mRNA_H-paniculata_contig15541.3239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15541.3239.1
Unique NamemRNA_H-paniculata_contig15541.3239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: D7G3D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D2_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.920e-48
Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:  571 MEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPAS 900
            ME G+D  NGLT  GLEQAR AG+ELKEV+L AGC PANT++++SPFSRAKETAEAI+ECLDC+LREERDLRER+FG+LDG++D ASY+KVWALDAVS+ H E GVEPA+
Sbjct:    1 MEEGVDPANGLTELGLEQARTAGKELKEVLLGAGCSPANTMVVTSPFSRAKETAEAIRECLDCDLREERDLRERYFGELDGREDHASYAKVWALDAVSARHGELGVEPAT 110
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: A0A7S3YGZ9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGZ9_HETAK)

HSP 1 Score: 154 bits (388), Expect = 3.480e-41
Identity = 97/209 (46.41%), Postives = 120/209 (57.42%), Query Frame = 1 
Query:  505 CTFFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPA----NTIILSSPFSRAKETAEAIKECLDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHRE--FGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENC 1113
            C  FL+RHGQS PN+ GKIVS ++ GI  ENGLT+ G  QA  AGR+L  ++L +         + +IL+SPFSRAK+TAE I++ L C L    +LRERWFG LDG  D   Y  +WA DA S    E  FG E   +VA R  +V   A     +    +            AVVLVSHGDALQ+LQ  L  R L  HR+LPHL NC
Sbjct:   22 CRLFLVRHGQSYPNVHGKIVSSLQEGIKDENGLTSTGRSQAEEAGRQLFHILLGSNADHLIGKDDILILTSPFSRAKQTAEIIQQSLGCGLEVRSELRERWFGSLDGASDK-HYQDIWAQDAESLTGAETVFGAETLESVAQRTKSVAALADPANPVAAHRYR-----------AVVLVSHGDALQILQTALLRRNLRAHRALPHLGNC 218
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: A0A6H5KCP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP6_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 6.190e-35
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:  928 VRRARKEVSIRQRFHTG-DGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRALRPPPEKEGLEE 1161
            +RR RKE+SIRQR+++G DGQPFPPGPSAVVLVSHGDALQLLQC LAGRP EQHRSLPHLENCGIR LRPPP +EG+ E
Sbjct:    1 MRRLRKEISIRQRYYSGADGQPFPPGPSAVVLVSHGDALQLLQCALAGRPAEQHRSLPHLENCGIRVLRPPPGEEGVRE 79
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: A0A3D1B2Y4_9BACT (Histidine phosphatase family protein n=1 Tax=Candidatus Staskawiczbacteria bacterium TaxID=2053617 RepID=A0A3D1B2Y4_9BACT)

HSP 1 Score: 115 bits (289), Expect = 6.100e-27
Identity = 80/209 (38.28%), Postives = 117/209 (55.98%), Query Frame = 1 
