mRNA_H-paniculata_contig1553.3231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1553.3231.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI) HSP 1 Score: 192 bits (489), Expect = 1.520e-47 Identity = 135/388 (34.79%), Postives = 165/388 (42.53%), Query Frame = 3
Query: 3 EGFVLEDVELRRDFLAELLGLPIDVPHAFVRKAVVHVPWYTLMLGSFVAKLEGVTIVMRGDVGAMTASSTNPRSQEQDSAGNDHRVYSADSVAQFVDGMSGGLDSGARMGATHSKSETSRQHPLPRWLKWLLRRLKVQLMDVTIRYESVGMCPLQGAPPSAVEVTLGSLEVRPVSLQGASAWFKGQIKAQRRGHQYREELMLQGLAVRIEPLDDPAASSGTINSNQKVFLLEPTSVSAQAFVVSRLPPRSTPLRPGMRSGRVGTAHATIRAISLSGEAWRTIRPSFLEDLPNLMRTWTQGDRTSLTNEPVTVNATEDSMTLAWGVVEELMRLADMHSGAGVGFGDMGVGNDYSDEE---------------EGDSEQWYDAFGSQEES 1121
EG VL+DVELRRDFL+ELLGLP+DVPHAFVR+AV+H+PWYTL+LG + RQ P+PRWLKW+LRRLKV+L DVT+RYESVGMCPLQGA P+AVEVTLGSLEV+PVSLQGASAWFK Q++A+ + QYRE G++ + NEPVT+NATED+M L WGV EE++RLADM+SGA +G ++WYDAFGS+ ES
Sbjct: 202 EGVVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLLLGP----------------------------------------------------------------------KAGRQRPMPRWLKWVLRRLKVKLADVTLRYESVGMCPLQGAAPAAVEVTLGSLEVQPVSLQGASAWFKRQVQAEHKSLQYRE-----------------------------------------------------------------------------------------------------GEKVTGANEPVTLNATEDAMALVWGVTEEVLRLADMNSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSEDEWYDAFGSEFES 418
BLAST of mRNA_H-paniculata_contig1553.3231.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE) HSP 1 Score: 165 bits (417), Expect = 4.150e-37 Identity = 131/308 (42.53%), Postives = 159/308 (51.62%), Query Frame = 3
Query: 1332 GPRAKPGLEVSMSLAGLKINLVRRPAPGEKAVIGAYFPGKTTAREGMHVGGQQPWLERCRIMAMDLRAGGVREPSDGWGSPPPEHRAWASILSLTAGAPPVSVSRPGSYRDR------GGGS-----------------NSSTASTKTGGAASGRNSSAERASAKLTFREVDGSKIDDAGARQPPPYLICRPPPDGRAVPTTGAGSVPPTATSARGSAGSTIGGVCGRKASSDRDRNPKSSDQPIAAKFLELKAGGRAGGAAGTGKSASLVVSMGQVETWALGGAATRWWARLGPKPGVLPESTSSST 2186
GPRAKPGLEVS S AG+ +NLVRR A GE +G PG H+G WL+RCR+ A L AGGVREPSDGWGSPPP+HR W S+ SLT G PP ++ G R GG + S A+ GG + ASA +G +G + P+L+CRP A + P A G GS + G G +AS +P FLE+K GRAG AAGTG ASL++ MG+VE WALGGAATRW RLGP+PGVLPES + T
Sbjct: 130 GPRAKPGLEVSFS-AGVTVNLVRRNARGE---VG---PG--------HLG---LWLQRCRVSATGLHAGGVREPSDGWGSPPPQHRGWLSVSSLTVGTPPSPLTPSGVVGSRFAETVAAGGXXXXXXXXXXXXXXXXXXSGSRATNNMGGTG---HQFFRPASAAAPAIAENGK----SGQQHYRPWLVCRP----------AAVAAAPAAPGRSG--GSKVSGG-GSRASHRLGNDPLGGKYD---NFLEVKVAGRAGSAAGTGSCASLLMRMGEVEGWALGGAATRWVERLGPQPGVLPESKKTDT 396
BLAST of mRNA_H-paniculata_contig1553.3231.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 6.220e-16 Identity = 67/163 (41.10%), Postives = 75/163 (46.01%), Query Frame = 3
Query: 3444 VYFKPADACEGHLSTPVQGATASIARQDSI--VGTGPEVLSSTMPWGINPPRGHPILAARLDEVALAMVVREASGRRRDIASTTGSSQGSAEVDKTEKQWRRSRRREYRSTSSTGWVSGAGGQGMTEGAITLAVALIHLEGCDTGCEKPRGVMLPILVASPLR 3926
+Y +P+ L V T +A + VGTG EVL STMPWG++PPRGHPILA RLD LAMVVRE GR MTEGAITL VA I EG D G +K RGVMLPIL SP R
Sbjct: 6 IYRRPSKVRRLLLRVRVSSLTLRLADAARLKKVGTGAEVLGSTMPWGLDPPRGHPILALRLDGAMLAMVVRE--GR------------------------------------------------MTEGAITLTVASIRAEGSDAGVDKARGVMLPILAVSPGR 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1553.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1553.3231.1 >prot_H-paniculata_contig1553.3231.1 ID=prot_H-paniculata_contig1553.3231.1|Name=mRNA_H-paniculata_contig1553.3231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=696bp MLGSFVAKLEGVTIVMRGDVGAMTASSTNPRSQEQDSAGNDHRVYSADSVback to top mRNA from alignment at H-paniculata_contig1553:6798..19739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1553.3231.1 ID=mRNA_H-paniculata_contig1553.3231.1|Name=mRNA_H-paniculata_contig1553.3231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12942bp|location=Sequence derived from alignment at H-paniculata_contig1553:6798..19739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1553:6798..19739+ >mRNA_H-paniculata_contig1553.3231.1 ID=mRNA_H-paniculata_contig1553.3231.1|Name=mRNA_H-paniculata_contig1553.3231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4176bp|location=Sequence derived from alignment at H-paniculata_contig1553:6798..19739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |