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Homology
BLAST of mRNA_H-paniculata_contig155.3215.1 vs. uniprot
Match: A0A6H5L022_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L022_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.820e-15 Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 250 YQAGPRQSQHRSPVRSGLRCRPSLANCTLGIRCGGAGQRRTE--TRVWM---KGRSPSQ-LTEDELSQMARAREETNQKLEKFMLLKEALKAAKIEEERELNSAKVKERVRLEKEKADEAKKYIPQRLQEIEREEALLRSRVTDFNAKIKDTDV 693
+ A + + R+P RS A G R G + T TR+ M +GR+P L+E++L+ MA++REE NQK+E F+ + A + A+ E E+ KV R++ EKE+A+ +K YIPQRL+EIERE+A+L+ R++ FN KIKD D+
Sbjct: 29 FPASSQSALARAPTRS--------ATVPAGSRSRGQSRDATTVLTRLGMMFGRGRNPPPTLSEEDLATMAKSREEANQKIENFLEKRRADRKARKEAEQAXXREKVANRMKAEKEEAEHSKVYIPQRLEEIEREQAVLKDRMSAFNTKIKDKDI 174
BLAST of mRNA_H-paniculata_contig155.3215.1 vs. uniprot
Match: D7FRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI6_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.740e-11 Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 436 MARAREETNQKLEKFMLLKEALKAAKIEEERELNSAKVKERVRLEKEKADEAKKYIPQRLQEIEREEALLRSRVTDFNAKIKDTDVKQM 702
MA++REE N K++ F+ + A + A+ E E+ KV R++ +KE+A+ K YIPQRL+EIERE+A+L+ R++ FN KIKD D++ +
Sbjct: 1 MAKSREEANHKIDNFLEKRRAEREARKEAEQAEQREKVANRMKAKKEEAEHNKVYIPQRLEEIEREQAVLKDRMSAFNTKIKDKDIEDL 89
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-09_000100.1 |
| Exons | 4 |
| Model size | 1965 |
| Cds size | 591 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig155.3215.1 >prot_H-paniculata_contig155.3215.1 ID=prot_H-paniculata_contig155.3215.1|Name=mRNA_H-paniculata_contig155.3215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MKFIGVITVSVCIWMCSRCSEAFMLPPTTRSSSISSHRSTVMSGHYQAGP
RQSQHRSPVRSGLRCRPSLANCTLGIRCGGAGQRRTETRVWMKGRSPSQL
TEDELSQMARAREETNQKLEKFMLLKEALKAAKIEEERELNSAKVKERVR
LEKEKADEAKKYIPQRLQEIEREEALLRSRVTDFNAKIKDTDVKQM* back to topmRNA from alignment at H-paniculata_contig155:42654..46996+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig155.3215.1 ID=mRNA_H-paniculata_contig155.3215.1|Name=mRNA_H-paniculata_contig155.3215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4343bp|location=Sequence derived from alignment at H-paniculata_contig155:42654..46996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCCCCAAGTCTGCCACGACTTCTGGTCTGGGTTGTCACCTCCTAAT