Query:  511 FFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCELREERD--LRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRALR 1131
            +F+IRHG+SK N+A  I+S  E G   +  LT +G EQ R + ++ K      G L + TII SSPFSR K TAE  KE LD + +   D  LRER+FGD + +  + +Y KVW +D  +  H+ F VE AS V  R  ++V       ++ +++++            ++LVSHGD LQ+LQ     +  ++HRSL HL    IR L+
Sbjct:   11 YFIIRHGESKANIAEIILSHSEHGTYEDFTLTQKGEEQVRDSAKKAK----MEGFLDSKTIIYSSPFSRCKRTAEIAKEVLDVKDKIHFDGRLRERYFGDFE-RTHSGNYQKVWDIDVNNPDHKNFNVESASEVRDRVLSLVD------NLEEKYNS----------KKILLVSHGDVLQILQTGFLNKSPKEHRSLSHLHVAEIRELK 198
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: A0A8J2WYG9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYG9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.310e-26
Identity = 88/213 (41.31%), Postives = 112/213 (52.58%), Query Frame = 1 
Query:  511 FFLIRHGQSKPNMAGKIVSGMEGGIDLE-------NGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRAL 1128
            ++ +RHG SK N AG IVS ++ G  LE        GL A G EQA AAG   K ++           ILSS FSR  ETA+ + + +  ++  E  LRER FGD +   + A Y  VW  DA+ + H  +GVE A AV  RAA  V+R    V   +  H            AV+LVSHGD LQ+LQ   AG  +  HRSLPHLE C +R L
Sbjct:   37 YYALRHGWSKANEAGIIVSRIDSGARLEYGAFSVWEGLHATGREQASAAGDAFKAIVRTRP-----VTILSSDFSRTFETAKIVAKAVHADVEAEPALRERDFGDFELGPNTA-YEAVWEQDAIDATHTAWGVEAACAVLERAAGAVQR----VEGAREGH------------AVLLVSHGDCLQILQTAFAGVDVSAHRSLPHLETCELRRL 227
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: UPI001EF0BD11 (histidine phosphatase family protein n=1 Tax=Halomonas campisalis TaxID=74661 RepID=UPI001EF0BD11)

HSP 1 Score: 112 bits (279), Expect = 1.700e-25
Identity = 82/208 (39.42%), Postives = 102/208 (49.04%), Query Frame = 1 
Query:  511 FFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRALRP 1134
            + L+RHG S+ N +G I+S  + G+D   GL+ +G EQ      E           PA T IL S F R  ETA  + E     L  E  LRER FG+L+G+ D+  Y  +WALDA    HR FGVE  +AVA R   V+                DG       + V+LVSHGD LQ+L   LA RPL QHR  P L    I  L P
Sbjct:   16 YLLMRHGHSQANASGVIISTPDRGLDA-FGLSPQGREQLDRVVAEWS--------WPAPTHILHSDFLRTAETAARVAEHFALPLSGEPGLRERDFGELEGQPDSR-YPDIWALDAADPTHRRFGVESVAAVARRMLGVI----------------DGLERETRHATVLLVSHGDPLQILLTALAQRPLSQHRDRPPLAPASITLLAP 197
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: UPI00166A5D18 (histidine phosphatase family protein n=1 Tax=Halomonas lutescens TaxID=1602943 RepID=UPI00166A5D18)

HSP 1 Score: 110 bits (276), Expect = 3.830e-25
Identity = 80/198 (40.40%), Postives = 105/198 (53.03%), Query Frame = 1 
