mRNA_H-paniculata_contig1553.3230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1553.3230.1
Unique NamemRNA_H-paniculata_contig1553.3230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1553.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1553contigH-paniculata_contig1553:600..5036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size416
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1553.3230.1prot_H-paniculata_contig1553.3230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1553 688..5036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.134524-UTR-H-paniculata_contig1553:599..6871622929243.134524-UTR-H-paniculata_contig1553:599..687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1553 600..687 +
1691480784.324894-UTR-H-paniculata_contig1553:599..6871691480784.324894-UTR-H-paniculata_contig1553:599..687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1553 600..687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.170313-CDS-H-paniculata_contig1553:687..8161622929243.170313-CDS-H-paniculata_contig1553:687..816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 688..816 +
1691480784.3376968-CDS-H-paniculata_contig1553:687..8161691480784.3376968-CDS-H-paniculata_contig1553:687..816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 688..816 +
1622929243.1924334-CDS-H-paniculata_contig1553:4838..50361622929243.1924334-CDS-H-paniculata_contig1553:4838..5036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 4839..5036 +
1691480784.349584-CDS-H-paniculata_contig1553:4838..50361691480784.349584-CDS-H-paniculata_contig1553:4838..5036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1553 4839..5036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1553.3230.1

>prot_H-paniculata_contig1553.3230.1 ID=prot_H-paniculata_contig1553.3230.1|Name=mRNA_H-paniculata_contig1553.3230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MTFLGAMLALLLPTSAWRVIHRRQREHIPEWGRASPLLLQSQEEKSATTP
PPTEDPPPPDPATSVAAEHEEEQKGGETDQIPFSKNKDELSGPNNVPALS
LPSSGRGDG
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mRNA from alignment at H-paniculata_contig1553:600..5036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1553.3230.1 ID=mRNA_H-paniculata_contig1553.3230.1|Name=mRNA_H-paniculata_contig1553.3230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4437bp|location=Sequence derived from alignment at H-paniculata_contig1553:600..5036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATGGGGTACGTAGTAGTTACAGAAAAATCGTCCCTTTCTCTCACAGG
TAGTTCGATCTATCAGCTATCTATTCAGCTCGAGGCCGATGACCTTCTTA
GGGGCGATGTTGGCATTGCTGCTGCCAACGTCAGCTTGGAGGGTAATCCA
TAGGCGACAGCGTGAGCACATCCCGGAGTGGGGGAGGGCGTCACCGCTCT