AAAGCTCGTACCTCTTGCCTTACCGAGATTTCTTGATAACACAAGCTGCT
GTGGGGAAGATTCGATGAAGTTCATTGGCGTTATTACTGTCTCGGTTTGC
ATATGGATGTGCAGCAGGTGCAGTGAGGTGAGGAAGCTAGTAGTTACTCT
CTCCCTGTCTGTCCTATCTATCCCTCGAATTACAGCCATCTTGAGTTACC
GTACAGTGCAGTTGACGGTACAGTAGAGGGTCAACCTCCTGTACTACTGA
CTTGACCAGAGTTGAAGAATTCGCTGTGTAAAGTGGCCGCTGGATTCAAG
TTGTATGATGTTGACCGCGCGTTGGTGCCAGTGCTGTCGTACACACTCAA
CACGTCAACCTGGACAGGCGGGTACATACTGCAACATGAGTTACGCTCAT
CCTGTATTTGGGTCAAATTGACACTGCAGACAGATTTTCATTAGTCACTG
CTGGCACAAGGCCTTCCCCACTTTTCCATGCGTTGCCAGCATGGGCTGAC
TACTCTCTCTCACCGTCCCTCCGTTTTCGTAGTCCACATTCGTCGCTTTC
CTGGTACCAGTTTTGGTACGAATTGTAGGATTGGCATGTATCCGTGCAGA
TCAACAAACTAGGATCACCAGGGTATCACCGCAAACCACGGTAGTGCTAG
CGACCGCGATCGATCCCATAATCGTCACATCATTCAATCACTGCAAGCAG
CTGATTTCTATCTTGCCGCTGCTCTCTTGGAGAGTCAGACCCATACGCTT
GGCTACTCTTGTACATGACAATATCGAATGCAAACCTTGGAGACATCCCT
CAGTTTTGCTATTTATTGCCTTACCTTACAAACTTGACGTATAATCACCA
TCCTTATTGATCTGTCTACCATGCTTGTAATTTCCCTAAAAAATGTACAC
CGCTGAAATTTGAGGTCACCTGCTTGCCCTCAACATGGGTACGGTGATGG
AGTTATTTTATGAGCGTTATAATTCTCCCCCTCCCCTTCCCCCTCCCTCT
AGGCGTTCATGCTGCCCCCGACAACACGCTCAAGCAGCATCTCCTCGCAC
CGAAGTACAGTAATGTCAGGGCATTATCAAGCCGGCCCGCGGCAATCACA
ACACAGATCACCGGTCAGATCAGGATTACGTTGTCGGCCAAGCTTAGCTA
ATTGCACATTGGGGATAAGGTGCGGCGGGGCCGGGCAACGGCGGACAGAG
ACACGGGTTTGGATGAAAGGACGTTCTCCGTCGCAACTTACCGAGGATGA
GCTGTCGCAGATGGCCAGAGCAAGGGAAGAGGTGCGGTCTAGGTGGGCGT
TGTCTAATAAGTTTGGTGTCACTCACCATTCGACGGGGCTCTTGTTATAC
AAGTAATCGATTCGCTCGAACATTACAGTATGGGTGACGCGTCATTTTTT
CTGCTCTGATAGTTCTGGCACTACTCCATGACGCTCGGGCTGTAGTCGAA
TCAACTTCGTACCGCAATAGAGCTCTAAAGAAAGGCTGACGATGGAGTCG
TAACAGTAGAGCGTGACACGAAAGTTTCGAACCCTCTCCCATGTCGCTCG
TCGCGCGTGCAACTTTTACTTCGCCTCTCGCATGTAACATGTAACATGTA
TCTTGCACAGACCAACCAAAAGTTGGAAAAGTTCATGCTCTTGAAAGAGG
CATTAAAGGCGGCCAAGATTGAAGAGGAGCGGGAGCTGAATAGCGCCAAA
GTGAAGGAGAGAGTTAGGCTCGAAAAGGAGAAGGTAAGAGAGAGAGAGAG
AGAGAGAGAGAGGTCTGTAGAGGACAGAATACCCTTTTCACACTGGCGTC
