mRNA_H-paniculata_contig15672.3292.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15672.3292.1
Unique NamemRNA_H-paniculata_contig15672.3292.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15672.3292.1 vs. uniprot
Match: D7FRF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.760e-22
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:  142 MVFAGQDHWRRHPMLTGCYRRPFPGLGIAAVVFAGYCVVDGTFKWATAPAPKVKYFEPGMFKYEQE 339
            MVF GQD WR+HPMLTGCY+RPFPGLGIA  +FAGYCV+DGT K+ATAP   +  + PG FK+E +
Sbjct:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATAPTKDL--YAPGTFKFEAQ 64
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BLAST of mRNA_H-paniculata_contig15672.3292.1 vs. uniprot
Match: W4GNJ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNJ0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.130e-9
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  133 IGTMVFAGQDHWRRHPMLTGCYRRPFPGLGIAAVVFAGYCVVD 261
            + TMV AGQD WR HP LTGC ++P PG GIAA +FA Y  VD
Sbjct:   22 LNTMVLAGQDAWRSHPFLTGCIKKPIPGFGIAAGIFAVYLTVD 64
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BLAST of mRNA_H-paniculata_contig15672.3292.1 vs. uniprot
Match: K3WAK3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAK3_GLOUD)

HSP 1 Score: 62.0 bits (149), Expect = 1.270e-8
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  142 MVFAGQDHWRRHPMLTGCYRRPFPGLGIAAVVFAGYCVVD 261
            MV A QD WR+HP ++GC ++PFPGLGIA+ +F  Y VVD
Sbjct:    1 MVLAHQDAWRKHPFISGCAKKPFPGLGIASAIFGAYLVVD 40
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BLAST of mRNA_H-paniculata_contig15672.3292.1 vs. uniprot
Match: A0A024TWK1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWK1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.050e-8
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  142 MVFAGQDHWRRHPMLTGCYRRPFPGLGIAAVVFAGYCVVD 261
            MV AGQD WR HP LTGC ++P PG G+AA +FA Y  VD
Sbjct:    1 MVLAGQDAWRSHPFLTGCIKKPVPGFGMAAGIFAVYLTVD 40
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BLAST of mRNA_H-paniculata_contig15672.3292.1 vs. uniprot
Match: A0A1V9Y7Y0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7Y0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.910e-8
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  142 MVFAGQDHWRRHPMLTGCYRRPFPGLGIAAVVFAGYCVVD 261
            MV A QD WR+HP L+ C ++PFPGLGIAA +F+ Y VVD
Sbjct:    1 MVLAHQDAWRKHPFLSNCSKKPFPGLGIAAGIFSVYLVVD 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15672.3292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FRF4_ECTSI1.760e-2266.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4GNJ0_9STRA3.130e-962.79Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