TGTTGCAAAGTCAGGAGGTAAGTAGTAAAGTATGCAGGTCGGTCCGAAAG
ACATGACCCTTTGACACAAACACTCTATCTGACAGCTATCAGTAGATGTG
TCGGGGTACACGAAATTCACAGTCAAGTGACAGTTACAGTACAGTGGTGC
GGCGGTTACGACTGTTGTGACCCGTTGTACCGATTGCAATACCTGGACAA
GTGCGGAGGCCCGTCCTGCACAAACAACTCTGTAGGGAATTCATGTTTAG
TGACACTGTTACCTGTGGATAAGTCCTAGCCAAAATAGTCAGTCAATAGT
CCGGTCTTCACTTCTACATCTGGGTAAAGTACCTCAATGGTCTTTTATCT
GCCCGGAGGCTGAAGGTGGCACGCGCAAAATGGTCTCTCTCTCTATCTAT
ATATGTGTATATGAGCTGAGTTGTTCTTGCCTATTTCATGACTACTACTC
GGAGCAACGTTAAGTAAGGATGCAGTGAGCAACAAGCCCTGTCGCGGAGC
GCTCTCTATCAAATGGAACGCGGTCTACCGTACTGTAAACCTTCTCTTGA
TGGGAGGTGATCACTGTGATGTTGTCTTGTCCTGGGGGGCAGGTTATGTC
ACCTGTACACAGCTAGCTCCACAGTACGTCGATCTCTCGCCCTGCGCGTC
TTCTGTCCTTTATAGAAGAGTTCACTTAGTTCAGCATGTTTCACGCTTCC
ACAAATCATTACAGTGCGGAGAAACAAATAGACGGTACGACTGGCGACTT
AAAAGCACGGAAACTGCTAGAGATCTATTTAATGAATGCTCACTCGGGTT
TACCTGAGCGCACTCCAGGGGCGCGTATCTGTCAGTTAGTGTCCCTCTTC
CCCCCCTAATTTGGTTGGTTTGCTTGTTTTTTCTGTAATCAGTCCTCATT
CAGTGGTTTAAATTGACTGGGCGTATCTGTTGTCTTGATTGTCATAGGCA
TGTATGTTTCTATTGCACTTGTCACGTTTCAAACCGTATTATTCCCGTGT
TGTTGGCGATGCTGCCCTGTTGTTGGCGATGTTGCCCTGTTGTTGGCGTT
GTCCTCGGCAAGGGTCGTACATACTGTTTCTGCTATGGTCTAGGGTTTTT
GCCCCTGCGTCAAGGTCGCTCCCGTCCTTGTTTCTCTTGCCCCCCCCCCC
TCTCATCAGGTTTTATTATCTGCGTTTTGAATTGTTATTCAATGACCAGC
GTGTAGTTCTACCCCGCGCCTTCCCTAGACCGGTCGGATTACTCAGGTTT
TTAACTTGGATCCCTCATACCCGTCGTATGAGGCCGTTAAAGTGGAAACA
GTAGGGGTGTTGTCGGTAGCACTTTGCCAAAATTAGTGAAATTATTACGG
TGGCGCATGGTTACCCAATACTCGGCGCCATTACACCAAAAATTGGATGC
AGGAGACATTCTATAGCTTGAAAGAACCGCATCAATCAGGTCGTCACATA
GGAAGGAAAAAAAAAATGAAAAACTTATATTCTTGTGTCGACTTATCCCT
CGATGTCCATGATTTTGGTCGTTACCCTTGGGCTGGCTCGGGATAAAAAT
ACCAGCAAAACTTGCCCTGTAGAAACGCCAATTGGGCTTGGAATGGGATA
AACGATAGCTTGAAAGAATTGCCTACATTAGGTCGTCACACAGGAAAAAA
AGCAAAATTGAAAAAAAAAATCTTGTGTCGAGTTATCGCTTAATGTCCCA
TGATTCTGTCCGTTACCCTTGGGCTGACTTGGGGTAAAAATATAAGCGGA
AACTGCACTGTAGAGACATCAGTTGTGATCGGAATGTGACAAACAATAGC
TTGAAAGAATCGCATCAATGAGTCCGTCACACAGGAACAAAAAGAAAAAT
ATATATATATTCTTGTGTCGAGTTATCCCTCAATGTCCATGATTTTGGCC
GTTACCCTTGGGCTGGCTCGGGGTAAAAATATCAGCGCAAATTGCACTGT
AGTCAATGACAAAATGAGGGTAACTGTTGTCCACAGAGTGTTCGTGATTA
TCACCCGTTTTAAGGGGTTTCTAAGTCGGCCACCGAAACAATACTTTCCC
CAATCATAACATAATTATACTCAACCGTAACAACAATTCGGTGAAGCGAA
ATTATTCTGAAATGCAACAAATTAACCCTTTACGTCATGTATTGCGCCGA
GGAGTACTTGTCTCTTGTCTCACACACCTATCCACAGCCAATCGGCCGGT
TCGCCATGGACGTCATCAGCACCACGGTGGCTGTACTGGTTGGGCCGGTG
GGATTTTCGGCGGCCCCCTTGGTGGCTGGTTGGCCAGGCTGGACACGTGT
AAAACCTTGGTTTTGCCAGCCCTTCGCAGAGTGTTGAAATTTCGCCAGTT
TTGCGACAATTTTACACTTGAAATTAGTATAGATAAACTCTGAAATGGGC
CGCACGTTAAGTCATTGTAAGTTCGTGTGACTAGTTTTTATTGAGAGCCA
CGCGGAATTGTGAGTGCCAAAAAACGAATGATGGTAGTCGGAATTTTCTT
TACAACGGAATATTTTATTTAATGCACCGATCAGATCATCAATGAAAGCT
AGAGGGCAAATCCGGTCATCTCATGAACTACGTCACACACGTGTGCAGCT
