mRNA_H-paniculata_contig15663.3288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15663.3288.1
Unique NamemRNA_H-paniculata_contig15663.3288.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: D8LPW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.080e-37
Identity = 61/81 (75.31%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTGTITG+D+RPDR LSR LS+ GMQGEGV+D RV+VVKTH+PER G+R+FEA+KAILLVRNPFDA+ SYFNM LT +HD+
Sbjct:  117 VTGTITGSDTRPDRTLSRSLSVMGMQGEGVVDHRVQVVKTHYPERPGFRAFEADKAILLVRNPFDAVDSYFNMALTNTHDR 197
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A6H5L6X4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.780e-33
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            +TGTI   D+RPDR LSR LS+ GMQGEGV+D RV+VVKTH+PER G+R+FEA+KA+LLVRNPFDAI SYFNM LT +HD+
Sbjct:   21 ITGTIXXXDTRPDRTLSRSLSVMGMQGEGVVDHRVRVVKTHYPERPGFRAFEADKAVLLVRNPFDAIDSYFNMALTNTHDR 101
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: H3H0T5_PHYRM (Sulfotransfer_1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0T5_PHYRM)

HSP 1 Score: 120 bits (301), Expect = 1.060e-30
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTG  TG D+RPDR LS+ L +YGM+GEGV+DE V  VKTHFPER GY+ F A+KAIL+VRNP+DAI SYFNM LT +H+K
Sbjct:   94 VTGVYTGCDTRPDRSLSKELQLYGMKGEGVVDESVWFVKTHFPERVGYKDFPAKKAILVVRNPWDAIDSYFNMTLTNTHNK 174
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A421GFX3_9STRA (Sulfotransfer_1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GFX3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.190e-30
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTG  TG D+RPDR LS+ L  YGM+GEGV+DE V  VKTHFPER GY++F A+KAIL+VRNP+DAI SYFNM LT +H+K
Sbjct:   78 VTGVYTGCDTRPDRSLSKELQQYGMKGEGVVDESVWFVKTHFPERVGYKAFPAKKAILVVRNPWDAIDSYFNMTLTNTHNK 158
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A3M6VK79_9STRA (Sulfotransfer_1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK79_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.440e-30
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTG  TG D+RPDR LS+ L  YGM+GEGV+DE V  VKTHFPER GY+ F A KAIL+VRNP+DAI SYFNM LT +H+K
Sbjct:   40 VTGVYTGCDTRPDRSLSKELQKYGMKGEGVVDESVWFVKTHFPERVGYKEFPASKAILVVRNPWDAIDSYFNMTLTNTHNK 120
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A835ZEH8_9STRA (Sulfotransfer_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.390e-30
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLD-ERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
             TG ITG+D+RPDR LSR L+ +G+QGEGV D +RV +VKTH+PER G++ F A++AILLVRNPFDAI SYFNM LT +HDK
Sbjct:   72 ATGVITGSDTRPDRTLSRSLAAFGLQGEGVTDFKRVLLVKTHWPERQGWKRFTAQRAILLVRNPFDAIDSYFNMALTNTHDK 153
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A484EF00_BRELC (Sulfotransfer_1 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF00_BRELC)

HSP 1 Score: 117 bits (294), Expect = 4.560e-30
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            +TG  TG D+RPDR LS+ L  YGM+GEGV+D+ V  VKTHFPER GY+ F A+KAIL+VRNP+DAI SYFNM LT +H+K
Sbjct:   40 ITGVYTGCDTRPDRSLSKDLQQYGMKGEGVVDDSVWFVKTHFPERVGYKEFSAKKAILVVRNPWDAIDSYFNMTLTNTHNK 120
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A0P1A559_PLAHL (Fbox domain containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A559_PLAHL)

