mRNA_H-paniculata_contig15664.3289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15664.3289.1
Unique NamemRNA_H-paniculata_contig15664.3289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15664.3289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15664contigH-paniculata_contig15664:3987..4781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size796
Cds size795
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.7762842-CDS-H-paniculata_contig15664:3986..47811622929250.7762842-CDS-H-paniculata_contig15664:3986..4781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15664 3987..4781 +
1691480787.6179702-CDS-H-paniculata_contig15664:3986..47811691480787.6179702-CDS-H-paniculata_contig15664:3986..4781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15664 3987..4781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15664.3289.1prot_H-paniculata_contig15664.3289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15664 3987..4781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15664.3289.1

>prot_H-paniculata_contig15664.3289.1 ID=prot_H-paniculata_contig15664.3289.1|Name=mRNA_H-paniculata_contig15664.3289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
PPPPPPLPSPLLSDLSCSKARSIEKLVRTSAIGLPCRRPGSTAFSSSPPT
SLLAFLLQVPPLLLLPPPALSPALAPPPPPPSTFPFPASALPAGPVEAPT
AEPPSSTFTETSMPFFPLSPAAGDGASSSLLMFRLTSPPPPAAAAEADPP
AHGDPSCPLLAPAPVPTAGSWSPSLSPSESLELELSWLARHVRACTTVGL
APRPILPPSEVLRSDILRIAKPGALASPAPGPTPPRGPPPPLPISTAEGV
SNAGAGNGGPLTRLN
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mRNA from alignment at H-paniculata_contig15664:3987..4781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15664.3289.1 ID=mRNA_H-paniculata_contig15664.3289.1|Name=mRNA_H-paniculata_contig15664.3289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig15664:3987..4781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCGCCGCCGCCACCGCTGCCGTCGCCACTTTTGTCAGACTTGAGCTG
CTCTAAGGCTCGATCAATCGAAAAGTTAGTCAGAACGTCCGCGATAGGGT
TGCCGTGTCGACGCCCCGGCTCCACCGCCTTCTCTTCCTCCCCTCCTACC
TCTCTTCTGGCGTTCTTGCTGCAGGTACCACCGCTGCTGCTGCTACCGCC
GCCAGCACTCTCACCAGCGCTTGCTCCGCCTCCGCCTCCCCCATCCACCT
TTCCATTTCCCGCTTCTGCCCTCCCAGCTGGGCCCGTAGAAGCACCTACC
GCGGAACCTCCTTCTTCAACTTTCACGGAAACCTCCATGCCTTTTTTTCC
CCTCTCCCCGGCTGCCGGCGATGGCGCGTCCTCTTCGTTGCTTATGTTTC
GGCTTACATCTCCCCCACCCCCCGCCGCCGCGGCAGAGGCCGACCCGCCA
GCCCACGGGGATCCTTCATGTCCCCTCCTCGCTCCTGCTCCCGTTCCCAC
AGCCGGCAGCTGGTCGCCGTCTCTCTCGCCCTCCGAATCGCTCGAGCTGG
AGTTGAGCTGGCTCGCAAGACACGTGAGGGCCTGCACCACGGTGGGGCTC
GCGCCGAGGCCAATCCTCCCGCCCTCTGAAGTTCTCCGTTCCGACATCTT
GCGGATCGCCAAGCCTGGTGCCTTAGCTTCCCCCGCCCCGGGTCCCACTC
CTCCTCGTGGTCCTCCTCCACCCCTTCCCATCTCCACCGCCGAGGGCGTA
TCAAACGCTGGCGCTGGCAACGGGGGACCCTTGACCCGCTTAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15664:3987..4781+

>mRNA_H-paniculata_contig15664.3289.1 ID=mRNA_H-paniculata_contig15664.3289.1|Name=mRNA_H-paniculata_contig15664.3289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig15664:3987..4781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCGCCGCCGCCACCGCTGCCGTCGCCACTTTTGTCAGACTTGAGCTG
CTCTAAGGCTCGATCAATCGAAAAGTTAGTCAGAACGTCCGCGATAGGGT
TGCCGTGTCGACGCCCCGGCTCCACCGCCTTCTCTTCCTCCCCTCCTACC
TCTCTTCTGGCGTTCTTGCTGCAGGTACCACCGCTGCTGCTGCTACCGCC
GCCAGCACTCTCACCAGCGCTTGCTCCGCCTCCGCCTCCCCCATCCACCT
TTCCATTTCCCGCTTCTGCCCTCCCAGCTGGGCCCGTAGAAGCACCTACC
GCGGAACCTCCTTCTTCAACTTTCACGGAAACCTCCATGCCTTTTTTTCC
CCTCTCCCCGGCTGCCGGCGATGGCGCGTCCTCTTCGTTGCTTATGTTTC
GGCTTACATCTCCCCCACCCCCCGCCGCCGCGGCAGAGGCCGACCCGCCA
GCCCACGGGGATCCTTCATGTCCCCTCCTCGCTCCTGCTCCCGTTCCCAC
AGCCGGCAGCTGGTCGCCGTCTCTCTCGCCCTCCGAATCGCTCGAGCTGG
AGTTGAGCTGGCTCGCAAGACACGTGAGGGCCTGCACCACGGTGGGGCTC
GCGCCGAGGCCAATCCTCCCGCCCTCTGAAGTTCTCCGTTCCGACATCTT
GCGGATCGCCAAGCCTGGTGCCTTAGCTTCCCCCGCCCCGGGTCCCACTC
CTCCTCGTGGTCCTCCTCCACCCCTTCCCATCTCCACCGCCGAGGGCGTA
TCAAACGCTGGCGCTGGCAACGGGGGACCCTTGACCCGCTTAAACCCCCC
GCCGCCGCCACCGCTGCCGTCGCCACTTTTGTCAGACTTGAGCTGCTCTA
AGGCTCGATCAATCGAAAAGTTAGTCAGAACGTCCGCGATAGGGTTGCCG
TGTCGACGCCCCGGCTCCACCGCCTTCTCTTCCTCCCCTCCTACCTCTCT
TCTGGCGTTCTTGCTGCAGGTACCACCGCTGCTGCTGCTACCGCCGCCAG
CACTCTCACCAGCGCTTGCTCCGCCTCCGCCTCCCCCATCCACCTTTCCA
TTTCCCGCTTCTGCCCTCCCAGCTGGGCCCGTAGAAGCACCTACCGCGGA
ACCTCCTTCTTCAACTTTCACGGAAACCTCCATGCCTTTTTTTCCCCTCT
CCCCGGCTGCCGGCGATGGCGCGTCCTCTTCGTTGCTTATGTTTCGGCTT
ACATCTCCCCCACCCCCCGCCGCCGCGGCAGAGGCCGACCCGCCAGCCCA
CGGGGATCCTTCATGTCCCCTCCTCGCTCCTGCTCCCGTTCCCACAGCCG
GCAGCTGGTCGCCGTCTCTCTCGCCCTCCGAATCGCTCGAGCTGGAGTTG
AGCTGGCTCGCAAGACACGTGAGGGCCTGCACCACGGTGGGGCTCGCGCC
GAGGCCAATCCTCCCGCCCTCTGAAGTTCTCCGTTCCGACATCTTGCGGA
TCGCCAAGCCTGGTGCCTTAGCTTCCCCCGCCCCGGGTCCCACTCCTCCT
CGTGGTCCTCCTCCACCCCTTCCCATCTCCACCGCCGAGGGCGTATCAAA
CGCTGGCGCTGGCAACGGGGGACCCTTGACCCGCTTAAAC
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