mRNA_H-paniculata_contig15557.3242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15557.3242.1
Unique NamemRNA_H-paniculata_contig15557.3242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: D7FVU4_ECTSI (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU4_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 3.670e-138
Identity = 192/279 (68.82%), Postives = 231/279 (82.80%), Query Frame = 1
Query:    1 MADSGSKPLDYLLKRVSVLTRARRHGGKA-AAAASLVALFYLSVVLRQGRRPTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDNTLASGKGRGILDILIGKFYSLALTVGVQ 834
            M+  GS  LD +L +V  LT ARR GGK  AAAAS+VAL YL++V RQG+RP +  RR+ HN+R+LRALA VIDRPYYPSWLTP+ H+N  LG+ KRG  V+KTREL+R WDGG FAMDW NRD  QPDL AD PTLL+IHGLNGHS+EACVLY+M NA+ RGWR+VAMNHRGCGGT L SGWTYN A+TGDVR+AVSH+R RYP APL+A+G+SLGANLLVK+LGEEG++G RPLAGA+SVSNPWN EDNT+ASG+ +G++  ++GK YS AL  GV+
Sbjct:    1 MSSIGSGALDRILSQVRALTNARRTGGKEKAAAASVVALVYLALVFRQGKRPKLVCRRSGHNVRVLRALAGVIDRPYYPSWLTPNAHVNCLLGYAKRGITVSKTRELIRCWDGGTFAMDWRNRDRDQPDLPADAPTLLVIHGLNGHSEEACVLYSMENAHKRGWRAVAMNHRGCGGTHLASGWTYNGAFTGDVRLAVSHVRNRYPEAPLYAIGYSLGANLLVKYLGEEGRNGFRPLAGAVSVSNPWNFEDNTMASGRAKGLVAAVMGKVYSWALATGVK 279          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A835YM36_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM36_9STRA)

HSP 1 Score: 269 bits (687), Expect = 9.630e-85
Identity = 132/277 (47.65%), Postives = 185/277 (66.79%), Query Frame = 1
Query:   16 SKPLDYLLKRVSVLTRARRHGGKAAAAASLVALFYLSVVLRQGRRPTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDNTLASGKG---RGILDILIGKFYSLALTVGVQV 837
            S P   LL++   L R R+      A  S+V L +L    R+  RP + +  T+ N R++  L  ++ R Y PS  TP+GH NS LG+ K  P+ +KTREL+RTWDGG+FA+DW +    +P+L AD P LL+IHG+NGHS+E  V+  M  A+ARGWR+ A NHRGCGGT L+S W YN A+TGD+R+A++++  R+P AP+ A  +SLGANLLVK+LGEEG+HG  PLA A+ VSNPW LE   ++  +     G LD ++G+ Y L LT+G+++
Sbjct:    2 SSPSSSLLEQFRTLPRRRQ---AKYAVPSIVLLGWLLSWARRIGRPDVRHADTARNRRIVAMLQTLLARRYVPSIFTPNGHFNSGLGYVKAAPKFSKTRELIRTWDGGNFALDWRDTGPGKPNLPADAPILLVIHGINGHSEEVYVVNAMAMAHARGWRAAAFNHRGCGGTELSSPWGYNGAFTGDIRLAINNLHHRFPGAPVMAAAYSLGANLLVKYLGEEGRHGCAPLAAAVVVSNPWTLEAKHVSGEQAAPHHGPLDWIVGRAYGLLLTLGLRM 275          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A6H5KMM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM3_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.920e-68
Identity = 107/157 (68.15%), Postives = 125/157 (79.62%), Query Frame = 1
Query:    1 MADSGSKPLDYLLKRVSVLTRARRHGGKA-AAAASLVALFYLSVVLRQGRRPTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMV 468