GCCTGCGTGCATGTTGGCCTCAGCTAGTTCTTCGGAAGCGGAGAGCAAAG
GGCATCGCGACTTCTGAGACACGTATGAATTGATTCGGCATATTTTCTTT
GTCCCAAGAGCCTGTATCGTCATGATTATCTGTTCATGTCGTTGGCAAAC
ATGCGATTAATTGAAAACCAAGCATATACGAATATACCGTTCGAACGCCA
CCAGCTTCAGCTTGCACCTGAATATCCAACAACAACAAAAAAGAAAAATA
ACGCTGGTTGTGCATACCGTGACGAGGAAAAGGCTGTGTAACGGGGTTCT
GAACCAATTGATTGCGACAGTCATAGACGCTTCCAACACGGCGATGAATT
GATTAATTGATGGAGAGGAGGAAGTGAATGAGGAATTTAGTGTAGGAGAC
GCCAAGAAATCCAACGCAGCAGACCGTTGGTTTTTCGGAGGCCTCGTGGA
GATAATGTCACCGATAACCATCATTTCCACGCTACACCCCATATTGTGTA
TTCGATCCACATACTCCGAGCGTGTGGATCAAGGACGCATTTTTCAGGTT
AGTCACCACAACCCCACATTGCTTGCGTTCTGCATTCCTATGATGTGAGC
TCCCTGGCTTGGATAGCCACGACTCGTGTCGGCTCGGACGAGAACAGTAG
TTTGAAGCGTTTGAGTACGTTTTGCTGGGAGCAGACGGGAGATTGAGCTG
AGGTAGGAGGGTGCGCAACCTCCTGTGCCCCAAACCAGCCTAACATAACA
CCCGTAAAACATTCCAAGAGAGTGTTCCTAACTGTTGTTCAACAGTGGCA
GTGCCTGTGAGCGTCTCTTGCACCTGAACCACAGAAATGCAAATGAGAAA
CCGTCAAACACAAGCACCCTCCCTGATTATCTGAACTAGAGACTACCAAA
ATGAATGCCCGGAATCAATCGAACGGTCGCCCAATCTACGAGAAGGTAAC
CTGACCACCAGGCAGAAACCCCCTCTACGAATCGGACACACTGTATCACT
GACAAAGGTCATGCCAGAAGAAAAATTAAGGCAGCAAAACCCAGCACACA
TGTCCGCTAATAACGTAGGTGGCCAATTGGCCTGCTGCCACTGCTTTCCG
AAATCACGAGGACTGTATTGTACAATCTGATAAATCCAGTGAAAAATTTG
CAGTACGCCTTGAAATTTAGACCAAGGGTATCAGTTAGCACATTGACTTG
TTACCCCCATAACTCTCTACATGGTTAAACTAAAGGTTTTGAGCATGTGG
ATACAGGGACAAAACACGGACTGCGCAGGCGTAACCGTTACTTTCCTAAT
AGTGTACCCCCAAGTCCATTTGCTTATATCAGGTGCGCTATCTGTACAAC
TTTGAGATATAGACCCCACAGACGGCTAAGTCGAGGTAGTTTTCGCTCCC
CCCTTTTGCCGCGCCGTGTCTCTACTCATCATGGCGCAGGAAAAATCAGC
GACTACCCCTCCTCCGACGGAGGACCCGCCACCGCCAGACCCTGCGACAT
CGGTTGCGGCGGAACACGAAGAGGAACAAAAGGGAGGCGAAACTGATCAA
ATTCCATTTTCGAAGAATAAGGATGAGCTTAGTGGGCCAAATAACGTCCC
TGCTTTGTCTCTTCCATCGTCTGGTCGTGGTGATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1553:600..5036+

>mRNA_H-paniculata_contig1553.3230.1 ID=mRNA_H-paniculata_contig1553.3230.1|Name=mRNA_H-paniculata_contig1553.3230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig1553:600..5036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTTCTTAGGGGCGATGTTGGCATTGCTGCTGCCAACGTCAGCTTG
GAGGGTAATCCATAGGCGACAGCGTGAGCACATCCCGGAGTGGGGGAGGG
CGTCACCGCTCTTGTTGCAAAGTCAGGAGATGACCTTCTTAGGGGCGATG
TTGGCATTGCTGCTGCCAACGTCAGCTTGGAGGGTAATCCATAGGCGACA
GCGTGAGCACATCCCGGAGTGGGGGAGGGCGTCACCGCTCTTGTTGCAAA
GTCAGGAGGAAAAATCAGCGACTACCCCTCCTCCGACGGAGGACCCGCCA
CCGCCAGACCCTGCGACATCGGTTGCGGCGGAACACGAAGAGGAACAAAA
GGGAGGCGAAACTGATCAAATTCCATTTTCGAAGAATAAGGATGAGCTTA
GTGGGCCAAATAACGTCCCTGCTTTGTCTCTTCCATCGTCTGGTCGTGGT
GATGGCGAAAAATCAGCGACTACCCCTCCTCCGACGGAGGACCCGCCACC
GCCAGACCCTGCGACATCGGTTGCGGCGGAACACGAAGAGGAACAAAAGG
GAGGCGAAACTGATCAAATTCCATTTTCGAAGAATAAGGATGAGCTTAGT
GGGCCAAATAACGTCCCTGCTTTGTCTCTTCCATCGTCTGGTCGTGGTGA
TGGC
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