Query:  511 FFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHL 1104
            + L+RHG S+ N  GKI+S  E       GLT+ GL +    G +    +L     PA T ++ S F R   TA  +       + +E  LRER FG+LDG+ D   Y  VWA DA S+ H ++ VEP S VAAR  AV+       ++ QRF TG+          V++VSHGD LQ+L   LAGRPL QHR  P L
Sbjct:   16 YLLMRHGHSQANAQGKIISSPE------RGLTSYGLSEQ---GEQQLVDVLAQWSWPAPTQVVHSDFLRTTNTAARVAAAFGLSMTQEVRLRERHFGELDGQADH-HYPDVWAFDAQSAEHAQWQVEPVSRVAARMCAVLE------ALEQRF-TGE---------TVLVVSHGDPLQILLAALAGRPLTQHREQPAL 187
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: F0Y5Y4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y4_AURAN)

HSP 1 Score: 110 bits (276), Expect = 4.940e-25
Identity = 85/207 (41.06%), Postives = 105/207 (50.72%), Query Frame = 1 
Query:  511 FFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRALR 1131
            F  +RHG S+ N AG IVS +E G     GL A+G  QA A    L  +   AG      ++L+S FSR  +TA  + E L  ++     LRER FGDLDG  +  +Y  VWA DA  + H    VE    V AR  A VR A            G+G+        V+LVSHGDALQ+LQ   A      HRSLPHLE C +R LR
Sbjct:   16 FVALRHGWSEANEAGIIVSRIESGRLPRYGLHAKGRAQAAAVAEPLAAL---AGAR--EVVVLASDFSRTLDTAAVVAERLGVDVAPTPALRERDFGDLDGGPND-TYEDVWARDAADAGHEWSRVESVERVLARTTAAVREADA---------AGEGR-------LVLLVSHGDALQILQTAFADVDPRTHRSLPHLETCELRPLR 200
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: A0A1H1ZZ96_9ACTN (Probable phosphoglycerate mutase n=2 Tax=Microlunatus soli TaxID=630515 RepID=A0A1H1ZZ96_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 1.120e-24
Identity = 81/208 (38.94%), Postives = 109/208 (52.40%), Query Frame = 1 
Query:  508 TFFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDC-ELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRAL 1128
            ++ ++RH QS+PN+AG IV     G+D  NGLT  G  QAR +              P   +I+SS FSR  ETAE ++E      +R +R LRER FG  DG   A++Y +VWA DA  +     GVEP  AV  R  +++       +  +R H G          A+VLVSHGD  Q+ Q   AG P+  HR+LP L N  +RAL
Sbjct:   30 SYTVMRHAQSRPNVAGLIVCRAPAGLDPANGLTELGRRQARDSASSWAAHRAGDATPP---VIISSDFSRTTETAEILREVTGAGPVRLDRRLRERDFGGFDGGP-ASAYDQVWARDAEDATAP--GVEPTGAVRDRVLSMI-------TDLEREHRG---------RAIVLVSHGDTSQITQAAFAGLPVHTHRTLPPLGNAELRAL 215
[Close]
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Match: A0A257TF54_9BACT (Uncharacterized protein n=1 Tax=Parcubacteria group bacterium 21-54-25 TaxID=1970248 RepID=A0A257TF54_9BACT)

HSP 1 Score: 109 bits (273), Expect = 1.570e-24
Identity = 83/213 (38.97%), Postives = 114/213 (53.52%), Query Frame = 1 
