mRNA_H-paniculata_contig15658.3283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15658.3283.1
Unique NamemRNA_H-paniculata_contig15658.3283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 4.500e-85
Identity = 147/183 (80.33%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            +V+  LKKL+++R+R +VK  G RCDGRRTDE      VRPI+IET LLPRTHGSCLFTRGDTQAIATVTLGGS SSQK DGITG  LK+FYLQYTFPPSCVGE GR GGP GRRE+GHG LAEKALSYT+P   DFPY+VRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG
Sbjct:  319 DVETALKKLYSKRLRTIVKETGRRCDGRRTDE------VRPISIETGLLPRTHGSCLFTRGDTQAIATVTLGGSGSSQKTDGITGMILKHFYLQYTFPPSCVGETGRIGGP-GRREVGHGALAEKALSYTVPPVNDFPYTVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 494
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.060e-69
Identity = 125/183 (68.31%), Postives = 148/183 (80.87%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            +V + LKKL+  R+RK+V   G R DGRR +E      VRPI+IETS+L RTHGS LFTRG+TQA+ATVTLGGS+ +QK +GI G+  K FYLQYTFPPSCVGEVGR G P GRRE+GHG LAE+AL+  +PD+  FPYS+RVESLITESCGSSSMASVCGG +A+MDAG+PV  PIAGVAMG
Sbjct:  245 DVCVALKKLWASRLRKMVHEGGRRSDGRRPNE------VRPISIETSVLARTHGSALFTRGETQALATVTLGGSSMAQKTEGIDGSQSKRFYLQYTFPPSCVGEVGRVGAP-GRREVGHGNLAERALAPVIPDDESFPYSIRVESLITESCGSSSMASVCGGCMALMDAGVPVKRPIAGVAMG 420
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A6U0G2M6_9STRA (Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0G2M6_9STRA)

HSP 1 Score: 220 bits (560), Expect = 8.770e-66
Identity = 120/182 (65.93%), Postives = 135/182 (74.18%), Query Frame = 1 
Query:    4 VQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            ++   K L  RRM ++ K  G RCDGR  DE      VR I IE  +LPR HGS LFTRG+TQAIAT TLG S   QK+D ITG   K FYLQYTFPPSCVGE GR G P GRRE+GHG LAE+AL  TLP E +FPYS+RVESLITES GSSSMASVCGGSLA+MDAG+PV  P+AG+AMG
Sbjct:  232 IKAAYKDLLCRRMFEMAKTTGKRCDGRSLDE------VRRIDIEAGILPRVHGSALFTRGETQAIATSTLGDSGMKQKIDKITGMEAKRFYLQYTFPPSCVGETGRVGAP-GRREVGHGNLAERALIPTLPSEEEFPYSIRVESLITESHGSSSMASVCGGSLALMDAGVPVKKPVAGIAMG 406
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A7R9VVZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVZ1_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.790e-65
Identity = 113/183 (61.75%), Postives = 135/183 (73.77%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            +++   K L  RRM  L K+  VRCDGR  D+      VRPI+ E  +LPRTHGS LFTRG+TQ++AT TLG +   QK+D I+G   K FYLQYTFPPSCVGE GR G P GRREIGHG LAE+AL + LP E  FPY++RVESLITES GS SMASVCGG LA+MDAG+P+  P+AG+AMG
Sbjct:   25 HIKGAFKDLLRRRMYALGKSSSVRCDGRDLDQ------VRPISAEAGVLPRTHGSALFTRGETQSLATATLGDAGMRQKIDKISGLDSKRFYLQYTFPPSCVGETGRVGAP-GRREIGHGNLAERALVHALPSEESFPYTIRVESLITESHGSPSMASVCGGCLALMDAGVPIERPVAGIAMG 200
