mRNA_H-paniculata_contig15689.3296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15689.3296.1
Unique NamemRNA_H-paniculata_contig15689.3296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: D7FYV7_ECTSI (Anaphase-promoting complex subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV7_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.470e-35
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTPKK+S+RAGSSFHDLVEVT+KEL+ PVGWVRVPL   G           AA GAEGP LRAHF+QICVVAMHQNGRDTHIRQV+
Sbjct:   95 SYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAAAIAAD-AAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVK 180
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: F0XYN0_AURAN (Anaphase-promoting complex subunit 10 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYN0_AURAN)

HSP 1 Score: 92.4 bits (228), Expect = 1.510e-21
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTPKK+S+RAG++FHDLVEV + +L+ P GWV V L+                   +G ALRA F+Q+CVV+MHQNGRDTH+RQ +
Sbjct:   94 SYTPKKMSIRAGTTFHDLVEVEVVDLHEPTGWVTVALSHG-----------------DGKALRAFFLQVCVVSMHQNGRDTHVRQAK 163
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: W7U0V1_9STRA (Anaphase-promoting complex, subunit 10/DOC domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.660e-19
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLA--VSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTPKKIS++AG++FHDLVE+    L  P GWV+VP+    +             A    G  LRA F+QI ++AMHQNGRDTH+RQV+
Sbjct:   89 SYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVK 177
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: A0A1W0A3Z8_9STRA (Anaphase-promoting complex subunit 10 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3Z8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.890e-19
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP+KIS+RAGS+FHDLVE+  + +  P+GW+ + L               A AG+E P LR  F+QI V+ MHQNGRDTHIRQV+
Sbjct:   69 SYTPRKISIRAGSTFHDLVEIKTQTIVEPMGWITIQLM--------QPPSHIANAGSEKP-LRTFFLQIAVMGMHQNGRDTHIRQVK 146
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: A0A0M0J4G7_9EUKA (Anaphase-promoting complex subunit 10-like protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J4G7_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 5.640e-19
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRV-PLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP KIS+R G++FHDL E+ ++ELN P GWV + P +V+                    ALRAHFIQ+ V+A HQNGRDTHIRQ++
Sbjct:   93 SYTPSKISIRVGNTFHDLQEIHVQELNEPSGWVTILPTSVTSRGDDPDA------------ALRAHFIQVAVLANHQNGRDTHIRQIK 168
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: C1E9N2_MICCC (Anaphase-promoting complex subunit 10 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9N2_MICCC)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-18
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP KISVRAG+SFHDL E+   +L+ P GW RV L               A  G +G  LR +F+QI V++ HQNGRDTH+RQV+
Sbjct:   89 SYTPNKISVRAGNSFHDLREIKTVDLDEPSGWTRVSLVKD-------ENEPGALNGGDGECLRTYFLQIAVLSNHQNGRDTHVRQVK 168
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: A0A2L2YC98_PARTP (Anaphase-promoting complex subunit 10 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YC98_PARTP)

HSP 1 Score: 82.4 bits (202), Expect = 8.650e-18
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP ++SVRAG+ FHDL E+ + ELN P GWV++PL  S                  G  +R + +QI V++ HQNGRDTH+RQ+R
Sbjct:   81 SYTPNRVSVRAGTHFHDLQEIEVVELNEPSGWVKIPLKDS-----------------YGQPIRTYLVQIAVLSNHQNGRDTHLRQIR 150
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: A0A7S0RL68_9CHLO (Anaphase-promoting complex subunit 10 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RL68_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-17
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP K+S+RAG+SFHDL E+ + +L  PVGW+  PL   G                    +RA+F+Q+ V++ HQNGRDTHIRQV+
Sbjct:   77 SYTPNKLSIRAGNSFHDLREIRVVDLEEPVGWMSFPLTPDGSNQEY---------------MRAYFVQLAVLSNHQNGRDTHIRQVK 148
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: A0A7S3AMX8_9EUKA (Anaphase-promoting complex subunit 10 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AMX8_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 1.440e-17
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP KIS+RAG++FHDL E+ ++ELN P GWV +                  A G++   LR HFIQ+ ++A HQNGRDTHIRQ++
Sbjct:  117 SYTPSKISIRAGTTFHDLQEIHVEELNEPSGWVTI--------LPPREPTSDTAPGSQ--LLRTHFIQVAILANHQNGRDTHIRQIK 193
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BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Match: A0A7S3SUE3_EMIHU (Anaphase-promoting complex subunit 10 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SUE3_EMIHU)