            M+  GS  LD +L RV  LT ARR GGK  AAAAS+VAL YL+VV RQG+RP +  RR+ HN+R+LRALA V+DRPYYPSWLTP+ H+N  LG+ KRG  V+KTREL+R WDGG FAMDW NRD  QPDL AD PTLL+IHGLNGHS+EACVLY+MV
Sbjct:    1 MSGIGSGALDRILSRVRALTNARRTGGKEKAAAASVVALVYLAVVFRQGKRPKLVCRRSGHNVRVLRALAGVVDRPYYPSWLTPNAHVNCLLGYAKRGITVSKTRELIRCWDGGTFAMDWRNRDRDQPDLPADAPTLLVIHGLNGHSEEACVLYSMV 157          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A7S3UUK3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUK3_HETAK)

HSP 1 Score: 174 bits (441), Expect = 1.250e-47
Identity = 98/214 (45.79%), Postives = 132/214 (61.68%), Query Frame = 1
Query:  196 RALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRELVRT-WDGGHFAMDWSNRDASQPDLAAD----TPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDNTLASGKGRGILDILIGKFYSLALT 822
            +AL  +++ P+ P+    + + ++  G+ +R P +   RE++ T   G   A+DW   D +   L+A     TP LL+IHGLNGHS+E  + Y M+ A+ +GWR+V  NHRGCG TRL +   YN A T D+R A +HIRRR P AP++A GFSLGANLLVK+LGEEG     PLAGA +VSNPWN   N   +    G     +G  YSLALT
Sbjct:   93 KALEELLEEPFKPNMFCLNQNASTIAGYLRRLPSITTRREMISTDSQGAQIALDWMEYDEAL--LSAPWGPCTPILLLIHGLNGHSNETYIRYMMLLAHRQGWRAVGFNHRGCGETRLYTPKPYNGACTLDLRAACAHIRRRVPGAPVYAAGFSLGANLLVKYLGEEGA--AAPLAGAAAVSNPWNFSKNGSVT---HGTTLTALG--YSLALT 297          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A0G4I441_9ALVE (Hydrolase_4 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I441_9ALVE)

HSP 1 Score: 159 bits (401), Expect = 6.650e-42
Identity = 93/232 (40.09%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   61 RARRHGGKAAAAASLVALFYLSVVLRQGRRPTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGT-RLTSGWT--YNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLED 747
            R+R  G K     SL+ LF L++  R+  +    +  T  N  +LR +  ++ R +  S +  SG I+S L   K+ P++ + R+++ T+DG   A+DW     S PD   + P ++ IHGLNGHS+E  + +    A+ + W +VA+N RGCGG  +L S  +  Y+ A+T D+R AV  +R R+P +PLF VGFSLGANLLVK+LGEEG+     +  AIS  NPWN E+
Sbjct:   12 RSRLPGAKT----SLLLLFGLALFWRRRVKVDSFFMPTKKNKTLLRRINYLL-RGFSTSLVASSGFISSTLVMMKKAPKMQRERQVIETFDGTKVALDWLFD--SDPDCPPNNPVVMAIHGLNGHSEEGYMRHLQHQAHKQHWHTVALNLRGCGGVHKLPSPGSPFYSGAFTEDIRRAVEVVRSRFPDSPLFMVGFSLGANLLVKYLGEEGEEAVGNVTAAISAGNPWNFEN 236          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A0G4FY60_VITBC (Hydrolase_4 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FY60_VITBC)

HSP 1 Score: 155 bits (391), Expect = 2.390e-40
Identity = 93/228 (40.79%), Postives = 129/228 (56.58%), Query Frame = 1