Query:  493 EPPSCTFFLIRHGQSKPNMAGKIVSGMEGGIDLENGLTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKECLDCEL-REERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPASAVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLLQCLLAGRPLEQHRSLPHLENCGIRAL 1128
            +P    +F +RHG S  N  G IVS    G+    GL+ +G ++ RAA +  KE     G L A+TI++SS F+RA+ETAE + + LD ++      LRER+FG  DG  +  +Y KVWA DA ++ H   GVE  +AV  RA  ++        + Q +    G+P       +VLVSHGD LQ+LQ   A    E HRSL  L    IR L
Sbjct:   23 QPLKNAYFAMRHGTSVANEEGVIVSDPTKGV-AGYGLSEKGRKEVRAAAQRAKET----GLLDAHTIVISSDFTRARETAEMLVDTLDLDMVTTTPKLRERFFGAWDGTHND-NYQKVWADDAHNATHTANGVESVAAVLDRATKLI------AELEQNYA---GKP-------IVLVSHGDTLQILQTAFADVSPETHRSLTPLHTAEIRKL 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15541.3239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D2_ECTSI2.920e-4874.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YGZ9_HETAK3.480e-4146.41Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KCP6_9PHAE6.190e-3582.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3D1B2Y4_9BACT6.100e-2738.28Histidine phosphatase family protein n=1 Tax=Candi... [more]
A0A8J2WYG9_9STRA1.310e-2641.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI001EF0BD111.700e-2539.42histidine phosphatase family protein n=1 Tax=Halom... [more]
UPI00166A5D183.830e-2540.40histidine phosphatase family protein n=1 Tax=Halom... [more]
F0Y5Y4_AURAN4.940e-2541.06Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1H1ZZ96_9ACTN1.120e-2438.94Probable phosphoglycerate mutase n=2 Tax=Microluna... [more]
A0A257TF54_9BACT1.570e-2438.97Uncharacterized protein n=1 Tax=Parcubacteria grou... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15541contigH-paniculata_contig15541:617..5072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog44056.XP_009035624.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Histidine phosphatase superfamily (branch 1)
EggNOG OGs28K5R@1,2QSKC@2759
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-21_002400.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1168
Cds size1164
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15541.3239.1prot_H-paniculata_contig15541.3239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15541 617..5070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.2952883-CDS-H-paniculata_contig15541:616..11421622929244.2952883-CDS-H-paniculata_contig15541:616..1142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 617..1142 +