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A7R9ZU64_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZU64_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.790e-64
Identity = 118/183 (64.48%), Postives = 138/183 (75.41%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            +++   K L  RRM +  K  G RCDGR  DE      +R +T+ET  LP+THGS LFTRG+TQAIAT TLG S   QK+D I GT  K FYLQYTFPPSCVGE GR+G P GRREIGHG LAE+AL  TLP E DFPYS+RVESLITES GSSSMASVCGG LA+MD+G+P+ +P+AG+AMG
Sbjct:  383 DIKSAFKDLLCRRMYERAKTTGKRCDGRELDE------IRHLTMETGFLPKTHGSALFTRGETQAIATTTLGDSGMRQKIDKIDGTEEKRFYLQYTFPPSCVGETGRTGAP-GRREIGHGNLAERALVPTLPSEEDFPYSIRVESLITESHGSSSMASVCGGCLALMDSGVPIKNPVAGIAMG 558
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A7S2A620_TRICV (Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A620_TRICV)

HSP 1 Score: 218 bits (554), Expect = 5.740e-64
Identity = 120/177 (67.80%), Postives = 132/177 (74.58%), Query Frame = 1 
Query:   19 KKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            K L  RRM  L K  G+RCDGRRTDE      +R I  E  +LPRTHGS LFTRGDTQAIAT TLG S   QK+D I G   K FYLQYTFPPSCVGE GR G P GRREIGHG LAE+AL   LP E DFPY++RVESLITES GSSSMASVCGG LA+MDAG+P+  P+AG+AMG
Sbjct:  340 KDLLCRRMFVLAKESGLRCDGRRTDE------IRIIESEAGILPRTHGSALFTRGDTQAIATATLGDSGMRQKIDRIDGQDSKRFYLQYTFPPSCVGETGRVGAP-GRREIGHGNLAERALVPALPSEDDFPYTIRVESLITESHGSSSMASVCGGCLALMDAGVPIKRPVAGIAMG 509
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A1E7FE01_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE01_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.370e-63
Identity = 116/183 (63.39%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            ++   LK L  RRM    K  G RCDGR   E      +R +T+E   LPRTHGS LFTRG+TQ +AT TLGGS   QK+D ITGT +K FYLQYTFPPSCVGE GR+G P GRRE+GHG LAE+AL  TLP E +FPY++RVE+L+TES GSSSMASVCGG LA+MDAGIP+ SP+AG+AMG
Sbjct:  363 DISSALKDLLCRRMFIRAKETGKRCDGRELTE------IRQLTMEAGFLPRTHGSALFTRGETQVVATSTLGGSGMRQKIDTITGTNVKRFYLQYTFPPSCVGETGRTGAP-GRREVGHGNLAERALIPTLPTEEEFPYTIRVEALVTESHGSSSMASVCGGCLALMDAGIPIKSPVAGIAMG 538
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A7S3VD11_9STRA (Polyribonucleotide nucleotidyltransferase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VD11_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.760e-62
Identity = 115/177 (64.97%), Postives = 137/177 (77.40%), Query Frame = 1 
Query:   19 KKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            K L +++M +  K  G+RCDGR+ DE      VR I I T++LP+ HGS LFTRG+TQAIAT TLG S   QK+D + G   K FYLQYTFPPSCVGE GR G  PGRRE+GHG LAE+ALS TLP E +FPY++RVESLITES GSSSMASVCGGSLA+MDAG+PV +P+AG+AMG