HSP 1 Score: 82.0 bits (201), Expect = 1.580e-17
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGXXXXXXXXXXXAAAGAEGPA--LRAHFIQICVVAMHQNGRDTHIRQVR 261
            SYTP KIS+R+G++FHDL E+ ++EL+ P GW  +   +             AA G EG    LR HFIQ+ V+A HQNGRDTHIRQ++
Sbjct:   86 SYTPAKISIRSGTTFHDLQEIHVQELHEPSGWHTILPTIE-----------QAAGGGEGGGGPLRTHFIQVAVLANHQNGRDTHIRQIK 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15689.3296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV7_ECTSI4.470e-3573.56Anaphase-promoting complex subunit 10 n=2 Tax=Ecto... [more]
F0XYN0_AURAN1.510e-2151.72Anaphase-promoting complex subunit 10 n=1 Tax=Aure... [more]
W7U0V1_9STRA1.660e-1949.44Anaphase-promoting complex, subunit 10/DOC domain ... [more]
A0A1W0A3Z8_9STRA4.890e-1951.72Anaphase-promoting complex subunit 10 n=1 Tax=Thra... [more]
A0A0M0J4G7_9EUKA5.640e-1950.00Anaphase-promoting complex subunit 10-like protein... [more]
C1E9N2_MICCC1.150e-1850.57Anaphase-promoting complex subunit 10 n=1 Tax=Micr... [more]
A0A2L2YC98_PARTP8.650e-1845.98Anaphase-promoting complex subunit 10 (Fragment) n... [more]
A0A7S0RL68_9CHLO1.170e-1745.98Anaphase-promoting complex subunit 10 n=1 Tax=Pyra... [more]
A0A7S3AMX8_9EUKA1.440e-1748.28Anaphase-promoting complex subunit 10 n=1 Tax=Hapt... [more]
A0A7S3SUE3_EMIHU1.580e-1748.31Anaphase-promoting complex subunit 10 n=2 Tax=Emil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15689contigH-paniculata_contig15689:1095..2115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D7FYV7
Preferred nameANAPC10
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K03357,ko:K11788
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00230,map01100,map01110,map01130,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00048,M00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005739,GO:0005829,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007113,GO:0008150,GO:0008152,GO:0008156,GO:0008283,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010087,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0016043,GO:0016567,GO:0016604,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031145,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0036211,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045786,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070979,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090329,GO:0098772,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234,GO:2000104,GO:2000112,GO:2000113,GO:2000736
EggNOG free text desc.anaphase-promoting complex-dependent catabolic process
EggNOG OGsCOG5156@1,KOG3437@2759
Ec32 ortholog descriptionPutative subunit of the Anaphase Promoting Complex
Ec32 orthologEc-19_002640.1
EC6.3.3.1,6.3.4.13
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.4364607-CDS-H-paniculata_contig15689:1094..12891622929251.4364607-CDS-H-paniculata_contig15689:1094..1289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 1095..1289 -
1691480787.7770984-CDS-H-paniculata_contig15689:1094..12891691480787.7770984-CDS-H-paniculata_contig15689:1094..1289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 1095..1289 -
1622929251.4507022-CDS-H-paniculata_contig15689:2049..21151622929251.4507022-CDS-H-paniculata_contig15689:2049..2115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 2050..2115 -
1691480787.792296-CDS-H-paniculata_contig15689:2049..21151691480787.792296-CDS-H-paniculata_contig15689:2049..2115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15689 2050..2115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15689.3296.1prot_H-paniculata_contig15689.3296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15689 1095..2115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15689.3296.1