GTCAGTAGGATCCCTTACCACGGGATCTGAAGGTCGTGAGTTCGAATCCG
ACCAAGATCACCGAAAATGAATTTTGCAACTTAAACAGGCCCCAAAGATA
GCGGGGGAAACGGACACAACTTCCATACATAAATCTAGTAAGACAATCGC
AAGAGGAGGAAAGATTGTGAGCAAAACAGGAGTAAACCTCCGTACCGCCA
GCCGGCGAAACGGGTTACCCCTAGTAGGCACTTGAACAATAGGAAAGAGC
CTGATTAAGATTGGAGGTGATGTAGAGAGTACCCTATCAAAGGGAATAAT
TCTCACTAATTTCTGTAGAGGACAGAATGCCCTTTTCACACCCTGTCTAC
GTGGTTCTGGCCAGCAAGATAGCACACGTGTTTCTTGTGCATCCGCCATC
CTTGCCTACTCAGTGGGCAAAGCCTGAAAAACTTGCACGCATCCCGTCAC
GAGAACCAGCCGAAGATCTAAGAGGTTGTGCTCTGATATACCGCTTCATT
GTCGAGTTTCTCTCAAGGTGCACGTGCTTTCGGCGGCAATGCCCCTGCTT
CCCATCTAAATCCTGTGTATTGCGAGGCCATGGCAAGGATCACTTGTCCG
CGGCACGTGAAAATCACATGGACATTTGCTTGACAAGCGAAGCAGCCCTC
AATACACCAGTACGATGTACATCTCCACCCCAGTTTTTTGCCTCCGAAAC
CAGTACTACTAACTATGCTCACGTTACAACTTGTTTGGTGTTTGTAGTTC
AGCTGTGCAAGATTCGAGCAAATTGGCTTAACTTGGCCGTATTCCATACT
AACTTCATGTTGTTTTGATCAACGTGGGTCCCTTCCCCCGAGGTCGCGAG
TCCCACCCAAACCATCGAACAAAGTTGTATCACCATTAAGTGTTTTCAGC
AGCAACTCACGAAAACTAAGCCGTGTTACTGCGTTCGTTGTTGCTGCCTC
TCGTGACTTGGGCCCCACGCGCGTCGTAACCAACGACCCGCGTTTGACGT
TGATTTCCAATTTTTAGTGTTTACTTCTCGGAGACATCATTTTTCCAAGA
TACTATTTTTGAAATAATTCGTATCCTGTGCTTGTGGTTTTGGTGCATAT
TTTCCAGGCGGACGAGGCTAAGAAGTATATTCCGCAACGATTGCAAGAGA
TCGAGCGGGAAGAGGCCCTGTTGCGGAGTCGAGTCACCGACTTCAACGCG
AAAATAAAGGACACCGACGTGAAGCAGATGTAGTCAAATATCAGTCCATA
AATCATAAACACATACCTACAACCTCCCTGGTCTGGAACCGGCCATTTCA
AACCTTCAACACGAGCACGGGGTCTCGTTTGGCACTTCTGACTACGCACT
CGTTTTGTTCCCTGCCTCGTATTCTACGGAGCTTGAGTGGCGCAGGGTTC
CATTCACTGTATTGGCCGTTGAAGTCTACTCCGCGCACACCCTCTTCCAA
GTTTTGCCGTTGCCATTGCTGTCGTACTATTAATGGTATGAGCCAGAATT
TGCTGCGCGCAGATGAGTGCGCAATGGACGTCAACAACGTCTGCACCACG
GTTTGTTCATCCAATGGCGGAACCCACCCACTGCCATCGTGTGCGACTCG
AGCGGATAGGATGGCTGCGTTCTATTGAAGATGTCAAGTGCTGCCTTGAT
TTCGCTGAGAGGTTGCAGAGATTCCAACGACTGGGCAATTACCTCCCTTC
TGGGCAAAAAAATGCTTTCTAAGAGCTGGCAGAAATAGTGGAGACATTGC
TGGAGGGGAGCCGGGTAGTTAAAATTAATATCATCATCTTTATCGAGGGC
GGAAGTAAACGTTTACATGTTGATACTTTATATGTTGATCAATAATAAAC
TTGTGTACATTCAATCAGACGTTTTGGAATTATAGGTTTTGATGTGGAGA
GCAGGTGCAAATGTGTTATTTCCTTGAGGAACACCGTTTTCTTAGGAAGT
GAACCATGATGAAACCTAACTAGACCATGATTCTGTGGTAATTTGTGATT