Query:   91 AAASLVALFY-LSVVLRQGRRPTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRE---LVRTWDGGHFAMDWS-----NRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERP--LAGAISVSNPWNL 741
            AAA +VAL   L+V +R+  +       +  N R+L  L   +D  Y+P+W+  + HI + +GF K  P + K R+   L   +DGG   +DW        D  Q D    TP +L IHG+NGHSDE+ + + +  A      +VA+N RGC G  LTS +TY+AA T D+   V HI  R+P  PLF VGFSLG NL+VKFL EEG  G     +  A++V+NPW+L
Sbjct:   48 AAAKVVALLLGLAVFVRRKVKVVAICHPSELNRRILHQLRRYLDA-YFPAWVGFNAHIATGIGFGKSAPNLEKLRQRETLGPLYDGGTICLDWHFAPHPPTDPHQEDAPPPTPIILCIHGINGHSDESYLRHMLSYALENNMHAVALNLRGCAGQPLTSPFTYSAACTSDLHYTVHHIHERFPHNPLFLVGFSLGGNLMVKFLSEEGHPGGAAELITAAVAVANPWDL 274          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A6H5KG51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG51_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.710e-38
Identity = 97/282 (34.40%), Postives = 124/282 (43.97%), Query Frame = 1
Query:    1 MADSGSKPLDYLLKRVSVLTRARRHGGKA-AAAASLVALFYLSVVLRQGRRPTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRVAKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDNTLASGKGRGILDILIGKFYSLALTVGVQVGG 843
            M+  GS  LD +L RV  LT ARR G K  AAAAS+VAL YL+VV RQG+   +  RR+ HN+R+LRALA V+DRPYYPSWLTP+ H+N  LG+ KRG                                                                                                                         + VK+LGEEG++G RPLAGA+SVSNPWN EDNT+A G+ +G++  ++GK YSLAL  GV++ G
Sbjct:    1 MSSIGSGALDRILSRVRALTNARRTGRKEKAAAASVVALVYLAVVFRQGK---LVCRRSGHNVRVLRALAGVVDRPYYPSWLTPNAHVNCLLGYAKRG-------------------------------------------------------------------------------------------------------------------------ITVKYLGEEGRNGLRPLAGAVSVSNPWNFEDNTMAGGRAKGLVAAVMGKVYSLALATGVKIRG 158          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: UPI001C71FBD8 (embryogenesis-associated protein EMB8 isoform X2 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71FBD8)

HSP 1 Score: 150 bits (378), Expect = 2.270e-38
Identity = 91/238 (38.24%), Postives = 132/238 (55.46%), Query Frame = 1
Query:  154 TITYRRTSHNLRMLRALAAVIDRPYYPS-WLTPSGHINSA-LGFFKRGPRVAKTRELVRTWDGGHFAMDW-SNRDASQPDLAAD--------TPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDNTLASGKGRGILDILIGKFYSLALTVGVQ 834
            ++TY   SH    + +   V+   Y  + WL+ S HI +  L F  R P  +  R+L    DGG  A+DW  +RD S   L  D        TP ++++ GL   S  A + +   N    GW  V  NHRG GG  +TS   YNA +T D+R+ ++++ + YP APLFAVG S+GAN+LVK+LGE+G++   PLAGA+++ +PW+L          R I   L+ KFY  ALT+G+Q