Sbjct:  489 KSLLSKKMYQKAKNTGIRCDGRKLDE------VRAIDIATTMLPKVHGSALFTRGETQAIATATLGDSGMKQKIDTVDGLNNKRFYLQYTFPPSCVGETGRVG-MPGRREVGHGNLAERALSATLPSEDEFPYTIRVESLITESNGSSSMASVCGGSLALMDAGVPVKAPVAGIAMG 658
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: PNP_CHLPN (Polyribonucleotide nucleotidyltransferase n=7 Tax=Chlamydia TaxID=810 RepID=PNP_CHLPN)

HSP 1 Score: 213 bits (543), Expect = 2.580e-62
Identity = 116/183 (63.39%), Postives = 136/183 (74.32%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            N++   K L +  MR L++ R +R DGR       L TVRPITIETS LPRTHGSCLFTRG+TQ +A  TLG  A +Q+ + + G  L  FYLQY FPP  VGEVGR G P GRREIGHG LAEKALS+ LPD   FPY++R+ES ITES GSSSMASVCGG LA+MDAG+P+SSPIAG+AMG
Sbjct:  292 NIKAACKTLKSDTMRALIRDREIRADGR------SLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSP-GRREIGHGKLAEKALSHALPDSATFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMG 467
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BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Match: A0A448ZGY4_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGY4_9STRA)

HSP 1 Score: 214 bits (545), Expect = 8.540e-62
Identity = 114/183 (62.30%), Postives = 138/183 (75.41%), Query Frame = 1 
Query:    1 NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLPRTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPSCVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG 549
            +++   K L  RRM    +  G RCDGR  DE      +R +T+ET  LP+THGS LFTRG+TQAIAT TLG S   QK+D I GT  K FYLQY+FPPSCVGE GR+G P GRREIGHG LAE+AL+ TLP E +FPY++RVESLITES GSSSMASVCGG LA+MD+G+P+ +P+AG+AMG
Sbjct:  367 DIKSAFKDLLCRRMFVRAQETGQRCDGRALDE------IRHLTMETGFLPKTHGSALFTRGETQAIATTTLGDSGMRQKIDKIDGTEEKRFYLQYSFPPSCVGETGRTGAP-GRREIGHGNLAERALAPTLPSEEEFPYTIRVESLITESHGSSSMASVCGGCLALMDSGVPIKNPVAGIAMG 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15658.3283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGU0_ECTSI4.500e-8580.33Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A835ZC49_9STRA1.060e-6968.31Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A6U0G2M6_9STRA8.770e-6665.93Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=... [more]
A0A7R9VVZ1_9STRA2.790e-6561.75Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7R9ZU64_9STRA2.790e-6464.48Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7S2A620_TRICV5.740e-6467.80Polynucleotide phosphorylase 1 (Fragment) n=1 Tax=... [more]
A0A1E7FE01_9STRA1.370e-6363.39Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7S3VD11_9STRA1.760e-6264.97Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
PNP_CHLPN2.580e-6263.39Polyribonucleotide nucleotidyltransferase n=7 Tax=... [more]