K3WAK3_GLOUD1.270e-860.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024TWK1_9STRA5.050e-862.50Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Y7Y0_9STRA6.910e-862.50Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15672contigH-paniculata_contig15672:51..4048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog2880.D7FRF4
Hectar predicted targeting categorysignal anchor
EggNOG OGs2E7JH@1,2SE52@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000750.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1392
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15672.3292.1prot_H-paniculata_contig15672.3292.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15672 1074..3907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.0845304-UTR-H-paniculata_contig15672:50..10731622929251.0845304-UTR-H-paniculata_contig15672:50..1073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15672 51..1073 -
1691480787.6711216-UTR-H-paniculata_contig15672:50..10731691480787.6711216-UTR-H-paniculata_contig15672:50..1073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15672 51..1073 -
1622929251.176392-UTR-H-paniculata_contig15672:3907..40481622929251.176392-UTR-H-paniculata_contig15672:3907..4048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15672 3908..4048 -
1691480787.7024577-UTR-H-paniculata_contig15672:3907..40481691480787.7024577-UTR-H-paniculata_contig15672:3907..4048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15672 3908..4048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.0966632-CDS-H-paniculata_contig15672:1073..11591622929251.0966632-CDS-H-paniculata_contig15672:1073..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15672 1074..1159 -
1691480787.6819298-CDS-H-paniculata_contig15672:1073..11591691480787.6819298-CDS-H-paniculata_contig15672:1073..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15672 1074..1159 -
1622929251.1078146-CDS-H-paniculata_contig15672:3765..39071622929251.1078146-CDS-H-paniculata_contig15672:3765..3907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15672 3766..3907 -
1691480787.69197-CDS-H-paniculata_contig15672:3765..39071691480787.69197-CDS-H-paniculata_contig15672:3765..3907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15672 3766..3907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15672.3292.1

>prot_H-paniculata_contig15672.3292.1 ID=prot_H-paniculata_contig15672.3292.1|Name=mRNA_H-paniculata_contig15672.3292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MVFAGQDHWRRHPMLTGCYRRPFPGLGIAAVVFAGYCVVDGTFKWATAPA
PKVKYFEPGMFKYEQEKEDDDDDDE*