Sbjct:  140 SLTYNSCSHIYDSVVSKCRVLRGRYLATPWLS-SPHIQTVFLNFHGRPPAFSYRRQLFHATDGGTIALDWLMSRDVSGGALLMDSSISKNDTTPLIVVVPGLTSDSASAYIKHLAFNMAKHGWNVVVSNHRGLGGVSITSDCFYNAGWTEDIRLVINYLHKEYPEAPLFAVGTSIGANVLVKYLGEDGEN--TPLAGAVALCSPWDLLIGD------RFISRRLVQKFYDRALTIGLQ 368          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: UPI000C1D6D0C (embryogenesis-associated protein EMB8 isoform X3 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6D0C)

HSP 1 Score: 149 bits (376), Expect = 2.390e-38
Identity = 94/245 (38.37%), Postives = 134/245 (54.69%), Query Frame = 1
Query:  142 GRRPTITYRRTSHNLRMLRALAAVIDRPYYPS-WLTPSGHINSA-LGFFKRGPRVAKTRELVRTWDGGHFAMDW------------SNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDNTLASGKGRGILDILIGKFYSLALTVGVQ 834
            G R  +TY  +S   R + +    +   Y  + WL+ S HI ++ L FF R PRV   R+L    DGG FA+DW             N+D S+ D    TP +++I GL   S    + +   N    GW  V  NHRG GG  +T+   YNA +TGDVR  + ++ + YP APLF VG S+GAN+LVK+LGE+G++   P+AGA +VS+PW+L   +      R I   L+ + Y  ALT+G+Q
Sbjct:   60 GSRVVLTYNSSSDLYRGVVSKCRTLHGRYLATPWLS-SPHIQTSFLNFFGRPPRVCYKRQLFHASDGGTFALDWLRHFDVSGVFTHRNQDISKDDT---TPIVVMIPGLTSDSASPYMKHLAFNTAKHGWNVVVSNHRGLGGVSVTTDCFYNAGWTGDVREVIKYLHQEYPEAPLFVVGTSIGANVLVKYLGEDGEN--VPVAGAAAVSSPWDLLIGS------RFIRRRLLQRLYDRALTIGLQ 292          
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Match: A0A6P6AB32_DURZI (embryogenesis-associated protein EMB8-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AB32_DURZI)

HSP 1 Score: 148 bits (373), Expect = 3.960e-38
Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 1
Query:  187 RMLRALAAVIDRPYYP-SWLTPSGHINSALG-FFKRGPRVAKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEACVLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIRRRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNL 741
            R L+AL   + +PY P   +T + H+ +    FF+  P+V   RE ++  DGG+ A+DW + D  +  L +D+P L+++ GL G S ++ V + +  A  +GWR V  N RGCGG+ +T+   Y+A++ GD R  V H+  RYP A L+AVG+SLGAN+LV++LG+E      PL+GA+S+ NP+NL
Sbjct:   54 RFLQALHTTLRQPYNPFPLITWNRHVETIFASFFRSVPQVRLRRECLQVKDGGYVALDWVSGDDRR--LPSDSPILILLPGLTGGSQDSYVRHMLTKAKCKGWRVVVFNSRGCGGSPVTTPQFYSASFLGDTREVVKHVGARYPEANLYAVGWSLGANILVRYLGQESH--TCPLSGAVSLCNPFNL 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15557.3242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU4_ECTSI3.670e-13868.82Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A835YM36_9STRA9.630e-8547.65Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A6H5KMM3_9PHAE2.920e-6868.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UUK3_HETAK1.250e-4745.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4I441_9ALVE6.650e-4240.09Hydrolase_4 domain-containing protein n=1 Tax=Chro... [more]