HSP 1 Score: 118 bits (295), Expect = 5.400e-30
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTG  TG D+RPDR LS+ L  YGM+GEGV+DE V  VKTHFPER GY+SF A+KAIL+VRNP+D I SYFNM LT +H+K
Sbjct:   93 VTGVYTGCDTRPDRLLSKELQEYGMKGEGVVDESVWFVKTHFPERVGYKSFPAKKAILVVRNPWDTIDSYFNMTLTNTHNK 173
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: A0A225WWE7_9STRA (Sulfotransfer_1 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WWE7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.720e-30
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTG  TG D+RPDR LS+ L  YGM+GEGV+DE V  VKTHFPER GY++F  +KAIL+VRNP+DAI SYFNM LT +H+K
Sbjct:   97 VTGVYTGCDTRPDRSLSKELQQYGMKGEGVVDESVWFVKTHFPERVGYKAFPVKKAILVVRNPWDAIDSYFNMTLTNTHNK 177
[Close]
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Match: D0N7A7_PHYIT (Sulfotransfer_1 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=D0N7A7_PHYIT)

HSP 1 Score: 118 bits (295), Expect = 7.570e-30
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRSFEAEKAILLVRNPFDAISSYFNMCLTQSHDK 243
            VTG  TG D+RPDR LS+ L  YGM+GEGV+DE V  VKTHFPER GY+ F  +KAIL+VRNP+DAI SYFNM LT +H+K
Sbjct:   96 VTGVYTGCDTRPDRSLSKELQQYGMKGEGVVDESVWFVKTHFPERVGYKEFPVKKAILVVRNPWDAIDSYFNMTLTNTHNK 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15663.3288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW7_ECTSI1.080e-3775.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6X4_9PHAE1.780e-3371.60Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
H3H0T5_PHYRM1.060e-3067.90Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A421GFX3_9STRA1.190e-3067.90Sulfotransfer_1 domain-containing protein n=3 Tax=... [more]
A0A3M6VK79_9STRA1.440e-3067.90Sulfotransfer_1 domain-containing protein n=2 Tax=... [more]
A0A835ZEH8_9STRA2.390e-3067.07Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A484EF00_BRELC4.560e-3065.43Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A0P1A559_PLAHL5.400e-3067.90Fbox domain containing protein n=1 Tax=Plasmopara ... [more]
A0A225WWE7_9STRA5.720e-3066.67Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D0N7A7_PHYIT7.570e-3066.67Sulfotransfer_1 domain-containing protein n=19 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15663contigH-paniculata_contig15663:4685..5791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1e-24
Seed eggNOG ortholog164328.Phyra83791
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs3Q9PF@4776,KOG4157@1,KOG4157@2759
COG Functional cat.GO
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.7306018-CDS-H-paniculata_contig15663:4684..48551622929250.7306018-CDS-H-paniculata_contig15663:4684..4855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15663 4685..4855 -
1691480787.6017997-CDS-H-paniculata_contig15663:4684..48551691480787.6017997-CDS-H-paniculata_contig15663:4684..4855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15663 4685..4855 -
1622929250.7448473-CDS-H-paniculata_contig15663:5713..57911622929250.7448473-CDS-H-paniculata_contig15663:5713..5791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15663 5714..5791 -
1691480787.6103442-CDS-H-paniculata_contig15663:5713..57911691480787.6103442-CDS-H-paniculata_contig15663:5713..5791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15663 5714..5791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15663.3288.1prot_H-paniculata_contig15663.3288.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15663 4685..5791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15663.3288.1

