mRNA_H-paniculata_contig15540.3238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15540.3238.1
Unique NamemRNA_H-paniculata_contig15540.3238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A6H5KNN6_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN6_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 9.370e-37
Identity = 78/95 (82.11%), Postives = 81/95 (85.26%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARAAKAGSSAGKGVRERAMDRPAAVY 287
            RVV+K+E RPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRV SFPKLIQL GRLDLLLARA KA SS       RAMD P +VY
Sbjct:  249 RVVAKLEKRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVASFPKLIQLHGRLDLLLARA-KAESSRRDAAGARAMDTPESVY 342
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: D7FJM9_ECTSI (Utp12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.780e-35
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARAAKAGSSAGKGVRERAMDRPAAVY 287
            RVV+K+E RPNRAASLGRWIRALLSCHLGYLVSVPGLP+KLALLHQLIDRRV SFPKLIQL GRLDLLLARA KA SS       RAMD P +VY
Sbjct:  509 RVVAKLEKRPNRAASLGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLIQLHGRLDLLLARA-KAESSRRDAAGARAMDTPESVY 602
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A836CF23_9STRA (Dip2/Utp12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF23_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.420e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARA 218
            R+V+K E RP R A L  WIR++L  H GYL+S+P L  +L  LHQ+I+ R+ +F + ++L GRL  +LA A
Sbjct:   95 RLVAKFEKRPQRGAVLCTWIRSVLVRHTGYLLSIPDLSVRLGRLHQMIESRLSTFTRFLELDGRLKQILAHA 166
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A4S2MT68_9PEZI (NUC189-domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MT68_9PEZI)

HSP 1 Score: 71.6 bits (174), Expect = 3.140e-10
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARAAKAGSS--AGKGVRERAMDRPAAVY 287
            R+  ++  +P RA SLG W+R  L  H GYLV +P L ++L+ LHQ ++ R  + P+L+ LQGRLD+L ++         AGK  RE   +   A+Y
Sbjct:  538 RLAERLARKPGRAGSLGEWVRWTLVAHGGYLVGLPDLVKRLSSLHQTLNNRANALPRLLALQGRLDMLQSQLELRSEMRLAGKEPREVEKEAEGALY 634
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: D5GJY0_TUBMM (Utp12 domain-containing protein n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5GJY0_TUBMM)

HSP 1 Score: 67.4 bits (163), Expect = 5.490e-9
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARAAKAGSSAG 242
            R+  ++   P RA  LG W++ +   H GYLV++P L  +++ LHQ++  R  S PKL+ LQGRL++L A+     S AG
Sbjct:  171 RLAERIARHPGRARPLGTWVKWIAVAHGGYLVTLPDLVSQISELHQIVSARASSMPKLLSLQGRLEMLSAQMQFRSSPAG 250
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A1W0A0L7_9STRA (Utp12 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0L7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.280e-9
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 3 
Query:    6 VVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARAAKAGSSAGKGVRERAMDRPAAVY 287
            +V K E RP R A++  WI+ L+  H  YL++VPG+ +KL+ L+Q +D R++ FP+L +L GRL+L+L      G  AG+       + PA  +
Sbjct:  494 LVEKFEKRPTRGATMCVWIKYLMLNHTAYLMTVPGVVDKLSGLYQSLDARLKVFPQLHKLNGRLNLVL------GQIAGRATNVAVDETPAITF 581