A0A0G4FY60_VITBC2.390e-4040.79Hydrolase_4 domain-containing protein n=2 Tax=Vitr... [more]
A0A6H5KG51_9PHAE1.710e-3834.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C71FBD82.270e-3838.24embryogenesis-associated protein EMB8 isoform X2 n... [more]
UPI000C1D6D0C2.390e-3838.37embryogenesis-associated protein EMB8 isoform X3 n... [more]
A0A6P6AB32_DURZI3.960e-3841.18embryogenesis-associated protein EMB8-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15557contigH-paniculata_contig15557:1692..5801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.9
Seed ortholog evalue1.2e-112
Seed eggNOG ortholog2880.D7FVU4
KEGG koko:K13696
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.poly(3-hydroxybutyrate) depolymerase activity
EggNOG OGsCOG0429@1,KOG1838@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size846
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15557.3242.1prot_H-paniculata_contig15557.3242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15557 1692..5801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.564038-CDS-H-paniculata_contig15557:1691..20221622929244.564038-CDS-H-paniculata_contig15557:1691..2022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 1692..2022 +
1691480784.967996-CDS-H-paniculata_contig15557:1691..20221691480784.967996-CDS-H-paniculata_contig15557:1691..2022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 1692..2022 +
1622929244.6146243-CDS-H-paniculata_contig15557:3433..35671622929244.6146243-CDS-H-paniculata_contig15557:3433..3567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 3434..3567 +
1691480784.976633-CDS-H-paniculata_contig15557:3433..35671691480784.976633-CDS-H-paniculata_contig15557:3433..3567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 3434..3567 +
1622929244.632176-CDS-H-paniculata_contig15557:4188..43281622929244.632176-CDS-H-paniculata_contig15557:4188..4328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 4189..4328 +
1691480784.9838479-CDS-H-paniculata_contig15557:4188..43281691480784.9838479-CDS-H-paniculata_contig15557:4188..4328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 4189..4328 +
1622929244.6438704-CDS-H-paniculata_contig15557:5560..58011622929244.6438704-CDS-H-paniculata_contig15557:5560..5801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 5561..5801 +