>prot_H-paniculata_contig15663.3288.1 ID=prot_H-paniculata_contig15663.3288.1|Name=mRNA_H-paniculata_contig15663.3288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
VTGTITGADSRPDRPLSRRLSMYGMQGEGVLDERVKVVKTHFPERSGYRS
FEAEKAILLVRNPFDAISSYFNMCLTQSHDKR*
back to top

mRNA from alignment at H-paniculata_contig15663:4685..5791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15663.3288.1 ID=mRNA_H-paniculata_contig15663.3288.1|Name=mRNA_H-paniculata_contig15663.3288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-paniculata_contig15663:4685..5791- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGGGAACGATAACCGGCGCTGACAGCCGCCCAGACCGACCTCTCAG
CCGACGTTTGTCCATGTATGGCATGCAGGTATGTTGCATGGGGTGGATGT
CATAGCTGGCTCTCAAGTGTTATGCGTTAGCGGCTTTTTTTCGAACACTA
CGGTACAAGCACTGTAGTATACTCCTGAATTCATTTTCTCCTTCTGTAAA
GACGTCAAATTTAATGGTCGAAACAGAGGTAAGCGTCCATCCGTAAAAAT
CACCTTTGTTATGGAGATTGCGAAGTGAGAAAAGCGCGTGGTATTCTGCT
GTTCGTTGGAGGGGAGATAAGGCATTGTTACTGTAGGGAGTATTCGAAGA
TGAAAAATGTCCGCAGAATGTTCGCAGTGGAACTATTCACCAACGTACTG
GCCCGTCGGCGCCAAAGTGTTTCTGTATATTTTGCCCTCTACATATGAAA
CGCATAAAACTGTCATAACATACAATGTCTTGAACTAGAAAATGACGGGA
AAAATTCCAAATATCGCTGGCTCCAAAAATGTAGAAACGTTGCACCAACT
AGGCTAAATATATGTACTTTTCAATCACTAACATATGTCCTACCTTCTCC
CCAACGTTTTCATACGAACCAAAACAAAATAGAAAAGCATTCAACGCGTG
TAGAAAGGCCACAAAAATCCCGAAGATAAAATTTCATAGTCCTTCCAAAA
AGAAACCAAACCAAACCAAACCAAACAAAATGAAGCAAAACAAAAAGCGT
TCCACGTGTTGTTGGGGAAGGCCAATAGAACGATACCCGAACTTGAATTC
CGCAACACATTCCGAAACGATTTTCATACTCAACGAAAAACGAAGTATGC
GTTGCATATGTACTGTTGTGGGAAGTCCCCAAAAATTGCAAGTTTGATTG
ACTTGCTTTGATGTGCTGATCTTCCCCCATTCCCAGGGAGAGGGCGTGTT
GGACGAGCGTGTGAAGGTGGTAAAAACGCACTTCCCAGAACGGAGCGGAT
ACCGGTCGTTTGAGGCAGAAAAAGCTATCTTGTTGGTGCGAAACCCTTTT
GACGCCATTTCCTCGTACTTCAACATGTGCCTCACCCAGTCTCACGATAA
AAGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15663:4685..5791-

>mRNA_H-paniculata_contig15663.3288.1 ID=mRNA_H-paniculata_contig15663.3288.1|Name=mRNA_H-paniculata_contig15663.3288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig15663:4685..5791- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGGGAACGATAACCGGCGCTGACAGCCGCCCAGACCGACCTCTCAG
CCGACGTTTGTCCATGTATGGCATGCAGGTGACGGGAACGATAACCGGCG
CTGACAGCCGCCCAGACCGACCTCTCAGCCGACGTTTGTCCATGTATGGC
ATGCAGGGAGAGGGCGTGTTGGACGAGCGTGTGAAGGTGGTAAAAACGCA
CTTCCCAGAACGGAGCGGATACCGGTCGTTTGAGGCAGAAAAAGCTATCT
TGTTGGTGCGAAACCCTTTTGACGCCATTTCCTCGTACTTCAACATGTGC
CTCACCCAGTCTCACGATAAAAGGTGAGGAGAGGGCGTGTTGGACGAGCG
TGTGAAGGTGGTAAAAACGCACTTCCCAGAACGGAGCGGATACCGGTCGT
TTGAGGCAGAAAAAGCTATCTTGTTGGTGCGAAACCCTTTTGACGCCATT
TCCTCGTACTTCAACATGTGCCTCACCCAGTCTCACGATAAAAGGTGA
back to top