mRNA_H-paniculata_contig15688.3295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15688.3295.1
Unique NamemRNA_H-paniculata_contig15688.3295.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15688.3295.1 vs. uniprot
Match: D8LSG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSG5_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.000e-45
Identity = 107/250 (42.80%), Postives = 142/250 (56.80%), Query Frame = 1 
Query:   10 VRTPRPRALEEKAWQEALKAKAEAISASPREQXXXXXXXXXXXXXXSSSVYRKAVSKRVRKGVFQGVRMPSDRLSKSFAGGTELDALPGRLESVLFPERHVYVDWPC-DKALPALARDVASSPVRYAVAFRSTQPRIMLEDAHKETHGWSGPGAYEWDGSIPPTNGNEDNNANLNHGS-----------------------SPGGTGALRPKGIAVRDPSRKSASFRPESSAFIAPSQANVREYAAVPSS 687
            +R PR R+LE++A +EA++AKA+A++ASPRE               +    ++  +   ++ ++ G+ MP +   K FAGG E+DALPGRLES++FP+R  YVDWP  D +LPALA DV  SP+R+AVAFRS QPRI+  D  +ET GW GPGAYEWD   P  N                                         G  RP+GIAVRDP R S +FR  SSAF++P+Q NVR +A  PSS
Sbjct:  164 IRPPRSRSLEDQALREAIEAKAQAMAASPREGKPDPETQRRLRGGGNRRKLKRGPAASDKRDMYHGIAMPGNTFEKPFAGGNEVDALPGRLESLIFPQR--YVDWPKEDASLPALALDVQRSPIRHAVAFRSKQPRIVCYDPQRETRGWDGPGAYEWD-DRPDDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSAEKGGARPRGIAVRDPGRPSPAFREGSSAFLSPTQTNVRGFALAPSS 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15688.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG5_ECTSI1.000e-4542.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15688contigH-paniculata_contig15688:494..2343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size687
Cds size687
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15688.3295.1prot_H-paniculata_contig15688.3295.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15688 494..2343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.364035-CDS-H-paniculata_contig15688:493..5801622929251.364035-CDS-H-paniculata_contig15688:493..580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 494..580 +
1691480787.7456589-CDS-H-paniculata_contig15688:493..5801691480787.7456589-CDS-H-paniculata_contig15688:493..580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 494..580 +
1622929251.3784862-CDS-H-paniculata_contig15688:1102..13261622929251.3784862-CDS-H-paniculata_contig15688:1102..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 1103..1326 +
1691480787.7534363-CDS-H-paniculata_contig15688:1102..13261691480787.7534363-CDS-H-paniculata_contig15688:1102..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 1103..1326 +
1622929251.3888018-CDS-H-paniculata_contig15688:1567..16641622929251.3888018-CDS-H-paniculata_contig15688:1567..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 1568..1664 +
