prot_H-paniculata_contig1557.3248.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1557.3248.1
Unique Nameprot_H-paniculata_contig1557.3248.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length132
Homology
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438BZM1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZM1_VITVI)

HSP 1 Score: 85.5 bits (210), Expect = 9.000e-17
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ   +   V KL KA+  L QA R
Sbjct:  477 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYKLRKALYGLKQAPR 605          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438BYD0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BYD0_VITVI)

HSP 1 Score: 85.5 bits (210), Expect = 9.130e-17
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ   +   V KL KA+  L QA R
Sbjct: 1018 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYKLRKALYGLKQAPR 1146          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438CA12_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CA12_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 2.030e-16
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ   +   V +L KA+  L QA R
Sbjct:  120 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQAPR 248          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438C6V0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C6V0_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 2.200e-16
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ   +   V +L KA+  L QA R
Sbjct:   49 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQAPR 177          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438EPS3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EPS3_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 2.230e-16
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ   +   V +L KA+  L QA R
Sbjct:  820 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQAPR 948          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438D6X5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D6X5_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 2.290e-16
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ   +   V +L KA+  L QA R
Sbjct: 1037 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGVLNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQAPR 1165          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438IZQ0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IZQ0_VITVI)

HSP 1 Score: 80.1 bits (196), Expect = 6.720e-15
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   + ++P     SIR LL  A     +L   D + AFL   +   VY+E P+ FQ   +   V +L KA+  L QA R
Sbjct:  636 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGAIVRNKARLVAQGFKQIEGIDFDKTFAPFARFESIRILLVVACIWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQAPR 764          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A5BXT6_VITVI (CCHC-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5BXT6_VITVI)

HSP 1 Score: 80.1 bits (196), Expect = 6.890e-15
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ--HFLGAVGKLNKAICELVQAGR 130
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   + ++P     SIR LL  A     +L   D + AFL   +   VY+E P+ FQ   +   V +L KA+  L QA R
Sbjct: 1022 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGAIVRNKARLVAQGFKQIEGIDFDKTFAPFARFESIRILLVVACIWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQAPR 1150          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438JGI6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JGI6_VITVI)

HSP 1 Score: 79.0 bits (193), Expect = 1.530e-14
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ 109
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ
Sbjct:  186 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQ 291          
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A438BVI5_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BVI5_VITVI)

HSP 1 Score: 79.0 bits (193), Expect = 1.770e-14
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 0
Query:    7 NGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQ 109
            N VW  + RPKD+ V+GT+ +++ K+ +NG +   K RLVAQ F+QIEG+   E ++P     SIR LLA A     +L   D + AFL   +   VY+E P+ FQ
Sbjct:  708 NDVWFLVPRPKDVNVIGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQ 813          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438BZM1_VITVI9.000e-1741.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BYD0_VITVI9.130e-1741.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CA12_VITVI2.030e-1640.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438C6V0_VITVI2.200e-1640.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EPS3_VITVI2.230e-1640.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438D6X5_VITVI2.290e-1640.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IZQ0_VITVI6.720e-1538.76Retrovirus-related Pol polyprotein from transposon... [more]
A5BXT6_VITVI6.890e-1538.76CCHC-type domain-containing protein n=2 Tax=Vitis ... [more]
A0A438JGI6_VITVI1.530e-1441.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BVI5_VITVI1.770e-1441.51Copia protein n=1 Tax=Vitis vinifera TaxID=29760 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..131
e-value: 1.1E-16
score: 61.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1557contigH-paniculata_contig1557:2558..2953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1557.3248.1mRNA_H-paniculata_contig1557.3248.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1557 2429..2959 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1557.3248.1 ID=prot_H-paniculata_contig1557.3248.1|Name=mRNA_H-paniculata_contig1557.3248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MRRMIDNGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDF
RQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADIV
YIEIPERFQHFLGAVGKLNKAICELVQAGRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2