1691480784.9910433-CDS-H-paniculata_contig15557:5560..58011691480784.9910433-CDS-H-paniculata_contig15557:5560..5801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15557 5561..5801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15557.3242.1

>prot_H-paniculata_contig15557.3242.1 ID=prot_H-paniculata_contig15557.3242.1|Name=mRNA_H-paniculata_contig15557.3242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MADSGSKPLDYLLKRVSVLTRARRHGGKAAAAASLVALFYLSVVLRQGRR
PTITYRRTSHNLRMLRALAAVIDRPYYPSWLTPSGHINSALGFFKRGPRV
AKTRELVRTWDGGHFAMDWSNRDASQPDLAADTPTLLIIHGLNGHSDEAC
VLYTMVNANARGWRSVAMNHRGCGGTRLTSGWTYNAAYTGDVRMAVSHIR
RRYPAAPLFAVGFSLGANLLVKFLGEEGKHGERPLAGAISVSNPWNLEDN
TLASGKGRGILDILIGKFYSLALTVGVQVGG*
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mRNA from alignment at H-paniculata_contig15557:1692..5801+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15557.3242.1 ID=mRNA_H-paniculata_contig15557.3242.1|Name=mRNA_H-paniculata_contig15557.3242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4110bp|location=Sequence derived from alignment at H-paniculata_contig15557:1692..5801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGATAGCGGGAGCAAGCCTCTGGACTACCTTCTGAAACGCGTCTC CGTACTTACTCGCGCCCGTCGACATGGCGGAAAGGCAGCGGCAGCGGCTT CACTAGTAGCCCTCTTTTATTTATCAGTAGTCCTGCGGCAAGGTAGGCGT CCTACGATCACTTACAGACGCACTAGTCACAACTTGCGCATGCTGAGGGC ACTGGCCGCGGTCATCGATAGACCATACTACCCTTCTTGGCTAACACCTA GTGGACACATTAATTCCGCGCTGGGGTTCTTCAAGCGAGGTCCGCGTGTG GCCAAGACTCGTGAGCTGGTTCGCACGTGGGGTGAGCTTTCGCTTGATAT TTCGGAACAGTAAATATCGCCTAATCATTTCGATAATGATGGGGTTCGTC GATGAATAGTTGAAGAACGCGAGGTAGTGCGTCGCTGTTACCGAGAAAAC GTTCGATGGTGCTACCACATGCCGTTTGATTAGGTGGAGCCACGCCATTT TGATTATACACGTATCTGTTCTTGAGACTGAGTCTTCTCGAGAGCAAAAA AATATTCAGAAAATCAATTTTGGCTGAAGGACCTAGAGTTAGTCCGAGCT CTAGTCACACGTTCACCATCCCAAAAAATACGTTCTACAGTCTACCGAGT AGATATTGGAAAGTCAAGAAGATTACCAAACTAGATCCGACAGTTGGTGG GCACAAAAAATGGAAACATTCTCGATGATAATGCCTAAAATTGCATGATA TGGCGACCAAGGCACGGCCAAGGTACGACAAAGCTCCTTTGTGTTGAACA AGCGGCCAAAGGTGCCCAAAGGTAGCCGAAGGCGGTGAATTACGAGGTTT GACTACTGGAACGTAGCACAGTGGTTGTGACCGTCACTCTCCCAGTTATC GCAAGTTTAGCCCTGGCTGAGCTCCTCATCAACTGAGCTCCGTATAGTTG ATTTGGGTAGAAAAAGTTCAAAAGTGAGCGAGAACGCCTGTGTTTCGTAG GCAAGCGACCAAAACAGACAGGGAGTGCTAACATGCCGAATGACGCCTCG ATGATAGTAACTCTCGATCTAATTATTTGAAAGTTGTCGTGCTCGTCACT TTTGATCTCTTATTTTCCATAAGTAGGGGCACCCTCCCCTAGGACATGGG AAGTTTGGCGGGGAAACATGCGGAAAGACGGCGAATAGTCCGCGCACAGT ACAGTATTTAGTGCAGCGCACAAATTGATTATATGGTGCAGCAAACCGTA