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mRNA from alignment at H-paniculata_contig15672:51..4048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15672.3292.1 ID=mRNA_H-paniculata_contig15672.3292.1|Name=mRNA_H-paniculata_contig15672.3292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3998bp|location=Sequence derived from alignment at H-paniculata_contig15672:51..4048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTAGTTGCAGCATCAGTGTTCCATTAAATTCATCATCAAGCGGTCAGCC
GTGCACAGGTTTGCGGCCCGTAAGGCAAACGGGGCACTGCAAGGCAACTG
CTGGGTATTTGGAAGGGATAGTGAAGGTTTGTATTGGAACCATGGTGTTC
GCTGGGCAGGATCACTGGCGAAGGCACCCCATGCTGACCGGCTGCTACAG
GCGGCCGTTTCCGGGTTTGGGCATCGCGGCGGTCGTTTTTGCCGGTTACT
GTGTAGTCGATGGCACCTTCAAATGGGCGACAGGTGAGTTGCTGTCCCTC
TAACTGTCCTGTATTGTATCGTCGTGTCCGATACTGTAATTTAGCTTTGT
GCAGAGTATCAGGACCGCTCGAGCTTGCGTGTATGCTGTCTAAACATGGC
ACGGTGCATTGTTGCACGTTTTCTACATGTGATGCCAAGAGACGGCTTTG
TACAGCGACGTCCTCGTCCATGCCCTTGTTCATAATACTATATAGTAGTA
GATTAGGTAAAAGACGTTCCTTGCTCTCCTGTCCAAGTGGGTCATTATTG
ACTACACGACACATCGCTTAGGTGGGACTGTTGCAACTTTGGAGAGCCTG
ACAGACAGGCGATGGCTCCTGAGTGACAAGGTCTAAGTATTCATGCCTCC
ATAAAACGCTAGTTCCAGAGCGTTCTTTTGTTTTGGTATTGATACGGAAC
AACTGTACAGGAGGTAGGTACATCAAGTTCCACTGCAGCAGTCAGTAGTA
CACTGCACCGAATTGCCGTTTTTCCAGCTGCGACACTCATCTCTGATGAG
GTCCGAGTTTCAGTTTTACACACTCCCAAGAATAAGCTGCACCCCTTGTG
TGGGGGACAACAAATTGTAGTTAGTTGGGGCATGATGCATTGTCTGCCCA
AATTTAGTTCAGCGTGCAGCAAGGCAGTACTGCTGACGGTGAGGCTATTC
TCCGTATGTATCCTGCTGATACCCAGCCATCTCAATACCCGTACTGACGA
ATTATGTCGGACTTGTGAACACAGACGGTTGTTGTCCTCTAGATCGCCGA
TCAATTTCTGGTGGTGACCAAGAGATGATGGTGAACATTCCAGTAGCTCT
GGTGGGGAGCGCACTTGACGAGAACGGAGCTATCGCCGGCAGTACTGTGC
AGCCTCTGTGTTTTTCTCTGTATCCGTGAGCGCTAGTGGGGTACAGTCAC
ACCACACTCCGTATGCCATCTATCTACTACGAGCTTCCATTGCCTCCCTT
GCGAACTAAAGTGAAAATAGCGTATGGAAGGGATTGCCCTTCGAAAAGAT
GCTGCATACACTGACCGCGAATTTCTGGTCCCGGCAGTCACACCCTTGGA
GACTTCCCTACTAAGATGGTCTGAAGTACTTCACTAGGTGTACTAAAATA
TTGTCAGTCTCACTCGCGGAAGTGACCGGAGCACCTCCAAACACCCTAAC
AGAACGAAAGTACATCACACAGTACTCACCATGGCCTTCTCAGACCCAAA
TCACTGGATGGTCTCAACCAATAGCGAAAACAATAGCATTAGAACCACGG
ACCAACGCCCGAACGGGTAGGGTAGCTCGTGAACTAAGCATGACTGGAAG
TCTAGTCAGAGGTCTTTGAGTGGGTGCAGCCCCCACACTGCCTACTTGGT
TCGGCCGAACCGGGGTGGCGCCTACCCCACAGAAGGAACAAATAACTCTG
TTCTGTTGAAGAAAACCTAGACGTACTTCGGTATGGAAGCATCGAAAAAA
GGCTTTTGCCTCAGCCTTCCGGGGGTTAACAGAAAAAAAATAGCATTAGA
ACGAGCCCGCTGCTGCGCTTGACGTCGTGATGCAGTAGAACAGCATAGAG
ACACGACGTGAATATCGCAAAAAAAGAAGAAAAGAACGAAGAACAGATAC
AGGGCTTGCAGTTCGAGACCAATCCAAATGTATAATTTTCAAAATGCGGA
GAACATTTGGGACAGGGACCAATGAAAACATGAACTATGAGCTGTCCTTA
TATGCGGAGATATTCAGCTAGAGCACCACGTCAAAAGAACTCTATATTAT
ACATATATGATGTAAGTGTCCCTTTATTTAAGCTTGGAACGGGTAGCCAA
TGCACACGATGTATGCTGTCAGGCGTTTTCCAGTCCGGTTTCTCGAAGAA
ACGGATTCTAAGTCGGCGGATATATTGTGTTTTTCTGCAAGGAAAGCCTC
CTTGCACAAGGATCCTTATTATCCGGGCTGGTTCCAACCTCCAATGTGGA
