mRNA_H-paniculata_contig15542.3240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15542.3240.1
Unique NamemRNA_H-paniculata_contig15542.3240.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A0B1PCE4_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1PCE4_UNCNE)

HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    7 SWISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGN-VSLAVLNVAYAPEL 213
            SWI DSG   H T     +S     K  +  A+G+ IP+ G+GNLS+ LRTS G  +S+ + NV Y PEL
Sbjct:  321 SWILDSGCFAHMTSRKELLSPLNHHKGVVTIANGRQIPVEGKGNLSLNLRTSTGGEISVTIRNVLYVPEL 390
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  234 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 307
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5KGB7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.130e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  326 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 399
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  385 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 458
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5JEW4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  187 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 260
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5J894_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J894_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 455
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  369 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 442
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.160e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 455
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.160e-7
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GAT H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  525 YVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 598
[Close]
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Match: A0A6H5JNW8_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.450e-7
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   10 WISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSITLRTSDGNVSLAVLNVAYAPELHYNLFS 231
            +++D+GA  H   ++     Y +    +R A+G+  PIVG G++++TL + DG   L +  VA+ P L YNL S
Sbjct:  250 YVADTGAATHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVS 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15542.3240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A0B1PCE4_UNCNE1.100e-744.29Uncharacterized protein n=1 Tax=Uncinula necator T... [more]
A0A6H5L142_9PHAE1.110e-736.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB7_9PHAE1.130e-736.49CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KX24_9PHAE1.150e-736.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEW4_9PHAE1.150e-736.49CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J894_9PHAE1.150e-736.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.150e-736.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.160e-736.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.160e-736.49Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JNW8_9PHAE5.450e-735.14CCHC-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15542contigH-paniculata_contig15542:703..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.4409547-CDS-H-paniculata_contig15542:702..9331622929244.4409547-CDS-H-paniculata_contig15542:702..933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15542 703..933 +
1691480784.9029984-CDS-H-paniculata_contig15542:702..9331691480784.9029984-CDS-H-paniculata_contig15542:702..933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15542 703..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15542.3240.1prot_H-paniculata_contig15542.3240.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15542 703..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15542.3240.1

>prot_H-paniculata_contig15542.3240.1 ID=prot_H-paniculata_contig15542.3240.1|Name=mRNA_H-paniculata_contig15542.3240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
EESWISDSGATGHATPSAAHMSSYRQVKETLRNASGQVIPIVGRGNLSIT
LRTSDGNVSLAVLNVAYAPELHYNLFS
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mRNA from alignment at H-paniculata_contig15542:703..933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15542.3240.1 ID=mRNA_H-paniculata_contig15542.3240.1|Name=mRNA_H-paniculata_contig15542.3240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig15542:703..933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAATCATGGATCAGTGATAGTGGGGCCACTGGTCATGCAACACCATC
TGCGGCTCACATGTCTAGCTATCGGCAAGTAAAGGAGACGCTGCGCAATG
CGTCAGGGCAGGTGATCCCGATTGTTGGTCGAGGAAACCTGAGCATAACA
CTTAGAACGAGTGATGGAAACGTGTCTCTCGCGGTTCTGAATGTCGCATA
TGCTCCTGAACTACACTACAATTTATTTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig15542:703..933+

>mRNA_H-paniculata_contig15542.3240.1 ID=mRNA_H-paniculata_contig15542.3240.1|Name=mRNA_H-paniculata_contig15542.3240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig15542:703..933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAATCATGGATCAGTGATAGTGGGGCCACTGGTCATGCAACACCATC
TGCGGCTCACATGTCTAGCTATCGGCAAGTAAAGGAGACGCTGCGCAATG
CGTCAGGGCAGGTGATCCCGATTGTTGGTCGAGGAAACCTGAGCATAACA
CTTAGAACGAGTGATGGAAACGTGTCTCTCGCGGTTCTGAATGTCGCATA
TGCTCCTGAACTACACTACAATTTATTTTCGGAAGAATCATGGATCAGTG
ATAGTGGGGCCACTGGTCATGCAACACCATCTGCGGCTCACATGTCTAGC
TATCGGCAAGTAAAGGAGACGCTGCGCAATGCGTCAGGGCAGGTGATCCC
GATTGTTGGTCGAGGAAACCTGAGCATAACACTTAGAACGAGTGATGGAA
ACGTGTCTCTCGCGGTTCTGAATGTCGCATATGCTCCTGAACTACACTAC
AATTTATTTTCG
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