A0A448ZGY4_9STRA8.540e-6262.30Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15658contigH-paniculata_contig15658:173..4950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.4
Seed ortholog evalue6e-73
Seed eggNOG ortholog2880.D8LGU0
Preferred namePNP1
KEGG rclassRC02795
KEGG koko:K00962
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006109,GO:0006139,GO:0006396,GO:0006401,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008299,GO:0008408,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010322,GO:0010323,GO:0010467,GO:0010563,GO:0010565,GO:0010675,GO:0010677,GO:0015994,GO:0015995,GO:0016036,GO:0016070,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016122,GO:0016123,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019747,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031425,GO:0031667,GO:0031668,GO:0031669,GO:0033013,GO:0033014,GO:0033554,GO:0034641,GO:0034655,GO:0042214,GO:0042440,GO:0042594,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045827,GO:0045833,GO:0045912,GO:0045936,GO:0046148,GO:0046246,GO:0046483,GO:0046700,GO:0046890,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051186,GO:0051188,GO:0051716,GO:0062012,GO:0062014,GO:0065007,GO:0071071,GO:0071072,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903725,GO:1903726
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons5
Model size549
Cds size549
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15658.3283.1prot_H-paniculata_contig15658.3283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15658 173..4950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.1109934-CDS-H-paniculata_contig15658:172..2861622929250.1109934-CDS-H-paniculata_contig15658:172..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 173..286 +
1691480787.2956638-CDS-H-paniculata_contig15658:172..2861691480787.2956638-CDS-H-paniculata_contig15658:172..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 173..286 +
1622929250.1226857-CDS-H-paniculata_contig15658:1590..16681622929250.1226857-CDS-H-paniculata_contig15658:1590..1668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 1591..1668 +
1691480787.3056898-CDS-H-paniculata_contig15658:1590..16681691480787.3056898-CDS-H-paniculata_contig15658:1590..1668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 1591..1668 +
1622929250.1417537-CDS-H-paniculata_contig15658:2265..23851622929250.1417537-CDS-H-paniculata_contig15658:2265..2385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 2266..2385 +
1691480787.3150997-CDS-H-paniculata_contig15658:2265..23851691480787.3150997-CDS-H-paniculata_contig15658:2265..2385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 2266..2385 +
