mRNA_H-paniculata_contig1553.3232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1553.3232.1
Unique NamemRNA_H-paniculata_contig1553.3232.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1553.3232.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.380e-29
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:    3 MGAKDLSTGLVRRELVRKSRRERGLGERPPGGDGDVWPAVDDPLEELTELVWPSSELPAFEVHFCVGEAAMVISF 227
            +GAKDLS GL RRE VR+ RRERGL ERPPGG+G VWP VDDP+EELTELVWPSSELPA EV+  V EAA ++SF
Sbjct:  288 VGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSF 362
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BLAST of mRNA_H-paniculata_contig1553.3232.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.400e-29
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:    3 MGAKDLSTGLVRRELVRKSRRERGLGERPPGGDGDVWPAVDDPLEELTELVWPSSELPAFEVHFCVGEAAMVISF 227
            +GAKDLS GL RRE VR+ RRERGL ERPPGG+G VWP VDDP+EELTELVWPSSELPA EV+  V EAA ++SF
Sbjct: 1196 VGAKDLSRGLSRRERVRQFRRERGLNERPPGGEGAVWPPVDDPMEELTELVWPSSELPALEVNMSVDEAACLLSF 1270
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1553.3232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI4.380e-2974.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE4.400e-2974.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1553contigH-paniculata_contig1553:21713..22513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1553.3232.1prot_H-paniculata_contig1553.3232.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1553 21715..22513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.5687883-UTR-H-paniculata_contig1553:21712..217141622929243.5687883-UTR-H-paniculata_contig1553:21712..21714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1553 21713..21714 +
1691480784.5428243-UTR-H-paniculata_contig1553:21712..217141691480784.5428243-UTR-H-paniculata_contig1553:21712..21714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1553 21713..21714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.5837705-CDS-H-paniculata_contig1553:21714..219181622929243.5837705-CDS-H-paniculata_contig1553:21714..21918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 21715..21918 +
1691480784.5530064-CDS-H-paniculata_contig1553:21714..219181691480784.5530064-CDS-H-paniculata_contig1553:21714..21918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 21715..21918 +
1622929243.596314-CDS-H-paniculata_contig1553:22492..225131622929243.596314-CDS-H-paniculata_contig1553:22492..22513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 22493..22513 +
1691480784.5619922-CDS-H-paniculata_contig1553:22492..225131691480784.5619922-CDS-H-paniculata_contig1553:22492..22513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 22493..22513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1553.3232.1

>prot_H-paniculata_contig1553.3232.1 ID=prot_H-paniculata_contig1553.3232.1|Name=mRNA_H-paniculata_contig1553.3232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MGAKDLSTGLVRRELVRKSRRERGLGERPPGGDGDVWPAVDDPLEELTEL
VWPSSELPAFEVHFCVGEAAMVISF
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mRNA from alignment at H-paniculata_contig1553:21713..22513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1553.3232.1 ID=mRNA_H-paniculata_contig1553.3232.1|Name=mRNA_H-paniculata_contig1553.3232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=801bp|location=Sequence derived from alignment at H-paniculata_contig1553:21713..22513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATGGGAGCCAAAGATCTATCTACCGGACTTGTGCGGCGGGAACTAGTG
CGAAAGTCTCGCCGAGAACGAGGACTGGGCGAAAGACCTCCTGGCGGAGA
TGGCGACGTTTGGCCTGCTGTGGATGACCCCTTAGAAGAGCTGACGGAGC
TCGTCTGGCCCAGCTCGGAGCTGCCAGCCTTCGAAGTGCATTTCTGCGTT
GGCGAGGTGTGCACTGTCAGCGAATCTACTCGTGCTTGACCTTTCATTGC
ATTGCCGAAAATTGTGACAACGACGCTGCCAAGTTAAAAAAAAACTGTAC
AACTCGAGACCACGCACGACGATTTTACAATGACAACGGGCTTCGATGGA
AATCTCTGTGTGCACCAGGTAAAATAATATTTCGGGGATCAGTGCTTGAT
TCTCGTTGCCTGAAGGCGCTGTTTATAAGACGAGCTGCAGCAATAAATGT
AAGGTGCTGTTTACTATGTTAAAGCTGCCTACCATATCAATGAACTATCC
AGGTTACAATGGCGCAAAGTGTATTCAACGGTAGCCATTTGTGCTATACC
ATGTGCTGATGTGCGTTATGGGAAATACTTGGATTTTTTGGTCGCTTCAA
CTCGTGCGGTTCTACTTTTAAGGGTTAGGTCTGGATCGTTCTGCCAGGTA
TACCCGGTTTCGCAACTCGTTCTGTTGGCATGACGCGTTTGGCATTGAGA
ATTGTACGTGGATTGCCGGGAGAGAAACGCTTTTCACAAGATGAGGTGGA
AAACGTCCCCATATTCGTTGTTCGCGTCAGGCTGCAATGGTCATCTCTTT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig1553:21713..22513+

>mRNA_H-paniculata_contig1553.3232.1 ID=mRNA_H-paniculata_contig1553.3232.1|Name=mRNA_H-paniculata_contig1553.3232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig1553:21713..22513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGCCAAAGATCTATCTACCGGACTTGTGCGGCGGGAACTAGTGCG
AAAGTCTCGCCGAGAACGAGGACTGGGCGAAAGACCTCCTGGCGGAGATG
GCGACGTTTGGCCTGCTGTGGATGACCCCTTAGAAGAGCTGACGGAGCTC
GTCTGGCCCAGCTCGGAGCTGCCAGCCTTCGAAGTGCATTTCTGCGTTGG
CGAGATGGGAGCCAAAGATCTATCTACCGGACTTGTGCGGCGGGAACTAG
TGCGAAAGTCTCGCCGAGAACGAGGACTGGGCGAAAGACCTCCTGGCGGA
GATGGCGACGTTTGGCCTGCTGTGGATGACCCCTTAGAAGAGCTGACGGA
GCTCGTCTGGCCCAGCTCGGAGCTGCCAGCCTTCGAAGTGCATTTCTGCG
TTGGCGAGGCTGCAATGGTCATCTCTTTCGCTGCAATGGTCATCTCTTTC
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