1691480784.8529153-CDS-H-paniculata_contig15541:616..11421691480784.8529153-CDS-H-paniculata_contig15541:616..1142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 617..1142 +
1622929244.3125725-CDS-H-paniculata_contig15541:2287..24541622929244.3125725-CDS-H-paniculata_contig15541:2287..2454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 2288..2454 +
1691480784.8651307-CDS-H-paniculata_contig15541:2287..24541691480784.8651307-CDS-H-paniculata_contig15541:2287..2454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 2288..2454 +
1622929244.3263543-CDS-H-paniculata_contig15541:3114..31971622929244.3263543-CDS-H-paniculata_contig15541:3114..3197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 3115..3197 +
1691480784.8749797-CDS-H-paniculata_contig15541:3114..31971691480784.8749797-CDS-H-paniculata_contig15541:3114..3197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 3115..3197 +
1622929244.3374856-CDS-H-paniculata_contig15541:3889..39531622929244.3374856-CDS-H-paniculata_contig15541:3889..3953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 3890..3953 +
1691480784.8835857-CDS-H-paniculata_contig15541:3889..39531691480784.8835857-CDS-H-paniculata_contig15541:3889..3953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 3890..3953 +
1622929244.4057913-CDS-H-paniculata_contig15541:4746..50701622929244.4057913-CDS-H-paniculata_contig15541:4746..5070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 4747..5070 +
1691480784.8930821-CDS-H-paniculata_contig15541:4746..50701691480784.8930821-CDS-H-paniculata_contig15541:4746..5070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15541 4747..5070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15541.3239.1

>prot_H-paniculata_contig15541.3239.1 ID=prot_H-paniculata_contig15541.3239.1|Name=mRNA_H-paniculata_contig15541.3239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=388bp
AFLLLAACLCLLLTLQAIARAFHKACSSLVYHLLQSDSHVVEHPSGIKID
NSRNKTSIRLSYTAQDKTNRSVMMIGRAIYALGVHILVTTPSTASAGRLP
AGPMGDGISAAVAAVGDATSSRTTVAAATAAAEAVVDACVMEAETKDTLN
RRTATGQSHQGYAPEPPSCTFFLIRHGQSKPNMAGKIVSGMEGGIDLENG
LTAEGLEQARAAGRELKEVMLKAGCLPANTIILSSPFSRAKETAEAIKEC
LDCELREERDLRERWFGDLDGKDDAASYSKVWALDAVSSLHREFGVEPAS
AVAARAAAVVRRARKEVSIRQRFHTGDGQPFPPGPSAVVLVSHGDALQLL
QCLLAGRPLEQHRSLPHLENCGIRALRPPPEKEGLEER
back to top

mRNA from alignment at H-paniculata_contig15541:617..5072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15541.3239.1 ID=mRNA_H-paniculata_contig15541.3239.1|Name=mRNA_H-paniculata_contig15541.3239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4456bp|location=Sequence derived from alignment at H-paniculata_contig15541:617..5072+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTCCTGTTGTTGGCAGCTTGTCTATGTCTGTTGTTGACATTGCAAGC