1622929250.177634-CDS-H-paniculata_contig15658:3073..31631622929250.177634-CDS-H-paniculata_contig15658:3073..3163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 3074..3163 +
1691480787.3253257-CDS-H-paniculata_contig15658:3073..31631691480787.3253257-CDS-H-paniculata_contig15658:3073..3163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 3074..3163 +
1622929250.196404-CDS-H-paniculata_contig15658:4803..49501622929250.196404-CDS-H-paniculata_contig15658:4803..4950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 4804..4950 +
1691480787.337556-CDS-H-paniculata_contig15658:4803..49501691480787.337556-CDS-H-paniculata_contig15658:4803..4950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15658 4804..4950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15658.3283.1

>prot_H-paniculata_contig15658.3283.1 ID=prot_H-paniculata_contig15658.3283.1|Name=mRNA_H-paniculata_contig15658.3283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
NVQITLKKLFNRRMRKLVKARGVRCDGRRTDEARGLLTVRPITIETSLLP
RTHGSCLFTRGDTQAIATVTLGGSASSQKLDGITGTTLKNFYLQYTFPPS
CVGEVGRSGGPPGRREIGHGTLAEKALSYTLPDERDFPYSVRVESLITES
CGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMG
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mRNA from alignment at H-paniculata_contig15658:173..4950+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15658.3283.1 ID=mRNA_H-paniculata_contig15658.3283.1|Name=mRNA_H-paniculata_contig15658.3283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4778bp|location=Sequence derived from alignment at H-paniculata_contig15658:173..4950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTGCAGATCACTCTCAAGAAGCTGTTCAACAGGCGCATGCGAAAGCT
CGTGAAGGCGCGGGGCGTGAGGTGTGACGGCCGAAGAACAGACGAGGCAC
GTGGACTACTTACTGTTTGTTCACTATTGATTGTAAATAAAAAATGTATA
TTAGAGTTGGGTACTGCCTAAGATAGCCATATACTACTCGTGCAATTATA
CCCGTTTTTTTCAGGGCTTTGTACGGGCGAACGGTATGGTACAGTACAGA
AGGGTCGAGGGTTCCTACGGTACGGTAGCGTACGGTCTGTTCCGTAAGGC
CTGTACCGTACCCTTACCATACCGTACCGTACGTGTGGATCATACCGTAT
AAAGCCCTGTTTTTTTTTGGCCCTGCATGTAGGTTGGAAATATTTGTGTA
CCAGTTAAATGGTACTATAAGATTTTTTTTTTCTGGCGCTGGTTTCCCTG
CCCTACCTAGCTGCTCCTTACCCTCGTGAGCATTCAAGTATGATTTTTTT
TTTTTGCGTCTTGTACTTAAGTCTATTCACTGTCAAACGTCGAATGTTAA
TTACTTAGCACTCACACACACAACTTTTAATACTTAGTGTGGAGAGCACG
TTACTGACTTTTCTGGGGTTCCTGAACTCCGATCCCCGATCCCCGATACA
ACGACCAATGGCTTTTTCTCCCCTTTTTTTCGGCAACAGGTTTTTAGCTG
TGTCCGACCCTGGATGGCCAATCAATCTACACGACAGAATAGAACCCGAA
TGCTTTTTGCGCACTACATCCCAAGACTTAAGGCCGATCCGCATAGAGCA
GGCGGCGTCCACTCGAGAGCCAGTCTCCCCCGGGATCATCGTTTTCTCAT
TTGGCATCGCCGGTAGTACTCGAACCTACGCGTGAAATCATAAAGGGTTT
TGAATCCGTTGGTTTCCCGGCCCTGGCAGCTCCCTACTCCAATGAGCATG
AAATCTATATATTTACCGTTCATACAAGTCACCTTAAAATGTCCTCTGAC