1691480787.7605247-CDS-H-paniculata_contig15688:1567..16641691480787.7605247-CDS-H-paniculata_contig15688:1567..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 1568..1664 +
1622929251.4034214-CDS-H-paniculata_contig15688:2064..23431622929251.4034214-CDS-H-paniculata_contig15688:2064..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 2065..2343 +
1691480787.768107-CDS-H-paniculata_contig15688:2064..23431691480787.768107-CDS-H-paniculata_contig15688:2064..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15688 2065..2343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15688.3295.1

>prot_H-paniculata_contig15688.3295.1 ID=prot_H-paniculata_contig15688.3295.1|Name=mRNA_H-paniculata_contig15688.3295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
TSPVRTPRPRALEEKAWQEALKAKAEAISASPREQQQSPKRRGRGGGAAS
SSVYRKAVSKRVRKGVFQGVRMPSDRLSKSFAGGTELDALPGRLESVLFP
ERHVYVDWPCDKALPALARDVASSPVRYAVAFRSTQPRIMLEDAHKETHG
WSGPGAYEWDGSIPPTNGNEDNNANLNHGSSPGGTGALRPKGIAVRDPSR
KSASFRPESSAFIAPSQANVREYAAVPSS
back to top

mRNA from alignment at H-paniculata_contig15688:494..2343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15688.3295.1 ID=mRNA_H-paniculata_contig15688.3295.1|Name=mRNA_H-paniculata_contig15688.3295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1850bp|location=Sequence derived from alignment at H-paniculata_contig15688:494..2343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATCGCCAGTTCGGACTCCTAGGCCTCGGGCTCTGGAGGAGAAAGCTTG
GCAAGAGGCTCTAAAGGCCAAGGCGGAAGCCATCTCGGTGAGAACATGAA
TACCTGTTTGTCACGCTTTGGTGATCACGCATAATCCCCTCTCTATTGTG
TCCGAATTATGTCGGATCGGATAAATATTAACACCCCAAGATGTACAATA
TGTTCGATGAGCGCTATTCTAATATATGTCGTGCTTCGTTTCCTGCATCT
GTACTCCATACATCACGAGTATATCAGCATTGGTACCCCACAATTATTTG
TACATCGATTATAGGTATGTCCTTGCGTTTTGTACTCAAGTCACCAGGAT
AAATCATGATGATAAATCGTAGTAATGAGCAGAACAAGCATAAAACACAC
GGGGATTCTTATGGGACTCCTTGCGAAAATCTAGACAAAGTCACATCAAG
CAACTAGAGATAGTTTGCAAAAGCACGGGTGAGAAACCCAATGAACAAAA
TCGATTTCCTGTAACACCGATAGAGTACGTGGTGGTTGACTGATAATTCC
AAGGTATCAGCGTTAACCTAGTGGTTTTATTTTGATTTCTTAAGATATAT
TTCCTACAGGCTAGTCCCCGCGAGCAGCAGCAGTCACCGAAACGACGAGG
GCGAGGTGGTGGGGCCGCGTCAAGTAGCGTGTACAGGAAAGCAGTTTCCA
AGCGCGTAAGAAAAGGCGTTTTTCAGGGCGTCCGCATGCCGAGCGACAGA
TTGTCGAAATCGTTCGCCGGAGGGACCGAGCTGGACGCGCTGCCGGGAAG
GCTAGAATCAGTGTTGTTTCCGGAAAGGCACGTGTTGCACGTTCAAACTT
GAGCAGGATACGAGGCAGTATTAGCGAGAGTATGCCAGATCTGGTTACGG
CAGATCTCGTTTCAAAGACGGTGACGGCACCAGCACGGGACCTCTTTGCA
TACGATACATTTTGAAGAACAAGAATCGCCCTGGATCATCGAAGAGGATA
TGTACAGAGGACCTCGGCGTTACTGAAATATAAACATATTCTGTAACAGG
