCGCCTTCTACCTTGACTTTAACCTGGACGAGGCAATGGG
GGACAGCCGCACCTCATTAACATCCAGTTCCACAAGAAGATGACGGTGGT
GGAGGTCGCCTTCTACCTTGACTTTAACCTGGACGAGGCA
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