GTGATGCGTGACTAGAACTTGATACAGCGTCCAACATTAATTAATACACA
CATTTTTTTTTTTTCATTCGTACTGTCAATTTTTTTTTTTTCCTTGTTGA
ATATTTCTTTTATTTCGGAAATAAACAGGTGCGAATTTTCTGCTTGAAAA
CAGAGAGCCTCTACACCCTTTTTTTATCACATTTTTCCGATTTTTGCACG
GCGCAAAATCCGATTACCGTCTTACCTGGAAAAAGTGAAAAAAAAATGAA
GAAGAAAAACAAAACAAAAAAGAGAAGACAATAAAACAAAAGGAATATAA
ATTATTCTTTTAGTGATTGCCTTCAATCACCGCCACTGTGATGTTCTTAT
CCGTGTTACCCCCCCCCCCGCCCCCCCCTCCCCCCCTACCTCGATTCGTG
TTTTACGTCATGCGCCAGGTTCGACCAATCACCATCGAGACGTCCTTGCT
GCCGCGGACGCATGGGTCGTGCCTATTTACCCGAGGAGATACTCAGGTAC
ACAGTATTCATTTTTGTAGTTGCTCGTTTTGTGACGTTACAGTACGGGTC
CGCTGATAAGAAATTACCCGAGATCAATCAATTTTTACTAAACCCTTGAG
AAATACGGCCTAAGGAATGGGTCTCTAATTATGGTTCAGTATCAGCTCCT
GTATGGATGTAAGAATCAACGGTGCTCATGATTCTTGCCGAAATAGGGTT
TTGAATCTCACCCAAAGCAATATTCTCTCATCATCAGGCCCGTATTTTAT
ACTACTGCAGTTTTACCGAATCGCCATTTACCCTGCGCCCACGGGTCTGA
GGGATCGGGCTTCATGTGTGAATAATAATAGTATAATAATAGTGCTTAAC
AATAATAATAGTACTAACAACAATAATAATTAAAATCAGAATCAGAAATA
GAAATCAAAATAATCATAATAAGCAAAATAATCACACTAATCGTAGTAAT
CGTAATAGTCATAGTGTGGAGAGCACGTTCCTGACATTCCTGGGGTTCAT
GAACCCCGACGCCCTACACAACGACCAATGGCGTAACAATATGTATGTAT
GTATGTATGTATTATGTATTATGTATGTATGTGCAAAATTCAGGCTATCG
CGACAGTAACGCTCGGTGGATCAGCCTCTTCCCAGAAGCTAGACGGCATC
ACGGGCACCACGTTGAAGAACTTTTATCTTCAGTACACATTTCCTCCCAG
CTGCGTGGGCGAGGTAGGTACTGTTTCCTTATCTTAATGCCGTAAAAATT
GGTAGAAGCTGCAAAAGCGGGTAGCTTTTCGAACAGAATCACAGATTTGT
TTTGGAGCATAAACCCTCTGTAACGCCGACTTTGGTGTGATGATAACTGC
AGTAGAGTTGCGGAGTATCTCACACACGTGGGTTGTTGTGTCCTATTAAT
GACTAATGCTGTACAGAACTCTCAGGACTGTCCGGCTGGGGTGGTAGATG
TAGTCCTTGGCAATGGTCTGGTCTCTTGTAGTAGCTGGCTATAGCTGTCC
TGTTAGTGTCAGCCCTGGGTTGATGCAAGTCTGACAGATGAAGGGTAGCA
CGCTGCGGGCTTGCTGCTGTCAATTTCCATTTAGGCTACATTACATAACC
CCGGGGATTGCGGATGGACCGTCACTTTAGACATCGACTGTCACGTCCCG
CAATCAACACATCATAACATTAGAGGGGGGAAAAATAAATAAATCTCTCT
CTCTCTATATATATATATTCATGTATATATGGGCAGTCTTCCGTTCTTGT
TTCGTTTGTCTCCAAGTCTTGGCGGGAATAATATCACGGAAAGCAATACT
GGTTGCTTGGTTGGATATAGGGAACGGAATTTTCTGCAGGAGGAACATGA
TCACCGTCATTGTTGCCATTTTTAACTTTTTTTGTTTTTGCCCGGGGACA
GGTTGGACGAAGCGGGGGGCCGCCCGGGCGGCGGGAGATTGGACACGGCA
CTTTGGCTGAAAAGGCTTTGTCTTATACGCTTCCTGACGAGGTATGTATT
CCACAGTTAACACTGTGAAATAGATGGGGGAACGTGAAATATTGCAGTAG
CGATGGTACTGGTATCTGGTACTGGTACTGGTACTGGTACTGGTACTGGT
ACTGGGCAGTAGTACTGGTACTGGTACTGGGCAATAGTACTGGTACTGGG
CAATAGTACTAGTACTAGGCAGTAGTACTGGTACTGGTACTGGTACTGGT
ACTGGTACTGGTACTGGTACTGGTACTGGGCAATAGTACTGGTACTGGGC
AATAGTACTAGTACTAGGCAGTAGTACTGGTACTGGTACTGGTACTGGTA
CTGGTACTGGTACTGGTACTGGTACTGGGCAATAGTACTGGTACTGGGCA
ATAGTACTAGTACTAGGCAGTAGTACTGGTACTGGTACTGGTACTGGTAC
TGGTACTGGTACTGGTACTGGTACTGGGCAATAGTACTAGTACTAGGCAG
TAGTACTGGTACTAGGCAGTAGTACTGGTACTGGTACTGGTACTGGTACT
GGTACTGATACTGGGCAATAGTACTGGTACTGGGCAATAGTACTGGTACT
GGGCAATAGTACTGGTACTGGGCAATAGTACTGGTACTGGGCAATAGTAC