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A7R9U6H1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6H1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.320e-9
Identity = 29/71 (40.85%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:    6 VVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARA 218
            VV+++E RP R   L  W++A+++ H  Y++SVP + EKLA++HQ+++ R  +   L+ + GRLDL+L++A
Sbjct:  475 VVNRLERRPARLPELCPWLQAVMTHHTSYVLSVPAVHEKLAVVHQVLEERTRTLHSLMSISGRLDLILSQA 545
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A3N4ISL0_ASCIM (NUC189-domain-containing protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4ISL0_ASCIM)

HSP 1 Score: 67.4 bits (163), Expect = 7.920e-9
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLLARAAKAGSSAGKG 248
            ++  ++  +P RA SLG W+R  L  H GYLVS+P L + L+ LH  +  R  + P+L+ LQGRLD+L A+     S  G G
Sbjct:  530 KLAERIARKPGRAGSLGTWVRWTLVAHGGYLVSLPNLVKTLSTLHGTLTTRAAALPRLLALQGRLDMLNAQLELRNSMRGAG 611
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A1Y2H0A8_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H0A8_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.020e-8
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:    6 VVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLLL 209
            V+ K + +PNR  +L  WI+A+L  H  YL++VP L +KL+  +Q +D RV  F K++ L GRLDL++
Sbjct:  535 VIHKFQQKPNRGEALLEWIKAVLLIHTAYLMTVPDLMKKLSNFYQTLDSRVSVFQKMLNLHGRLDLVM 602
[Close]
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Match: A0A3N4KS30_9PEZI (NUC189-domain-containing protein n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KS30_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-8
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 3 
Query:    3 RVVSKMESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESFPKLIQLQGRLDLL-----LARAAKAGSSAGKGVRER 260
            R+  ++  RP RA SLG W+R  L  H GYLVS+P L   LA L+  ++ R  + P+L+ LQGRLD+L     L +  +    AG+  +ER
Sbjct:  562 RLAERIARRPGRAGSLGVWVRWTLVAHGGYLVSLPDLMSTLAGLYSTLNSRAGALPRLLALQGRLDMLRAQVDLRKVMRGDEEAGESEKER 652
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15540.3238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNN6_9PHAE9.370e-3782.11Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FJM9_ECTSI5.780e-3581.05Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CF23_9STRA8.420e-1147.22Dip2/Utp12 family-domain-containing protein n=1 Ta... [more]
A0A4S2MT68_9PEZI3.140e-1039.18NUC189-domain-containing protein n=1 Tax=Ascodesmi... [more]
D5GJY0_TUBMM5.490e-940.00Utp12 domain-containing protein n=1 Tax=Tuber mela... [more]
A0A1W0A0L7_9STRA7.280e-938.30Utp12 domain-containing protein n=1 Tax=Thraustoth... [more]
A0A7R9U6H1_9STRA7.320e-940.85Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A3N4ISL0_ASCIM7.920e-941.46NUC189-domain-containing protein n=1 Tax=Ascobolus... [more]
A0A1Y2H0A8_9FUNG1.020e-844.12WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A3N4KS30_9PEZI1.070e-840.66NUC189-domain-containing protein n=3 Tax=Morchella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15540contigH-paniculata_contig15540:1142..5915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue3.9e-30
