mRNA_H-paniculata_contig15659.3284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15659.3284.1
Unique NamemRNA_H-paniculata_contig15659.3284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15659.3284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15659contigH-paniculata_contig15659:1498..2053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size556
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15659.3284.1prot_H-paniculata_contig15659.3284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15659 1504..1824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.2529395-UTR-H-paniculata_contig15659:1497..15031622929250.2529395-UTR-H-paniculata_contig15659:1497..1503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15659 1498..1503 +
1691480787.3528247-UTR-H-paniculata_contig15659:1497..15031691480787.3528247-UTR-H-paniculata_contig15659:1497..1503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15659 1498..1503 +
1622929250.2904222-UTR-H-paniculata_contig15659:1824..20531622929250.2904222-UTR-H-paniculata_contig15659:1824..2053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15659 1825..2053 +
1691480787.3730872-UTR-H-paniculata_contig15659:1824..20531691480787.3730872-UTR-H-paniculata_contig15659:1824..2053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15659 1825..2053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.2681127-CDS-H-paniculata_contig15659:1503..18241622929250.2681127-CDS-H-paniculata_contig15659:1503..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15659 1504..1824 +
1691480787.3626134-CDS-H-paniculata_contig15659:1503..18241691480787.3626134-CDS-H-paniculata_contig15659:1503..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15659 1504..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15659.3284.1

>prot_H-paniculata_contig15659.3284.1 ID=prot_H-paniculata_contig15659.3284.1|Name=mRNA_H-paniculata_contig15659.3284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MLTILAKSERPGFRWSRVHLARVASCQLCIVLTLRSPPDFGRGFTVHHVL
HSRERGCLHCTASTATGRCSGWWWGWMGTLKKHASAGPAQICTTAMINNI
FQLHPD*
back to top

mRNA from alignment at H-paniculata_contig15659:1498..2053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15659.3284.1 ID=mRNA_H-paniculata_contig15659.3284.1|Name=mRNA_H-paniculata_contig15659.3284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig15659:1498..2053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGCATGCTGACAATACTGGCAAAGAGCGAAAGGCCGGGTTTTCGCTG
GTCGAGGGTACATTTGGCAAGGGTAGCCAGCTGCCAGCTATGCATCGTCC
TTACATTACGAAGCCCACCTGATTTTGGCCGTGGTTTTACAGTGCACCAT
GTGTTGCACAGTCGGGAGAGGGGATGCCTACATTGCACCGCGAGTACCGC
GACAGGGAGGTGCAGTGGGTGGTGGTGGGGATGGATGGGTACACTCAAGA
AGCATGCCAGTGCAGGACCCGCACAAATTTGCACCACAGCTATGATAAAC
AACATTTTTCAGTTACACCCTGATTGAACCGCTCATCCAGAGGTAAAATT
TAATACTAAATAATAACAAGTGGAGAAAAAATAAATAATTGCTCATCACG
TGCAAAACCAAACACGGGGACGTTTGGCGCGTTCCCGACCCCATCAGCCA
CTTCCACCAGCACCACCAGTTTAATACTAAATAATAGTAAGTGGAGAAAA
ATAAATAATTGCTCATCACGTGCAAAACCAAACACGGGGACGTTTGGCGC
GTTCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15659:1498..2053+

>mRNA_H-paniculata_contig15659.3284.1 ID=mRNA_H-paniculata_contig15659.3284.1|Name=mRNA_H-paniculata_contig15659.3284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig15659:1498..2053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGACAATACTGGCAAAGAGCGAAAGGCCGGGTTTTCGCTGGTCGAG
GGTACATTTGGCAAGGGTAGCCAGCTGCCAGCTATGCATCGTCCTTACAT
TACGAAGCCCACCTGATTTTGGCCGTGGTTTTACAGTGCACCATGTGTTG
CACAGTCGGGAGAGGGGATGCCTACATTGCACCGCGAGTACCGCGACAGG
GAGGTGCAGTGGGTGGTGGTGGGGATGGATGGGTACACTCAAGAAGCATG
CCAGTGCAGGACCCGCACAAATTTGCACCACAGCTATGATAAACAACATT
TTTCAGTTACACCCTGATTGAATGCTGACAATACTGGCAAAGAGCGAAAG
GCCGGGTTTTCGCTGGTCGAGGGTACATTTGGCAAGGGTAGCCAGCTGCC
AGCTATGCATCGTCCTTACATTACGAAGCCCACCTGATTTTGGCCGTGGT
TTTACAGTGCACCATGTGTTGCACAGTCGGGAGAGGGGATGCCTACATTG
CACCGCGAGTACCGCGACAGGGAGGTGCAGTGGGTGGTGGTGGGGATGGA
TGGGTACACTCAAGAAGCATGCCAGTGCAGGACCCGCACAAATTTGCACC
ACAGCTATGATAAACAACATTTTTCAGTTACACCCTGATTGA
back to top