TGGTACTGGGCAATAGTACTGGTACTCATAACGGCTGAGGAATTGTTTTG
GAGATTTAGGAAGCTACTCGTATGTTGAGGCGTCAGGGACATCATGGTAA
AAACACCTCTTTAGGTAGGCTCTATACAAAGAGGCAACCCATTGATAAGC
AAAACAAAGCAGATGGTTGGTAATAATATCCACAAGAGCAACCAAAAATC
ACGGAGAAATATATTATGCATAATTTGTTCCTCATTTCTTTACCGTCCGG
CGGTTTTATCGGTGTGTACTGTTGAAAGCTTGTCGATGTATATTGAGTGC
TCTGCAGAAGAGTTTAATATATTTACAATCAGAGTACGTCAGACCTCGTT
AACATCTGTTTTTGTCAGATTCTTTTTGTTTCATATCTTTTCGCGTGTAT
TGACCATTAGACACGATTTCTTTTTTTTTAATTATCATGTTCATGTGAAT
ATATGACTAACCTGCTCGTAAGTACATACAATCGAAATTGGGTACGATGA
AGGCATTTTGTAAGCTTTTTATTTATAGCTCTACTACCCCGTCCGTAGTA
AATAGGGTTGATTTATGAACGAAGCTCCGGGTGAGTGAACGAGGTATTTT
AATTCCTCTGTTTTTTTTCATGTGAAAGCTGTTTCATGTTTCACGCGCGG
TTCACTCGCGAGTGATCCGTTTCTTCCCTCCTTCCCCTAGTTCGGTCATG
TTGTGGATGAGTCATTCCCCTCCTCCTGCCTCTATTACGGAGAAAGATAA
GAATCAGGAGCATTTTTTTTTGTTTTTTCGGGAACTGAATTTTGTTTTTC
CCCGTTGGTTGGTGTAAAGATTTCCGCTTCTAGCTGAAAATCAAAACACG
CTCTAAAAACACTTGCACGGGCATGCAGTAACCGATTGGTGCATATCGTA
TTGCATGAGTAGTTACACCTCAAAATGTCAATTTTCCAATTTGCTCCTGA
TTATTATGTTCCTCCGTAATAGTTGAGTCAGTTTGTGGGTGAGTCGTCCC
CCACCCTCCCTCCTCCTTGTTGTGTGTTTAGCGTGACTTCCCATACTCGG
TGCGAGTGGAGAGCCTGATTACTGAGAGCTGCGGGTCTAGCAGCATGGCC
AGCGTGTGTGGTGGAAGCTTAGCAATGATGGATGCCGGCATTCCGGTATC
CTCGCCGATCGCCGGGGTTGCCATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15658:173..4950+

>mRNA_H-paniculata_contig15658.3283.1 ID=mRNA_H-paniculata_contig15658.3283.1|Name=mRNA_H-paniculata_contig15658.3283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig15658:173..4950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTGCAGATCACTCTCAAGAAGCTGTTCAACAGGCGCATGCGAAAGCT
CGTGAAGGCGCGGGGCGTGAGGTGTGACGGCCGAAGAACAGACGAGGCAC
GTGGACTACTTACTAATGTGCAGATCACTCTCAAGAAGCTGTTCAACAGG
CGCATGCGAAAGCTCGTGAAGGCGCGGGGCGTGAGGTGTGACGGCCGAAG
AACAGACGAGGCACGTGGACTACTTACTGTTCGACCAATCACCATCGAGA
CGTCCTTGCTGCCGCGGACGCATGGGTCGTGCCTATTTACCCGAGGAGAT
ACTCAGGTTCGACCAATCACCATCGAGACGTCCTTGCTGCCGCGGACGCA
TGGGTCGTGCCTATTTACCCGAGGAGATACTCAGGCTATCGCGACAGTAA
CGCTCGGTGGATCAGCCTCTTCCCAGAAGCTAGACGGCATCACGGGCACC
ACGTTGAAGAACTTTTATCTTCAGTACACATTTCCTCCCAGCTGCGTGGG
CGAGGCTATCGCGACAGTAACGCTCGGTGGATCAGCCTCTTCCCAGAAGC
TAGACGGCATCACGGGCACCACGTTGAAGAACTTTTATCTTCAGTACACA
TTTCCTCCCAGCTGCGTGGGCGAGGTTGGACGAAGCGGGGGGCCGCCCGG
GCGGCGGGAGATTGGACACGGCACTTTGGCTGAAAAGGCTTTGTCTTATA
CGCTTCCTGACGAGGTTGGACGAAGCGGGGGGCCGCCCGGGCGGCGGGAG
ATTGGACACGGCACTTTGGCTGAAAAGGCTTTGTCTTATACGCTTCCTGA
CGAGCGTGACTTCCCATACTCGGTGCGAGTGGAGAGCCTGATTACTGAGA
GCTGCGGGTCTAGCAGCATGGCCAGCGTGTGTGGTGGAAGCTTAGCAATG
ATGGATGCCGGCATTCCGGTATCCTCGCCGATCGCCGGGGTTGCCATGGG
GCGTGACTTCCCATACTCGGTGCGAGTGGAGAGCCTGATTACTGAGAGCT
GCGGGTCTAGCAGCATGGCCAGCGTGTGTGGTGGAAGCTTAGCAATGATG
GATGCCGGCATTCCGGTATCCTCGCCGATCGCCGGGGTTGCCATGGGG
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