Seed eggNOG ortholog2880.D7FJM9
Preferred nameWDR43
KEGG rclassRC00097,RC00609
KEGG koko:K01966,ko:K14546
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,ko03008,map00280,map00630,map00640,map01100,map01120,map01130,map01200,map03008
KEGG ModuleM00373,M00741
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0033554,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000234,GO:2001141
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsKOG4547@1,KOG4547@2759
EC2.1.3.15,6.4.1.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Exons2
Model size904
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15540.3238.1prot_H-paniculata_contig15540.3238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15540 1159..5481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.1981351-UTR-H-paniculata_contig15540:1141..11581622929244.1981351-UTR-H-paniculata_contig15540:1141..1158Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15540 1142..1158 +
1691480784.8068566-UTR-H-paniculata_contig15540:1141..11581691480784.8068566-UTR-H-paniculata_contig15540:1141..1158Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15540 1142..1158 +
1622929244.2514687-UTR-H-paniculata_contig15540:5481..59151622929244.2514687-UTR-H-paniculata_contig15540:5481..5915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15540 5482..5915 +
1691480784.8425632-UTR-H-paniculata_contig15540:5481..59151691480784.8425632-UTR-H-paniculata_contig15540:5481..5915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15540 5482..5915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.2173555-CDS-H-paniculata_contig15540:1158..14861622929244.2173555-CDS-H-paniculata_contig15540:1158..1486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15540 1159..1486 +
1691480784.8217638-CDS-H-paniculata_contig15540:1158..14861691480784.8217638-CDS-H-paniculata_contig15540:1158..1486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15540 1159..1486 +
1622929244.234655-CDS-H-paniculata_contig15540:5356..54811622929244.234655-CDS-H-paniculata_contig15540:5356..5481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15540 5357..5481 +
1691480784.8322725-CDS-H-paniculata_contig15540:5356..54811691480784.8322725-CDS-H-paniculata_contig15540:5356..5481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15540 5357..5481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15540.3238.1

>prot_H-paniculata_contig15540.3238.1 ID=prot_H-paniculata_contig15540.3238.1|Name=mRNA_H-paniculata_contig15540.3238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MESRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVESF
PKLIQLQGRLDLLLARAAKAGSSAGKGVRERAMDRPAAVYEEEEDEDDEE
EDGSDESDEEDDDEANGGQQAMEEDGDSNDDDDDDDDDDDDDVEEGEEAE
*
back to top

mRNA from alignment at H-paniculata_contig15540:1142..5915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15540.3238.1 ID=mRNA_H-paniculata_contig15540.3238.1|Name=mRNA_H-paniculata_contig15540.3238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4774bp|location=Sequence derived from alignment at H-paniculata_contig15540:1142..5915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGAGTGGTGAGCAAGATGGAAAGCCGGCCAAACCGAGCCGCTTCCCTG