TATTGCACGCGCATTCCATAAGGCCTGTAGTTCTCTAGTCTATCATCTCC
TTCAGAGCGATTCGCATGTTGTAGAACACCCCTCGGGAATTAAGATAGAT
AACTCGCGCAACAAAACCTCCATCAGGCTGTCGTACACGGCACAGGATAA
AACCAACCGATCTGTCATGATGATTGGAAGAGCAATCTATGCGCTCGGAG
TGCATATCCTCGTCACTACGCCTTCTACAGCCTCTGCGGGGAGGCTACCC
GCGGGTCCCATGGGAGATGGGATTTCTGCGGCCGTTGCTGCGGTAGGTGA
TGCTACTAGCAGTAGAACTACCGTAGCAGCAGCAACGGCCGCAGCAGAAG
CCGTGGTAGATGCCTGCGTTATGGAGGCCGAAACGAAAGATACCTTGAAC
AGGAGGACCGCTACCGGTCAAAGTCATCAAGGTTATGCGCCTGAGCCTCC
GAGCTGCACATTCTTCCTGATCCGACGTGAGTTCGAGCCCGATTGTGGTG
AATTTGCACTTCTTAAATGGGTGCTAAATGCGTAGAGTAAGTTCAGGTTG
AGGGAGATCGGAGCGGGGGGGGCGGAGAGGAATAATGCAGGACAAGGACG
CGTACTTGTGGAACCTAAACAGATCGAAACGCAACGTGCTTTATATTTTC
ATCTCTTCTTTTGTTTTGTCTCTAAATGTGTTGAAAAAACTACTGCTGCA
CAGTTATAGATAAATTTATCGCTGACGATAAATCTCCACATAAAGCTCCA
TAGGGTGGTGTTTTGACGAGTTTACACGAGCTGAACGGTGGTATGTTCAA
TATCTCGAGGCTTCCACGGGATTGGGCTTGTAGCGCGAGCGTAAAGACAA
GAGTTGAGGAGCTTTTATTATGATGTAGGCGTGGGACTGTGAGGGAGAGT
GACAGAACGGGGGCACACGGTCGTTCCCTCATGTCTCTCCTCCGACCATT
AACAAGAAATGGATCCGAACCAGATTCTACGTTGATATACACCGGATTCG
TGACAAGAAACAAGAAAATCAGCACAATATGAAACTCCGAGAAGGTTCTT
AGAATATTCGCAACCGTTACGCCAATACAGTCAGTGTCACACGCATACTC
AGGCCGAATGAAGTACCCAGATGGGAAAACCACCTAACATGCATATACAT
GGAAATGGCATACTCGACGCGTAGTAACCCCAGAGCACTTATTGCCATTG
TGTTGAGCCGACCTTCCTTTAGAACCCTGATCACCATCGAATTTTTAGCC
AGGGGTGGTGAACAGCAACCAAGAATTTAAAAAAGGCGAATTTTCGGTGT
TTTTTTTTCAACAATTTTCCCACTTTGGAAGCAAGAAGATTCTGCTGAAA
CGAAAAGGCCTTGCATTTTTAATTGGCGGCAAGCCGCCGATGTGTCCCTT
CGCGAATTGATGGAACAATGAGTTTTCTACCCCGAAATAATGCGGGACCG
ATGGTGTTTGGGGGTCCATTTATCTTCCTGGTGTGAATCTAAAATGCCAC
GACTTGCCCATCAGTGCCTGACTTGCCGCACTTTCTTACTCTATGCCAAC
AACCCATCTCAGCTCGGTGGTCTCGACTTATCGCGTGTGCGATTATACAT
GTTGCCTCTTATATTGATCAGACGGGCAGAGCAAGCCAAACATGGCCGGG
AAAATTGTTTCGGGGATGGAAGGTGGGATAGATCTGGAAAACGGCCTCAC
AGCGGAAGGCTTGGAGCAGGCGCGTGCGGCGGGCAGGGAGCTGAAGGAGG
TTATGCTGAAGGCGGGGTGCCTACCAGCGAACACCATTGTGAGTCACGCA
CATAATTCTGTGTACTGCTGTAGCTCCAGTAACGAGGGGGCTGCGCCTTT
TATGCTCAAGGTCTAGCGGGCGGCATACGAGTACAGGTGCTGGCTCCGCT
GCCCTGCAGGTATCTCTGCCATGTAGATCAGAGTAGTAGTGTGCACGAGG
GGGGCTGTTGTTGCAGTGCTGCTCTATCTTCAGAAATATACCCTGTTCCG
TAGGGCTGCAATTCGTCACAATACTTGACGGTAAAAAACTCGGTTTCGAT
GGTGACGTCACGTCACCCGCAGTGGTTGCTGTTTACTCATTGCCATGAGC
GTGCGTGCTATCTTGAACCAAACCCTACCTGGTTCGAAGCTAACGGGATG
CTCCTTGCCCCCCGTTCGTTCGTCATGAAGCGCTTGGTGTTTTGGTGCTG
CTCTGCGAGTAGGTATTGTATGCACTCGGCTGCTGTACTCCGGTATGCTT