TTCCGCCGCACTTTGTTTTCTCAGGTATGTGGATTGGCCATGCGATAAGG
CTCTCCCAGCACTAGCACGGGATGTGGCCTCATCACCGGTTCGCTACGCC
GTAGCATTCCGCTCTACACAAGTGAGAGAACATGGGGAGCTTAATTGTTT
AGACTCAGCAAACGACATCTTTGTGCGTCAGAATACGTCGCGTGAGCCGT
ATTCCCTTCTGTACTATGAATGCCTGTTCTTGTGTGTCTTCTGGACTGTG
AACTTTATGGTTATGTTTTGATGAGATCTGTACGATACCATTTTCGTTGA
TGTCGAGAAGCGTATAATTCTGTGGAACTCCACAATCTGTATCCTCGGCA
TAATTTCTTAGTGGTATCATTCGCCGCGTTTTATACCGACACGCCTAGTT
TGCAAACCCCCTCTCCCCCTAATACCACATGGACACTTTGCCACCTGCGC
GCCGCGATCCTTTCTCCACGCCTTAAATTGTTGAAAAACACGTCATTTGG
GGGCTTGGCCACAACTTGTAGCCTCGCATCATGTTAGAAGATGCTCATAA
AGAAACACACGGATGGAGTGGCCCTGGGGCGTACGAGTGGGACGGTTCGA
TACCGCCCACGAATGGTAATGAAGACAACAACGCTAATCTTAACCATGGC
TCATCACCTGGGGGCACAGGAGCCCTCAGACCAAAGGGCATAGCCGTGCG
GGACCCCTCGCGAAAGTCTGCGTCTTTCAGGCCAGAGTCAAGTGCTTTCA
TTGCCCCGTCTCAGGCTAATGTGCGGGAGTATGCGGCGGTGCCATCGAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15688:494..2343+

>mRNA_H-paniculata_contig15688.3295.1 ID=mRNA_H-paniculata_contig15688.3295.1|Name=mRNA_H-paniculata_contig15688.3295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig15688:494..2343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATCGCCAGTTCGGACTCCTAGGCCTCGGGCTCTGGAGGAGAAAGCTTG
GCAAGAGGCTCTAAAGGCCAAGGCGGAAGCCATCTCGACATCGCCAGTTC
GGACTCCTAGGCCTCGGGCTCTGGAGGAGAAAGCTTGGCAAGAGGCTCTA
AAGGCCAAGGCGGAAGCCATCTCGGCTAGTCCCCGCGAGCAGCAGCAGTC
ACCGAAACGACGAGGGCGAGGTGGTGGGGCCGCGTCAAGTAGCGTGTACA
GGAAAGCAGTTTCCAAGCGCGTAAGAAAAGGCGTTTTTCAGGGCGTCCGC
ATGCCGAGCGACAGATTGTCGAAATCGTTCGCCGGAGGGACCGAGCTGGA
CGCGCTGCCGGGAAGGCTAGAATCAGTGTTGTTTCCGGAAAGGCACGTGC
TAGTCCCCGCGAGCAGCAGCAGTCACCGAAACGACGAGGGCGAGGTGGTG
GGGCCGCGTCAAGTAGCGTGTACAGGAAAGCAGTTTCCAAGCGCGTAAGA
AAAGGCGTTTTTCAGGGCGTCCGCATGCCGAGCGACAGATTGTCGAAATC
GTTCGCCGGAGGGACCGAGCTGGACGCGCTGCCGGGAAGGCTAGAATCAG
TGTTGTTTCCGGAAAGGCACGTGTATGTGGATTGGCCATGCGATAAGGCT
CTCCCAGCACTAGCACGGGATGTGGCCTCATCACCGGTTCGCTACGCCGT
AGCATTCCGCTCTACACAAGTATGTGGATTGGCCATGCGATAAGGCTCTC
CCAGCACTAGCACGGGATGTGGCCTCATCACCGGTTCGCTACGCCGTAGC
ATTCCGCTCTACACAACCTCGCATCATGTTAGAAGATGCTCATAAAGAAA
CACACGGATGGAGTGGCCCTGGGGCGTACGAGTGGGACGGTTCGATACCG
CCCACGAATGGTAATGAAGACAACAACGCTAATCTTAACCATGGCTCATC
ACCTGGGGGCACAGGAGCCCTCAGACCAAAGGGCATAGCCGTGCGGGACC
CCTCGCGAAAGTCTGCGTCTTTCAGGCCAGAGTCAAGTGCTTTCATTGCC
CCGTCTCAGGCTAATGTGCGGGAGTATGCGGCGGTGCCATCGAGCCCTCG
CATCATGTTAGAAGATGCTCATAAAGAAACACACGGATGGAGTGGCCCTG
GGGCGTACGAGTGGGACGGTTCGATACCGCCCACGAATGGTAATGAAGAC
AACAACGCTAATCTTAACCATGGCTCATCACCTGGGGGCACAGGAGCCCT
CAGACCAAAGGGCATAGCCGTGCGGGACCCCTCGCGAAAGTCTGCGTCTT
TCAGGCCAGAGTCAAGTGCTTTCATTGCCCCGTCTCAGGCTAATGTGCGG
GAGTATGCGGCGGTGCCATCGAGC
back to top