GGTCGATGGATACGCGCGCTGTTGTCATGTCACCTGGGATATCTAGTCTC
CGTCCCAGGTTTGCCAGAAAAGCTGGCGTTATTGCACCAGCTAATAGACC
GCCGGGTTGAGTCATTCCCCAAGCTAATTCAGTTACAAGGCCGCCTGGAC
TTGCTGCTTGCTCGCGCCGCCAAAGCTGGCTCTAGCGCGGGCAAGGGGGT
CCGGGAGAGGGCAATGGATCGCCCCGCGGCTGTCTACGAAGAGGAGGAGG
ATGAGGATGATGAGGAGGAGGATGGGAGTGATGAAAGTGATGAAGGTAAG
CATCCTTCCAGCAATTAACAGGTTTTGTGTCCCCTTGTTTGGTTGGTTTG
TGGGTTGGATCAGTTACATACACACTTTCGGAAGAAGAAAACTCGTTTTA
TACTTGATTATCGAAAATCTCAGTAATGAAGCACCTTGAAAACCTCAGAA
AGAGGCACAAAAACTTGAGTAACGAAGCTTGGATGACTTGGTCTCGGCTG
TTGGCGCTTATTGGGTGTATTTGTCAAGTGCAACATGAACCACCATGTAC
TCGTCTTGTCACAGTTTGCATGTGATCAGCGAGTAATTCACCGTCAACAC
CGTTCAGTCGGCGTCACAGCAAATGAAGGCACACTCGGTGTAGCCGATAG
ACGTGTTAGGACTGGGGGGCTGAGAGAGGTAATATTTCAGCCTTGCATTT
AAGTTTTGTTCTCTTGTCCTTGCTGTTGGAGTTTGCGTGTTTGCGTGTTT
GCGTGTCACCTTACCGGTGTACAATAAAAAACAAGGTGTGAAGATGAAAC
TCGTTATGTTTGTTTCGTAACATGAAAACGAAAAAATGGACGAACAAGAA
TCGCAGCAAGCCAGAGCACGAGACACCCATATATCATAAGAGAGGAGCGA
TGGGGAACATAGTAGACAGGCAGTCAGTCTACTGTAAGGGCTGGGGTCAT
GAGGTACTAGTCTTTTTGCACCTCTCGGTGCCAAGTTTGTGTTGTTCTTT
GCTTCTGTTGTTTTATCATGTTCCGAATTTGGGTGCGGCTGCCTTGACAG
CACATCAGAACAGGAGCTGACCTAAAATGAACAGGACTTATGCAACACAT
GCCAGCACCAGACAACCAGGCCGCATCGACGCAAACAGCTGGCAGACGGT
TTACTGGCTACGGGTCTAGCAGATTTTTTCTCTCTCTTCTCTTGCGCGAA
TAGCTGTTAATAGATGTTAATAGGTGTTGCGTGGCGAATTTGGTCTATGT
TGGATGTTGGAAGCTGCAGCCACCCCGAAATGCACATGTAGCTTTCATTT
AAGAGCGGGGTACCACACATGACAAAAGCAGTACGGAGGAAGCCCAGACA
CTTTACACGCCACAGTAGAGACAGGCAACAAGCCGCGACGCCACTGCCAC
ACGGCCTCGGGGCTATTAGAGAAGTCTTGTGCTCTTCGGGCTATTGAAAA
ATTGGGCTTACCTTGAGTAGTCTATTGCATCTGTTACATTCTGTATGTAC
TGACTGCACCGTCCCTCTGTGTTGTCGTTTTGGGTTGTGGTGGTGCAGTA
CATTCCTCGGTTGCTGAAGGTTTTCAAGCGAGGATAAAGTGCCTAGACAG
CTGAATAAAGTGCCTAGACGGCAATACTTGAGAATATGAAATGCAAAATT
TGCTCTTCGACTCTAAGGTTAGGCTTGCTGGGGTTTTATCTCAGCAGCGA
AGAGAATCGTTACTGGCTTTTGTTTTGTACAGTGCCGAAGTATTTTTGCG
TGGTTTCCGAAACTGTCGTACAGGTAGTAATCCAGCAGCATCAATCGAGA
GTACTAAGCGACCGTGCATAACTTGCGTTTTGTTGACGGTTATTTTTTTT
TTTTCCAATAATTTGCGTTATTCTCTTTTTATGTACCATATACTCTGTGT
ACTTTTTCCAAATCATCCTCCACCGATAGTGTAAATGGTGTCCGTCTATC
CTGCTGGTGAAGCTGTCCTTGGCAGTTTGGCTAGTGTTGTGTGTTCGCTT
TCTTGTCATGGGTGTGTGTAGACTTTTGCATTCCCCTCTGTGTTTGAGGA
AATGTTTACACCGCATTTTCTGGATAATGACGGTAAGGTCACATGTAATA
CACTCACTCCTGGCTTCATTTTTTATGTTGACTATGTGACCTTTTTTAGT
TTGGATTTTATATATGTTCTTATCATGTGTCCTCCAGCCAATTCAATTTC
GGTAGGGTTAAAAATGATATACCAAAATTGCGCACTACGGATGTCTTCGT
TGCGAGCTTCAACACAATCGTTGACCTTTTTTTCTCGGGCGTGTACTTCA
GTTGTAAAATTGGGTCCAGCAGCTTCCTCTGGCGACGTCGCTGCCCACAC
TGAAAACAGTAATATCAAACGGCAGTCTGTTGCTGGAAACAAGCAAAACA
ATGTAATTTTGATCAAAGAGTCGTGAGGTTGTACCAACATGCAAGAGAGA
CCGTCCGTTCTTAGTAGCGAGGATCGCCCGTTAGTCCCTCCAATTTCGAC
TGGGCTGAAGGAAGAAAACTGATCCTGTACACGAAGACAGTAATCTGGGT
TGTAGGTTGCTCCGCAAAGTTCTCTTGTAGTCAGCATGTGTCATGTTCCA
AACGGAAAAAGGAGATCTTTGATCGCTTTCATTTCAAGGTCACATTTATC
ATCGTTGCCCGGCCTCATGAGGGTTATATCTGAGGGGCTCATCATCAATG
TGACCCCATGCTTCCTAATTTTTGTTGTCGCAAGCACCACCATACTTGGT
CACTTGATTCAGTAAGTTGTATCCTACAAGCCTTGTCGCTATAAAGTCAT
TCCCGAGGTCTGTACTGATTGTCTGCAGGTGTCTCAAGCTACTACTACTT
GCCCGGGAGCTTAAGGTGCGCTTGCACAACAGGCACCGAAAAATTTGCCC