CACTATAGCTGGTATACGGCAATTACACGGAGTGCAACATCCGTAGCATA
TTGAAGTAACGAATCAACCGTGGCCTCGTCCCATCGATAGTCATCATGAG
TAAATACGCGGCAAATGGTACGAAAAATTGCCTCCTGCATAGTAGAACAA
CGACGACAAAACCTCGAAGCACGTGCTCGTTCTGTTCGGTGCCACCAGAT
TTTGAGCTCACCCTTTTCTCGAGCGAAGGAGACCGCGGAAGCTATTAAGG
AGTGCTTGGACTGCGAGCTGCGAGAAGAGAGGTGATGCGTTATATGCATT
GGCCCTATTTCCCACAAACCGTACGGAGAATAATCGCGAACTACTGTGTA
AATTACATGGATGAGTGTTGGAATTTTGAATGCTGGCCAACAGCAAAGTC
CAACCATTTTCAAACAAGGAAAAAGACTGGTGACCCACTCTTTTCGGCGG
TCACACCCTCTACACCTGGGATATCTCGCCACGGAGAAATTAAATGTATA
TATATTGTCCATGCCTGTCCTGTCTTGTGATTGTCGTTGAGTCGTGTCAG
AGGTGGAACGAATTCACTAGCGTCTTACTATTTTTGACGATGCTAACGAC
ATCATTGTCGCTACGATAACTTGTTCCGGTTTTTAGTCTTGCTCTTCCCT
TCAATCCTGTTATTAGTGACACCCCATGACAGTTTTCGGGACCCCCGCCA
AAAAGCGAGCAAGAAACCATTGCAGGGACGTACGTGCTCAGACACCAAAC
TGCTGCGGGCCTCTGAGACTTGTGTTCTCTTGTGGCGCACGCAAATTCTG
AACCCGGCGTACAGTAGCCAACAGAGGACCCGCCTCAGCTGCCCTCAAGG
CATGGCAACCCTTATTATCCAGCAGCTGTATTTTCCAATCACCACTAGGG
GGTTAACGCCCTTGACCACTCTCCGTATCCTACTGTAACTACTGTCTCTT
TTGTTTTGTCACTTTTTTGTCAGGGATCTTCGTGAGCGCTGGTTCGGTGA
TCTAGATGGGAAAGACGACGCCGCGAGCTACTCCAAGGTGAGACATCTAG
CGTTGCCGAAGACCGGGAGGAGACTTGATCCTATCGTTCGTATTTTTGGA
TTCTCGTGTCACTCTGTGCTGATGGTGATCCGATGTAGTTCCCTTTTTGT
GCTCTCCGTACTGGTAATACGCGCATTTGAAGTCAGTGGCTTGCCCAGGT
GAGAATATGCCGCCTTGCTGGCGATATCAGGCCGTCGGGAAACATATGAT
CCCCCTCATGCCTCATGTATCTCCTTCCTCCTTAGGCGTTGCCATAACTT
GCCTTCAAAATAATCGTGAATTCGACAATATATCGAGATCAGCGCTATTT
AATAGTATTTGCAGCGTACCGCCAAACTGGATTGAACCACTGCGCTAAAC
TGAAGCCCCGCTAGTTGTAGATTTCCCCTGTCGCTTTCCTCTTAAGTTCG
CGTGCGCGAATGCACTCGCGGGATGAGTGGCAGGGGGGTAGAACACCTGA
CAGACGAATACATTACCCCGTTAATTCACCAAGCCTCATTCACTAGTCAA
AGCCACTTGCTACAGTTGGTAACTATATAAAGCAAGTATAAAATGTTCAT
TTTACCCTCGTTGTGGTTTTTGAGCTGACCTCTGTCTTATTTTAGTTGCG
TATATTTATCAGTGAAATTTTATCGAATCGTCCATATGTGAAAATGAAAC
ATAGGGTTTTGTCCTCGATGGCGGCTTTTAGCTGTATTTTTCCCTTCTTC
AGGGTGTTTGTTCTGTCCACAATGGGGACGAAAATAACGCACACCAATCG
CGGCACATTTCTCGTCTTGGAACGACTCAGGTATGGGCGCTAGACGCAGT
TAGCTCTCTTCACCGCGAGTTCGGGGTCGAACCAGCCAGCGCAGTTGCTG
CACGGGCGGCGGCGGTTGTGCGGAGGGCTCGGAAAGAGGTTTCCATCCGT
CAGCGTTTTCACACAGGGGACGGTCAGCCGTTTCCTCCAGGGCCAAGTGC
CGTGGTCCTCGTCAGCCACGGCGACGCTCTGCAGTTGCTGCAGTGCTTGC
TGGCCGGTCGCCCGCTGGAGCAACATCGATCTTTGCCACACCTAGAAAAT
TGCGGCATCCGCGCGCTGCGGCCGCCGCCGGAGAAGGAGGGACTCGAGGA
AAGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15541:617..5072+

>mRNA_H-paniculata_contig15541.3239.1 ID=mRNA_H-paniculata_contig15541.3239.1|Name=mRNA_H-paniculata_contig15541.3239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2328bp|location=Sequence derived from alignment at H-paniculata_contig15541:617..5072+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTCCTGTTGTTGGCAGCTTGTCTATGTCTGTTGTTGACATTGCAAGC