CCGTACAGTACAGGGATGTCATATCGTAAGCAGGCCCGTGCTTGTTGACA TTCGCTTCCCTGAGGCACAGCTACATGTGGTACGTGCAATTATCTCACGG ATACTTTGGGGCTAACAATGGGTTTGCAATTCCCACAGTAGGCAAAAGCG ATCGGCGTGCGTATCAACATGTTAACCCTTCGGGCGCCCGGTGATTGTTC CGGACAAGAAATTATTGTGGTTAAGTATTCTGCGAAGACCGGCGCCCAGG GGGTGAACTCGCTACTTTACCACTGTTTGTTGTGAATTCAACGGATTATG CGTTGGTCTATTGCCGCCTCGTGTTGTAGATTACCGCACAACAGCAATAC ATGGTGTTGCCTGTACAGTGGGGGTTGTAACGGTGCCGTCAGAGGCAAAC CACGAGCGCGCAGTATGTCACGTAGTGTAACCCCCCCCCACACACACACA TGCATACACACTCCCCCGTATACCATGATTCCGCCTTGGCAGATGGGGGG CATTTCGCGATGGACTGGAGCAATCGTGATGCGTCGCAGCCAGACCTTGC GGCGGACACTCCGACGTTGCTAATCATCCACGGGCTGAACGGGCATAGTG ATGAGGCATGTGTATTGTACACCATGGTGAGTATTGCACGGTGATCTTGC AATCCGTCGGGTAGGTTTCTTGGTGCGTACGGCGAAGTATAGCGCGGTGT CGTTTGCACCCCACGACTAGTACTCCTTTTGACTGTGTTGGATACTTGCG AGAGTTGTTGGGGTAACGCTCCAGCACGTCGATAATGTGATGATTCACTC GGAATATACACTCTTTTATTGTGTCAACAAAACACTTCCATTCACCTGTG ACATTGTGTTAACTGCCTTACCTGGGTGGTTGCACGTCGCCAAACAGGAC GGGAGTCGAGTGTGTGATGAGTCAGACCAGAGTCATAATTGCCCCCGCTT CACCAGTACCCCTCTGACTGAGGCGATGATCGACCTGTACTTGTCTCTTT TCAGAAGTTAATTCGAACAAAACAATTGCCATTTCCAGCCTACACGTCTA ATTAGCAAGAACAGGATTTATGCCAGTACTCCCTGACGGTGAGCAGCACG GAGACATAAAGCCACGTACGACGCCTCATTTCACAACAGTGATCCGATCA TCTCGTTGTTCTTACTCTTGATTTCCTCCTCAACACACGCTTGCTTTCCT CTCGCTCGCCCCCATCTTCGTCTCGTCTCTCTGTTTCTCTCCGTCAGGTA AATGCGAATGCACGAGGGTGGCGATCGGTGGCGATGAATCACCGCGGATG CGGCGGTACGCGACTCACCTCGGGCTGGACCTACAACGCTGCTTATACTG GAGACGTGCGCATGGCCGTCAGTCACATCCGTAGAAGGTCAGTGGCTGCA CCTTTTCGTTGTCAGAAACATATGAGGGCGAAACGTGCCCATACCCAAGG GTCTATGGTTTCGTTAGCCATCAGGAAAAGTAGCTGGCAAACGCCAAAGC CGCGCGAAAAGAATGATCGACGCGCTGGTTGACCACCAAAACTGTGGTTG TCCAACAGTACAGAACTTATGACAGTAATGGGCGTCCAGAGGAAGTTGGA CTTAGGTCATTTGAACAGAATCCTGTCGATTTATCAAGCTCCATATCCAA ATATTCAAGTTCATTCAGAATCCCCATCTACCTGGTGAGCATGCGCGGGT GGGACTGGATAAATCGTAGGTGTGATGATAGAGGAGTAAGCACTTTTTCA TACGCAACTCATTCAGTCTAACAGTGGGGATAGCTAGTCCCCAGACTATA GTTAGCACTCCGAAATCTGAGTACAATTTCCTTATGGTGAGATGTTCATT GAAGTCATGGTTTACTCTTTATTTGGTGCCCAACCGTTATGTTCCTCCGC CGCAGAAGTTGGTTCGTAAAGACATCTATTCGGGTGTACCTGTTTTTGAT AAAGATTTATGAAGGGTATCATGGGTAGTATTCGACATGTGAGATCGACC TGGGGTATATGGCATGCTCCCCCATATTAAATGCGAGTATTGATTTATAA CGTCCGTTGTATCAAGGTGCTGGTATGATGGTACGCTGTATGCATTGTGG CTTCTTATTCCGACGGTTCAAGTGTTTTTTGTCTTCGCGGTGTTTTCCAC CTTTTTCTCCGTGATCGTGCCATTGCACCCCCTCCCGCCCCCTTCCCAGC ATAAAAAGTGGTGATCTATGGAATCGTGTTGTGTCACACCGTATATGGTT ACTATTATCTGGGGTGGTCTATACGCGCAATACTACATTTTGGTCGAGTC CGCTGATTTCTCTGAGGCAGTCAGCAGGAAACCTCCCTCACGAAGCACAC ACAAACACACAAACAGGCAAACACACAAATAGGCAAACACACAAACAGGC AAACACACAAACAGGCAAACACACAAACAGGAAAAAGCACCTCGTCATAT