CTCCCCCCGGAAAAGCTAAAGACTAAGCTTGTGCTGCCACAAAGTGTTTT
TCCCAAGGCTCGAAAGAGAATCTCGCGCTACTGTAGCAGGGAAGCTCAGG
GAAAAGTCCTCACGTACGACTCATGATATTACTATTTCCTTGGGGCTCGC
GCTTGGGCTGAAGCACACGCTACTGCGAGAAATCGTCAGCCTTTCCGTTT
CAAGAAGCAGGAAAAAATATCTGATTTTTTTTGTCAAGATCAGGATGTTG
GCTCGGTTGGCCGTTCTGCCTTTGTCTTTGCCTTCGCCTTGAGTTTGGTT
ACTTTTCGTTATGTTGATTTCGCGATCGCATGATCGTATACTTGGCCGTA
CCATGTACATACATCACCGCAAGCTGCTGTCACAATGCACCCGGGGGTGC
ACCCGTCTTTTCTGTTCGAAATCCGGGCTCGGAGGTTCTGTTTTTTTATT
CGTTACACCACCCAGAGGTGTCGAGGGTATATTGACTCGCTTGTTACTGC
CATAGCATTATGACGGCACCGGGCATTATTAAAGCCACCCATGGTACACT
TTGCGATAACCTGCGCTTCCGTCTCTCCTTTTCTGTCTCCCTCTGTCCTC
TTACACGCTGACTTCTGTCTGTACTGACCCATGCTGCAGCTCCGGCCCCC
AAAGTAAAGTACTTCGAACCAGGAATGTTCAAGTATGAGCAGGAAAAAGA
AGACGATGATGACGATGATGAGTGATGGATGCTGTCATCCCTTATAGCCG
TTAGTGTTTCTTGGAGCGGAGGGTGGCAAGGCGGAAGGGCTTTTTTTAGT
TATTGGAATGCGGTTTGAAGTCGTCAGTTTCTTGTTTGTCCAACACGTGA
GTCCGATCGTTCAGACTCGCGGTCGATATAGGCTATGTTGTTCTGGTGAC
TGTTTCCCGAAGCGGGGTCGGTGGCGCGTACGTACAAGGTGCTGGGGCAG
TTTCTTGGTGTATTGCTATGAAAACTGCTACGAATTAGTTGCTTGGTCTA
GGGTGGGAACATGACAGCGCTTGTTAGGGGTGGTGAGGCAACATTGTAAC
CTTGGAAAGCGACGCTGAGTAGCGTCATGAATTCACTAGTGACGAGTTCT
AAAGGCGAGGAAAATCGATGGATATCTACGTAACATGAATATTATGTTTG
TCAATGGACGTGCTGTTTTGCTGTCGCGTGGCTCTGTGCTTGCCTGCAGC
AGGCTCCATTTCTTGAGCTTGCTAACTTTCTACACCATACGAGAAGCGAT
TTCTTCTCGGAGGGGGTAGAGTCGTCTCCCACCCCGATGTCTCGTAACAT
ACTCCACATAGCGTTGTTGGTTGTTGGTTGTTTGTTGCCTGCGCACGGAC
TGGGGAACCTTGCGCTGTGATAGTATAGTGAGGTACTGGACGATACCGGA
CCAACGTCATGGTTAGCTTTTACTCCACTACCCAGGGTTTATAGTACCCG
TTACCGAGCCATTTGCCAACCCTCTTGATCAGGACAACAGTATCGAGACA
GGGAGAAAGAACGGCCGAGTTCGTATGGACATCGCATTCAATTAGAGTTA
CATATACCTGCGGCAGTTTATTCCAAGACACCATGATCAGAAGTGCTTGC
AGTAAGCACGCACTGTACAACCGATGTGGCGATATTGTAACGAAACAGTA
CAGTTATCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGTGCTGCG
CATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTGAAACTCCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15672:51..4048-

>mRNA_H-paniculata_contig15672.3292.1 ID=mRNA_H-paniculata_contig15672.3292.1|Name=mRNA_H-paniculata_contig15672.3292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig15672:51..4048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTCGCTGGGCAGGATCACTGGCGAAGGCACCCCATGCTGACCGG
CTGCTACAGGCGGCCGTTTCCGGGTTTGGGCATCGCGGCGGTCGTTTTTG
CCGGTTACTGTGTAGTCGATGGCACCTTCAAATGGGCGACAGATGGTGTT
CGCTGGGCAGGATCACTGGCGAAGGCACCCCATGCTGACCGGCTGCTACA
GGCGGCCGTTTCCGGGTTTGGGCATCGCGGCGGTCGTTTTTGCCGGTTAC
TGTGTAGTCGATGGCACCTTCAAATGGGCGACAGCTCCGGCCCCCAAAGT
AAAGTACTTCGAACCAGGAATGTTCAAGTATGAGCAGGAAAAAGAAGACG
ATGATGACGATGATGAGTGACTCCGGCCCCCAAAGTAAAGTACTTCGAAC
CAGGAATGTTCAAGTATGAGCAGGAAAAAGAAGACGATGATGACGATGAT
GAGTGA
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