TATTGCACGCGCATTCCATAAGGCCTGTAGTTCTCTAGTCTATCATCTCC
TTCAGAGCGATTCGCATGTTGTAGAACACCCCTCGGGAATTAAGATAGAT
AACTCGCGCAACAAAACCTCCATCAGGCTGTCGTACACGGCACAGGATAA
AACCAACCGATCTGTCATGATGATTGGAAGAGCAATCTATGCGCTCGGAG
TGCATATCCTCGTCACTACGCCTTCTACAGCCTCTGCGGGGAGGCTACCC
GCGGGTCCCATGGGAGATGGGATTTCTGCGGCCGTTGCTGCGGTAGGTGA
TGCTACTAGCAGTAGAACTACCGTAGCAGCAGCAACGGCCGCAGCAGAAG
CCGTGGTAGATGCCTGCGTTATGGAGGCCGAAACGAAAGATACCTTGAAC
AGGAGGACCGCTACCGGTCAAAGTCATCAAGGTTATGCGCCTGAGCCTCC
GAGCTGCACATTCTTCCTGATCCGACGCGTTCCTGTTGTTGGCAGCTTGT
CTATGTCTGTTGTTGACATTGCAAGCTATTGCACGCGCATTCCATAAGGC
CTGTAGTTCTCTAGTCTATCATCTCCTTCAGAGCGATTCGCATGTTGTAG
AACACCCCTCGGGAATTAAGATAGATAACTCGCGCAACAAAACCTCCATC
AGGCTGTCGTACACGGCACAGGATAAAACCAACCGATCTGTCATGATGAT
TGGAAGAGCAATCTATGCGCTCGGAGTGCATATCCTCGTCACTACGCCTT
CTACAGCCTCTGCGGGGAGGCTACCCGCGGGTCCCATGGGAGATGGGATT
TCTGCGGCCGTTGCTGCGGTAGGTGATGCTACTAGCAGTAGAACTACCGT
AGCAGCAGCAACGGCCGCAGCAGAAGCCGTGGTAGATGCCTGCGTTATGG
AGGCCGAAACGAAAGATACCTTGAACAGGAGGACCGCTACCGGTCAAAGT
CATCAAGGTTATGCGCCTGAGCCTCCGAGCTGCACATTCTTCCTGATCCG
ACACGGGCAGAGCAAGCCAAACATGGCCGGGAAAATTGTTTCGGGGATGG
AAGGTGGGATAGATCTGGAAAACGGCCTCACAGCGGAAGGCTTGGAGCAG
GCGCGTGCGGCGGGCAGGGAGCTGAAGGAGGTTATGCTGAAGGCGGGGTG
CCTACCAGCGAACACCATTACGGGCAGAGCAAGCCAAACATGGCCGGGAA
AATTGTTTCGGGGATGGAAGGTGGGATAGATCTGGAAAACGGCCTCACAG
CGGAAGGCTTGGAGCAGGCGCGTGCGGCGGGCAGGGAGCTGAAGGAGGTT
ATGCTGAAGGCGGGGTGCCTACCAGCGAACACCATTATTTTGAGCTCACC
CTTTTCTCGAGCGAAGGAGACCGCGGAAGCTATTAAGGAGTGCTTGGACT
GCGAGCTGCGAGAAGAGAGATTTTGAGCTCACCCTTTTCTCGAGCGAAGG
AGACCGCGGAAGCTATTAAGGAGTGCTTGGACTGCGAGCTGCGAGAAGAG
AGGGATCTTCGTGAGCGCTGGTTCGGTGATCTAGATGGGAAAGACGACGC
CGCGAGCTACTCCAAGGGATCTTCGTGAGCGCTGGTTCGGTGATCTAGAT
GGGAAAGACGACGCCGCGAGCTACTCCAAGGTATGGGCGCTAGACGCAGT
TAGCTCTCTTCACCGCGAGTTCGGGGTCGAACCAGCCAGCGCAGTTGCTG
CACGGGCGGCGGCGGTTGTGCGGAGGGCTCGGAAAGAGGTTTCCATCCGT
CAGCGTTTTCACACAGGGGACGGTCAGCCGTTTCCTCCAGGGCCAAGTGC
CGTGGTCCTCGTCAGCCACGGCGACGCTCTGCAGTTGCTGCAGTGCTTGC
TGGCCGGTCGCCCGCTGGAGCAACATCGATCTTTGCCACACCTAGAAAAT
TGCGGCATCCGCGCGCTGCGGCCGCCGCCGGAGAAGGAGGGACTCGAGGA
AAGGGTATGGGCGCTAGACGCAGTTAGCTCTCTTCACCGCGAGTTCGGGG
TCGAACCAGCCAGCGCAGTTGCTGCACGGGCGGCGGCGGTTGTGCGGAGG
GCTCGGAAAGAGGTTTCCATCCGTCAGCGTTTTCACACAGGGGACGGTCA
GCCGTTTCCTCCAGGGCCAAGTGCCGTGGTCCTCGTCAGCCACGGCGACG
CTCTGCAGTTGCTGCAGTGCTTGCTGGCCGGTCGCCCGCTGGAGCAACAT
CGATCTTTGCCACACCTAGAAAATTGCGGCATCCGCGCGCTGCGGCCGCC
GCCGGAGAAGGAGGGACTCGAGGAAAGG
back to top