GTTACTTTTCATTGGAATCTCGCCGCCGTCCTAACCCCGTGCATGGATCC CCACGCAACCAACCCTTTGTTCGGAATCTCCGACCTCCATACCCTCGTTC GGAACAACCTTCTACGTCCTTCCTCATAAAGGACTTATTTTCAATTTGCT CGGACCCGCGGATCATCAGGTATCCTGCCGCACCGCTGTTTGCGGTGGGC TTCTCCCTGGGCGCCAATCTGCTCGTGAAGTTCCTCGGCGAGGAGGGAAA GCACGGGGAGCGCCCCCTCGCAGGAGCAATCAGCGTCTCCAACCCGTGGA ACCTGGAGGACAATACCTTGGCGAGCGGTAAAGGGCGGGGGATATTGGAT ATCCTGATTGGGAAGTTCTACAGCTTGGCCCTCACCGTTGGGGTTCAGGT AGGTGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15557:1692..5801+

>mRNA_H-paniculata_contig15557.3242.1 ID=mRNA_H-paniculata_contig15557.3242.1|Name=mRNA_H-paniculata_contig15557.3242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig15557:1692..5801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGATAGCGGGAGCAAGCCTCTGGACTACCTTCTGAAACGCGTCTC
CGTACTTACTCGCGCCCGTCGACATGGCGGAAAGGCAGCGGCAGCGGCTT
CACTAGTAGCCCTCTTTTATTTATCAGTAGTCCTGCGGCAAGGTAGGCGT
CCTACGATCACTTACAGACGCACTAGTCACAACTTGCGCATGCTGAGGGC
ACTGGCCGCGGTCATCGATAGACCATACTACCCTTCTTGGCTAACACCTA
GTGGACACATTAATTCCGCGCTGGGGTTCTTCAAGCGAGGTCCGCGTGTG
GCCAAGACTCGTGAGCTGGTTCGCACGTGGGATGGCTGATAGCGGGAGCA
AGCCTCTGGACTACCTTCTGAAACGCGTCTCCGTACTTACTCGCGCCCGT
CGACATGGCGGAAAGGCAGCGGCAGCGGCTTCACTAGTAGCCCTCTTTTA
TTTATCAGTAGTCCTGCGGCAAGGTAGGCGTCCTACGATCACTTACAGAC
GCACTAGTCACAACTTGCGCATGCTGAGGGCACTGGCCGCGGTCATCGAT
AGACCATACTACCCTTCTTGGCTAACACCTAGTGGACACATTAATTCCGC
GCTGGGGTTCTTCAAGCGAGGTCCGCGTGTGGCCAAGACTCGTGAGCTGG
TTCGCACGTGGGATGGGGGGCATTTCGCGATGGACTGGAGCAATCGTGAT
GCGTCGCAGCCAGACCTTGCGGCGGACACTCCGACGTTGCTAATCATCCA
CGGGCTGAACGGGCATAGTGATGAGGCATGTGTATTGTACACCATGATGG
GGGGCATTTCGCGATGGACTGGAGCAATCGTGATGCGTCGCAGCCAGACC
TTGCGGCGGACACTCCGACGTTGCTAATCATCCACGGGCTGAACGGGCAT
AGTGATGAGGCATGTGTATTGTACACCATGGTAAATGCGAATGCACGAGG
GTGGCGATCGGTGGCGATGAATCACCGCGGATGCGGCGGTACGCGACTCA
CCTCGGGCTGGACCTACAACGCTGCTTATACTGGAGACGTGCGCATGGCC
GTCAGTCACATCCGTAGAAGGTAAATGCGAATGCACGAGGGTGGCGATCG
GTGGCGATGAATCACCGCGGATGCGGCGGTACGCGACTCACCTCGGGCTG
GACCTACAACGCTGCTTATACTGGAGACGTGCGCATGGCCGTCAGTCACA
TCCGTAGAAGGTATCCTGCCGCACCGCTGTTTGCGGTGGGCTTCTCCCTG
GGCGCCAATCTGCTCGTGAAGTTCCTCGGCGAGGAGGGAAAGCACGGGGA
GCGCCCCCTCGCAGGAGCAATCAGCGTCTCCAACCCGTGGAACCTGGAGG
ACAATACCTTGGCGAGCGGTAAAGGGCGGGGGATATTGGATATCCTGATT
GGGAAGTTCTACAGCTTGGCCCTCACCGTTGGGGTTCAGGTAGGTGGGTA
GGTATCCTGCCGCACCGCTGTTTGCGGTGGGCTTCTCCCTGGGCGCCAAT
CTGCTCGTGAAGTTCCTCGGCGAGGAGGGAAAGCACGGGGAGCGCCCCCT
CGCAGGAGCAATCAGCGTCTCCAACCCGTGGAACCTGGAGGACAATACCT
TGGCGAGCGGTAAAGGGCGGGGGATATTGGATATCCTGATTGGGAAGTTC
TACAGCTTGGCCCTCACCGTTGGGGTTCAGGTAGGTGGGTAG
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