>prot_H-paniculata_contig15689.3296.1 ID=prot_H-paniculata_contig15689.3296.1|Name=mRNA_H-paniculata_contig15689.3296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
SYTPKKISVRAGSSFHDLVEVTMKELNVPVGWVRVPLAVSGGGGGAAAAA
ADAAAGAEGPALRAHFIQICVVAMHQNGRDTHIRQVR
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mRNA from alignment at H-paniculata_contig15689:1095..2115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15689.3296.1 ID=mRNA_H-paniculata_contig15689.3296.1|Name=mRNA_H-paniculata_contig15689.3296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-paniculata_contig15689:1095..2115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTTACACACCTAAGAAGATATCGGTCCGAGCCGGCAGCAGCTTTCACGA
TCTAGTCGAGGTCACGGTAAGTTGTTTATTTGTTTATTTGTTATTCGTGT
AAGGTCGTGTCGTGTGTTTCAGCTAGAAGTAGCTGTTACTGTTCGCGCTG
TCTCAACATTAATTTCCAAGGGGTCGAAGCCTCTCGTGGGGGGAAGACTA
ACAGGTAGCTTCGGGACTCTTGATACGCTAGCGTGAGCGGATATGCCGAC
AATCGAAAAATGGCCTTGGCGATTTGCGATTGCCGTAGTGAAACAGACCA
CACCTCGGATGATGAAGGTCGATAAAGGCAACAAAGGTCGTCGCGAGTTT
TGGAACTATGCATGGACAGTACGAGAACACTTGGCGCTTTCCAAAATCCG
TTCGAATCGAAAGATAGCTGCAGGTCCTCCACACCTTGGTGGAGTGTTTG
ATTGTAGAGTATGACCCAGAAGTATCTCCACAAATTTTTCTTCTTTCGAG
CAGTAAAAATTGAAGGTTCCATGAAGATATTTCTACTGAAAAAGCTGGAA
CCTCCATCCGAGCTGTGAAATTAAACCGCGCAGCGATAGCACGCTCTCGA
CAATGCAAGCTCGATATGAGTAATGTCCTTGGACGGCCGTTCATCGGCAC
TGGATTGCTGAGCTACGTACGTCAGTCAGCTGTATATACAGACAAACGCT
TGCCACATCATTTGCCGTAGGCAGCAACAGCTTCGTGTCCCGCTGAAGGA
AGGGCGAGCAGTGGTTGATTTGAGTACGCGTCCCCTCCCACACCCCTTGA
ACACCCGCTCTTGGGCTTGACTACAGATGAAGGAGCTGAACGTCCCCGTT
GGTTGGGTAAGAGTGCCGCTAGCTGTATCCGGCGGTGGTGGCGGAGCGGC
AGCGGCGGCGGCAGACGCCGCCGCCGGCGCAGAGGGGCCCGCTCTGCGAG
CGCATTTTATACAGATCTGCGTCGTGGCGATGCACCAGAATGGTAGAGAT
ACCCACATCCGACAGGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15689:1095..2115-

>mRNA_H-paniculata_contig15689.3296.1 ID=mRNA_H-paniculata_contig15689.3296.1|Name=mRNA_H-paniculata_contig15689.3296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig15689:1095..2115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTTACACACCTAAGAAGATATCGGTCCGAGCCGGCAGCAGCTTTCACGA
TCTAGTCGAGGTCACGAGTTACACACCTAAGAAGATATCGGTCCGAGCCG
GCAGCAGCTTTCACGATCTAGTCGAGGTCACGATGAAGGAGCTGAACGTC
CCCGTTGGTTGGGTAAGAGTGCCGCTAGCTGTATCCGGCGGTGGTGGCGG
AGCGGCAGCGGCGGCGGCAGACGCCGCCGCCGGCGCAGAGGGGCCCGCTC
TGCGAGCGCATTTTATACAGATCTGCGTCGTGGCGATGCACCAGAATGGT
AGAGATACCCACATCCGACAGGTGAGGATGAAGGAGCTGAACGTCCCCGT
TGGTTGGGTAAGAGTGCCGCTAGCTGTATCCGGCGGTGGTGGCGGAGCGG
CAGCGGCGGCGGCAGACGCCGCCGCCGGCGCAGAGGGGCCCGCTCTGCGA
GCGCATTTTATACAGATCTGCGTCGTGGCGATGCACCAGAATGGTAGAGA
TACCCACATCCGACAGGTGAGG
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