TATGATTCCAATTAGCGCGATCCCCCACGACTTCCTGTGAGAACGTTCAG
CTGCCTAGCTGTGCTGGTAAACATCGGGTATATATCACCTTCCCTCGCAC
TTTTTGCGCAGGAAGGACTGTAAACAATCTGATGAAAAATGATAACGTTT
GGATATGTAATCAAGCCAGTGTGTAATAGACGTAACTTAGAGTCATGCTT
CATGATGTGAAGCGAAGTTTTCATATCTTCTCAGAGAGGTTACCGCAATC
ATCGTTTCTTACGTCGAGATGGTGTTGCGATGATATGCACTCGTGATATA
ACGAAAACACTGCTTCCGTTGGTAACGTGTTTCATCACTGGGTGGGAATT
ATTCCATTAGTGATTCTCTGAATTGTTGGGGCAACAACATACCCCCCGGC
CCCCAGAAGTAGAGTTTGTCATATCCGTTCTGTTGTAAACAAGGGTGCTG
ATGGAACAGAGAGTGAGGTCATTTTGGGATATTGTCATTGGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig155:42654..46996+ >mRNA_H-paniculata_contig155.3215.1 ID=mRNA_H-paniculata_contig155.3215.1|Name=mRNA_H-paniculata_contig155.3215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig155:42654..46996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTCATTGGCGTTATTACTGTCTCGGTTTGCATATGGATGTGCAG
CAGGTGCAGTGAGATGAAGTTCATTGGCGTTATTACTGTCTCGGTTTGCA
TATGGATGTGCAGCAGGTGCAGTGAGGCGTTCATGCTGCCCCCGACAACA
CGCTCAAGCAGCATCTCCTCGCACCGAAGTACAGTAATGTCAGGGCATTA
TCAAGCCGGCCCGCGGCAATCACAACACAGATCACCGGTCAGATCAGGAT
TACGTTGTCGGCCAAGCTTAGCTAATTGCACATTGGGGATAAGGTGCGGC
GGGGCCGGGCAACGGCGGACAGAGACACGGGTTTGGATGAAAGGACGTTC
TCCGTCGCAACTTACCGAGGATGAGCTGTCGCAGATGGCCAGAGCAAGGG
AAGAGGCGTTCATGCTGCCCCCGACAACACGCTCAAGCAGCATCTCCTCG
CACCGAAGTACAGTAATGTCAGGGCATTATCAAGCCGGCCCGCGGCAATC
ACAACACAGATCACCGGTCAGATCAGGATTACGTTGTCGGCCAAGCTTAG
CTAATTGCACATTGGGGATAAGGTGCGGCGGGGCCGGGCAACGGCGGACA
GAGACACGGGTTTGGATGAAAGGACGTTCTCCGTCGCAACTTACCGAGGA
TGAGCTGTCGCAGATGGCCAGAGCAAGGGAAGAGACCAACCAAAAGTTGG
AAAAGTTCATGCTCTTGAAAGAGGCATTAAAGGCGGCCAAGATTGAAGAG
GAGCGGGAGCTGAATAGCGCCAAAGTGAAGGAGAGAGTTAGGCTCGAAAA
GGAGAAGACCAACCAAAAGTTGGAAAAGTTCATGCTCTTGAAAGAGGCAT
TAAAGGCGGCCAAGATTGAAGAGGAGCGGGAGCTGAATAGCGCCAAAGTG
AAGGAGAGAGTTAGGCTCGAAAAGGAGAAGGCGGACGAGGCTAAGAAGTA
TATTCCGCAACGATTGCAAGAGATCGAGCGGGAAGAGGCCCTGTTGCGGA
GTCGAGTCACCGACTTCAACGCGAAAATAAAGGACACCGACGTGAAGCAG
ATGTAGGCGGACGAGGCTAAGAAGTATATTCCGCAACGATTGCAAGAGAT
CGAGCGGGAAGAGGCCCTGTTGCGGAGTCGAGTCACCGACTTCAACGCGA
AAATAAAGGACACCGACGTGAAGCAGATGTAG back to top
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