ACAAACCAATCTGACGTCTAACGCCCCTTGACCGGATTGACGGTGATGGT
ACATCCTCGTATTTCCTGGGTACTAGTTTAGTAGCAAAATGGAAATTGCA
GGATGAAGATCGTTTGGCGCAATTCCGTCTTGAAGATTTCGACTATGAAG
AAATTTTCATCTCGGACTGATGGACGAACGAAGGGAAAAAAAGAGGACCA
GAGCGAAACGAACTTTCTTCATGCATGACTCCGTTTTGTGCAAACATTCT
TAACAGGAAAAGTTATATCTTCACGGTTGAAAAAGACGAGTCGAGCTATA
TCTCTATTTATATATATATATAATATATATATGTATTGATTTTTCATCAG
GTGTACGTGATGTTCAGACTATGACTTCGTATCTTTGCTCTATTCTCGAG
GCAATGGGTGTTGAAGTGTTGGCACACCGGGTGTTATGCAACGTGATCAA
TATATGTACCCCTGGAGTATATCAGGATGGTGGGCGCATTGAGTTCAGTG
TGCCCGCTTATGAACATGAAAAAACTGATTTACTACAAGTAAGCCACGAC
TATGTCTGTGCAGTTCGTGCGCGCATGACGAATCGTTTTCAGGAATAACC
GAAGTATAGATGGAGAAATCTGTTCCGAAACGACGATGGTGACGACAACC
ACCACCTCCTTGTATTAAATAATAACACTACCACATGAAGCTCATATTGC
AAAAAAACAGAAAAAAAACATGAGGATTATGAGTTTTTGGCGGTTTTTGT
GCCCATCGTTATTTACTTGAGCAAAATTAAAATGGAATAATTCTGTTTCA
AATGGGAAACATGTTTTGGATCATTCTGTGTTGAACGTTTTCTCCTGGGG
AGGTGCTGTGTTTTGTCCTAATCTTCGGGTGAAATCTGTACGGAAAGTAA
TAGCGCGCTTGTGTTGATTGTTGATAGATTATCGCGTGCTGTTTTTTGGC
TGTGGAAGGAGTTGCCCGTATGGTTGCTATCCACCCGGTTGATTTGGGTT
TAAGGGCGTTCCGTGGCTTGAACTGGCGTTGTCTGGATGGTTTATGTCCC
CAAGTTGACCTGATTGACAATGGGGAGTCATCCCGCCAGCGCATCTGTGT
GTGGGTGTGGAATTATTCGTTTCATCGATGTAGGAAGTTAACTGTATTTT
GCGATCGTTTTCCACTGATTATATTAGGTGAAATGTGTTCTTCGTGTGTG
AGGCCCATTCTCTGATCGCAATGCGTTCGATACTTACGTTTGTTTTGTTT
TGCGTTTCGTTACAGAGGATGATGATGAGGCTAATGGCGGCCAACAAGCC
ATGGAGGAAGATGGTGATAGCAATGACGACGACGATGACGACGATGACGA
CGATGATGATGATGTAGAGGAAGGGGAGGAGGCAGAGTAGCGAGACTGTG
CCTTGTGTAGTTGTTGAGTCGGCGCCTCTTGAGGTCACTTTGGTGCATTA
TTTGACAAAATCATTATGTTGCTCGGCGCCTAAAATCGGCAGCTGCACCG
GGAATAGGAACAGGGCGACGTTGGATACAAACGGACCCATGAGGCATGAT
GTAGAGATTGTGGATCTGTTGGCTGGGTGGAGACGTCATCATAATATGTG
AACGCGGTAGAGCTGTGCATCGGGTGTCCAAAATGAAAATATTTAAATGT
TGGCCCTCGAAATCGACTGATGCATGACCGGTAGATATATCGGTCATGTA
TCGGCGCGAGCGAAGCAAGTCAGCAGCGCAAAGTACCAGCGGACCTCGTG
AGCGCGAGACGGAACGGGAGGGGCTAGGTAAGGGGGTTCACGGGTGGCGC
CGCCGGAGGCAGAGTCAATAAGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15540:1142..5915+

>mRNA_H-paniculata_contig15540.3238.1 ID=mRNA_H-paniculata_contig15540.3238.1|Name=mRNA_H-paniculata_contig15540.3238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig15540:1142..5915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAGCCGGCCAAACCGAGCCGCTTCCCTGGGTCGATGGATACGCGC
GCTGTTGTCATGTCACCTGGGATATCTAGTCTCCGTCCCAGGTTTGCCAG
AAAAGCTGGCGTTATTGCACCAGCTAATAGACCGCCGGGTTGAGTCATTC
CCCAAGCTAATTCAGTTACAAGGCCGCCTGGACTTGCTGCTTGCTCGCGC
CGCCAAAGCTGGCTCTAGCGCGGGCAAGGGGGTCCGGGAGAGGGCAATGG
ATCGCCCCGCGGCTGTCTACGAAGAGGAGGAGGATGAGGATGATGAGGAG
GAGGATGGGAGTGATGAAAGTGATGAAGATGGAAAGCCGGCCAAACCGAG
CCGCTTCCCTGGGTCGATGGATACGCGCGCTGTTGTCATGTCACCTGGGA
TATCTAGTCTCCGTCCCAGGTTTGCCAGAAAAGCTGGCGTTATTGCACCA
GCTAATAGACCGCCGGGTTGAGTCATTCCCCAAGCTAATTCAGTTACAAG
GCCGCCTGGACTTGCTGCTTGCTCGCGCCGCCAAAGCTGGCTCTAGCGCG
GGCAAGGGGGTCCGGGAGAGGGCAATGGATCGCCCCGCGGCTGTCTACGA
AGAGGAGGAGGATGAGGATGATGAGGAGGAGGATGGGAGTGATGAAAGTG
ATGAAGAGGATGATGATGAGGCTAATGGCGGCCAACAAGCCATGGAGGAA
GATGGTGATAGCAATGACGACGACGATGACGACGATGACGACGATGATGA
TGATGTAGAGGAAGGGGAGGAGGCAGAGTAGAGGATGATGATGAGGCTAA
TGGCGGCCAACAAGCCATGGAGGAAGATGGTGATAGCAATGACGACGACG
ATGACGACGATGACGACGATGATGATGATGTAGAGGAAGGGGAGGAGGCA
GAGTAG
back to top